RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 NSD3Q9BZ95 1437 aa14.88□□□□□ -0.03
MSH3-201ENST00000265081 CDC42BPGQ6DT37 1551 aa14.88□□□□□ -0.03
MSH3-201ENST00000265081 NCBP3Q53F19 620 aaKnown RBP14.88□□□□□ -0.03
MSH3-201ENST00000265081 COL3A1P02461 1466 aaPredicted RBP14.88□□□□□ -0.03
MSH3-201ENST00000265081 B4GALNT3Q6L9W6 998 aa14.87□□□□□ -0.03
MSH3-201ENST00000265081 IDI1Q13907 227 aa14.86□□□□□ -0.03
MSH3-201ENST00000265081 MYT1Q01538 1121 aa14.86□□□□□ -0.03
MSH3-201ENST00000265081 DUSP27Q5VZP5 1158 aa14.85□□□□□ -0.03
MSH3-201ENST00000265081 CDCA7LQ96GN5 454 aa14.85□□□□□ -0.03
MSH3-201ENST00000265081 YTHDC2Q9H6S0 1430 aaKnown RBP14.85□□□□□ -0.03
MSH3-201ENST00000265081 ABCC11Q96J66 1382 aa14.84□□□□□ -0.03
MSH3-201ENST00000265081 UBR1Q8IWV7 1749 aa14.84□□□□□ -0.03
MSH3-201ENST00000265081 CNGB1Q14028 1251 aaPredicted RBP14.84□□□□□ -0.03
MSH3-201ENST00000265081 CPS1P31327 1500 aa14.83□□□□□ -0.04
MSH3-201ENST00000265081 PHF23Q9BUL5 403 aaPredicted RBP14.83□□□□□ -0.04
MSH3-201ENST00000265081 MON2Q7Z3U7 1717 aa14.82□□□□□ -0.04
MSH3-201ENST00000265081 AKAP12Q02952 1782 aa14.82□□□□□ -0.04
MSH3-201ENST00000265081 NKTRP30414 1462 aaKnown RBP14.82□□□□□ -0.04
MSH3-201ENST00000265081 SLFN5Q08AF3 891 aa14.81□□□□□ -0.04
MSH3-201ENST00000265081 EVC2Q86UK5 1308 aa14.8□□□□□ -0.04
MSH3-201ENST00000265081 TOPAZ1Q8N9V7 1692 aa14.8□□□□□ -0.04
MSH3-201ENST00000265081 TECPR2O15040 1411 aa14.8□□□□□ -0.04
MSH3-201ENST00000265081 TRAK1Q9UPV9 953 aa14.79□□□□□ -0.04
MSH3-201ENST00000265081 WDR43Q15061 677 aaKnown RBP eCLIP14.79□□□□□ -0.04
MSH3-201ENST00000265081 ATP7BP35670 1465 aa14.79□□□□□ -0.04
MSH3-201ENST00000265081 VIRMAQ69YN4 1812 aaKnown RBP14.78□□□□□ -0.04
MSH3-201ENST00000265081 TMEM132EQ6IEE7 984 aa14.78□□□□□ -0.04
MSH3-201ENST00000265081 NRKQ7Z2Y5 1582 aa14.77□□□□□ -0.04
MSH3-201ENST00000265081 ATAD2Q6PL18 1390 aa14.77□□□□□ -0.04
MSH3-201ENST00000265081 A0A1W2PP64 1363 aa14.77□□□□□ -0.05
MSH3-201ENST00000265081 MSH5O43196 834 aa14.77□□□□□ -0.05
MSH3-201ENST00000265081 FAM69CQ0P6D2 419 aa14.77□□□□□ -0.05
MSH3-201ENST00000265081 EXOC6Q8TAG9 804 aa14.77□□□□□ -0.05
MSH3-201ENST00000265081 CGNL1Q0VF96 1302 aa14.76□□□□□ -0.05
MSH3-201ENST00000265081 C3P01024 1663 aa14.76□□□□□ -0.05
MSH3-201ENST00000265081 GOLGA2Q08379 1002 aa14.76□□□□□ -0.05
MSH3-201ENST00000265081 CYB5RLQ6IPT4 315 aa14.76□□□□□ -0.05
MSH3-201ENST00000265081 CCDC136Q96JN2 1154 aa14.75□□□□□ -0.05
MSH3-201ENST00000265081 SLC12A5Q9H2X9 1139 aa14.75□□□□□ -0.05
MSH3-201ENST00000265081 KDM2BQ8NHM5 1336 aa14.75□□□□□ -0.05
MSH3-201ENST00000265081 RIMS1Q86UR5 1692 aaKnown RBP14.75□□□□□ -0.05
MSH3-201ENST00000265081 CCDC27Q2M243 656 aa14.75□□□□□ -0.05
MSH3-201ENST00000265081 ANP32EQ9BTT0 268 aa14.75□□□□□ -0.05
MSH3-201ENST00000265081 RIMS2Q9UQ26 1411 aa14.74□□□□□ -0.05
MSH3-201ENST00000265081 PNPLA6Q8IY17 1366 aa14.74□□□□□ -0.05
MSH3-201ENST00000265081 CHGAP10645 457 aaKnown RBP14.73□□□□□ -0.05
MSH3-201ENST00000265081 FAM135BQ49AJ0 1406 aa14.73□□□□□ -0.05
MSH3-201ENST00000265081 ITSN1Q15811 1721 aa14.72□□□□□ -0.05
MSH3-201ENST00000265081 NALCNQ8IZF0 1738 aa14.72□□□□□ -0.05
MSH3-201ENST00000265081 SENP3-EIF4A1A0A087X0R7 540 aa14.71□□□□□ -0.05
MSH3-201ENST00000265081 E9PSI1 815 aa14.71□□□□□ -0.05
MSH3-201ENST00000265081 SPINK5Q9NQ38 1064 aaPredicted RBP14.71□□□□□ -0.05
MSH3-201ENST00000265081 CPSF1Q10570 1443 aaKnown RBP14.71□□□□□ -0.05
MSH3-201ENST00000265081 FBXO31Q5XUX0 539 aaPredicted RBP14.71□□□□□ -0.06
MSH3-201ENST00000265081 SIRT1Q96EB6 747 aa14.7□□□□□ -0.06
MSH3-201ENST00000265081 MS4A1P11836 297 aa14.69□□□□□ -0.06
MSH3-201ENST00000265081 MORC1Q86VD1 984 aa14.68□□□□□ -0.06
MSH3-201ENST00000265081 APAF1O14727 1248 aa14.68□□□□□ -0.06
MSH3-201ENST00000265081 TCERG1O14776 1098 aaKnown RBP14.68□□□□□ -0.06
MSH3-201ENST00000265081 WWC1Q8IX03 1113 aa14.68□□□□□ -0.06
MSH3-201ENST00000265081 RUNDC1Q96C34 613 aa14.68□□□□□ -0.06
MSH3-201ENST00000265081 CRBNQ96SW2 442 aa14.67□□□□□ -0.06
MSH3-201ENST00000265081 USP54Q70EL1 1684 aa14.67□□□□□ -0.06
MSH3-201ENST00000265081 SALL2Q9Y467 1007 aaPredicted RBP14.67□□□□□ -0.06
MSH3-201ENST00000265081 DMRT2Q9Y5R5 561 aa14.67□□□□□ -0.06
MSH3-201ENST00000265081 SLIT1O75093 1534 aa14.67□□□□□ -0.06
MSH3-201ENST00000265081 WDR63Q8IWG1 891 aa14.66□□□□□ -0.06
MSH3-201ENST00000265081 MAP2P11137 1827 aaKnown RBP14.66□□□□□ -0.06
MSH3-201ENST00000265081 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.66□□□□□ -0.06
MSH3-201ENST00000265081 ZMYM3Q14202 1370 aa14.66□□□□□ -0.06
MSH3-201ENST00000265081 C20orf194Q5TEA3 1177 aa14.66□□□□□ -0.06
MSH3-201ENST00000265081 PLEKHF1Q96S99 279 aa14.66□□□□□ -0.06
MSH3-201ENST00000265081 CCDC146Q8IYE0 955 aa14.65□□□□□ -0.06
MSH3-201ENST00000265081 CABP2Q9NPB3 220 aa14.65□□□□□ -0.06
MSH3-201ENST00000265081 DIP2AQ14689 1571 aa14.65□□□□□ -0.06
MSH3-201ENST00000265081 ARHGAP23Q9P227 1491 aa14.65□□□□□ -0.06
MSH3-201ENST00000265081 PLIN1O60240 522 aa14.64□□□□□ -0.07
MSH3-201ENST00000265081 PRAM1Q96QH2 718 aa14.64□□□□□ -0.07
MSH3-201ENST00000265081 LRRC7Q96NW7 1537 aa14.64□□□□□ -0.07
MSH3-201ENST00000265081 NUTM2DQ5VT03 806 aaPredicted RBP14.63□□□□□ -0.07
MSH3-201ENST00000265081 RGPD1P0DJD0 1748 aa14.63□□□□□ -0.07
MSH3-201ENST00000265081 MTHFSP49914 203 aa14.63□□□□□ -0.07
MSH3-201ENST00000265081 ADAMTS13Q76LX8 1427 aa14.63□□□□□ -0.07
MSH3-201ENST00000265081 EDC4Q6P2E9 1401 aaKnown RBP14.62□□□□□ -0.07
MSH3-201ENST00000265081 CDK12Q9NYV4 1490 aaPredicted RBP14.62□□□□□ -0.07
MSH3-201ENST00000265081 FYB1O15117 783 aa14.62□□□□□ -0.07
MSH3-201ENST00000265081 XRN1Q8IZH2 1706 aaKnown RBP14.62□□□□□ -0.07
MSH3-201ENST00000265081 FER1L4A9Z1Z3 1794 aa14.62□□□□□ -0.07
MSH3-201ENST00000265081 METP08581 1390 aa14.61□□□□□ -0.07
MSH3-201ENST00000265081 PDE3AQ14432 1141 aa14.61□□□□□ -0.07
MSH3-201ENST00000265081 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.61□□□□□ -0.07
MSH3-201ENST00000265081 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.61□□□□□ -0.07
MSH3-201ENST00000265081 AATKQ6ZMQ8 1374 aa14.61□□□□□ -0.07
MSH3-201ENST00000265081 PPIP5K1Q6PFW1 1433 aa14.6□□□□□ -0.07
MSH3-201ENST00000265081 TNRQ92752 1358 aa14.6□□□□□ -0.07
MSH3-201ENST00000265081 CENPQQ7L2Z9 268 aaPredicted RBP14.6□□□□□ -0.07
MSH3-201ENST00000265081 TERF2IPQ9NYB0 399 aa14.6□□□□□ -0.07
MSH3-201ENST00000265081 TMEM2Q9UHN6 1383 aa14.6□□□□□ -0.07
MSH3-201ENST00000265081 CFAP53Q96M91 514 aa14.59□□□□□ -0.07
MSH3-201ENST00000265081 CDK19Q9BWU1 502 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 100.2 ms