RNA–Protein interactions for RNA: ENST00000263071.8

SCARF1-201, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SCARF1, Length 3,443 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-201ENST00000263071 ADGRF5Q8IZF2 1346 aa17.75■□□□□ 0.43
SCARF1-201ENST00000263071 PDZRN3Q9UPQ7 1066 aa17.75■□□□□ 0.43
SCARF1-201ENST00000263071 PCDHB15Q9Y5E8 787 aa17.75■□□□□ 0.43
SCARF1-201ENST00000263071 MAPK8IP2Q13387 824 aaPredicted RBP17.75■□□□□ 0.43
SCARF1-201ENST00000263071 NCBP3Q53F19 620 aaKnown RBP17.74■□□□□ 0.43
SCARF1-201ENST00000263071 MAGI2Q86UL8 1455 aa17.73■□□□□ 0.43
SCARF1-201ENST00000263071 SMC4Q9NTJ3 1288 aa17.73■□□□□ 0.43
SCARF1-201ENST00000263071 CCDC141Q6ZP82 1450 aa17.72■□□□□ 0.43
SCARF1-201ENST00000263071 ZBTB7CA1YPR0 619 aa17.72■□□□□ 0.43
SCARF1-201ENST00000263071 PLA2R1Q13018 1463 aa17.71■□□□□ 0.43
SCARF1-201ENST00000263071 UQCRHLA0A096LP55 91 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 OFD1O75665 1012 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 UQCRHP07919 91 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 ADGRL2O95490 1459 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 SYCP2Q9BX26 1530 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 COL17A1Q9UMD9 1497 aaPredicted RBP17.7■□□□□ 0.42
SCARF1-201ENST00000263071 KIF20AO95235 890 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 FBLN1P23142 703 aa17.7■□□□□ 0.42
SCARF1-201ENST00000263071 CABP2Q9NPB3 220 aa17.69■□□□□ 0.42
SCARF1-201ENST00000263071 APBB1O00213 710 aa17.69■□□□□ 0.42
SCARF1-201ENST00000263071 SRPK2P78362 688 aaKnown RBP17.69■□□□□ 0.42
SCARF1-201ENST00000263071 GGNBP2Q9H3C7 697 aa17.69■□□□□ 0.42
SCARF1-201ENST00000263071 CGNL1Q0VF96 1302 aa17.69■□□□□ 0.42
SCARF1-201ENST00000263071 TRAK2O60296 914 aa17.68■□□□□ 0.42
SCARF1-201ENST00000263071 TPRNQ4KMQ1 711 aa17.68■□□□□ 0.42
SCARF1-201ENST00000263071 CFAP53Q96M91 514 aa17.67■□□□□ 0.42
SCARF1-201ENST00000263071 BLMP54132 1417 aaPredicted RBP17.67■□□□□ 0.42
SCARF1-201ENST00000263071 RARSP54136 660 aaKnown RBP17.66■□□□□ 0.42
SCARF1-201ENST00000263071 CHMP4AQ9BY43 222 aa17.66■□□□□ 0.42
SCARF1-201ENST00000263071 LNPKQ9C0E8 428 aa17.66■□□□□ 0.42
SCARF1-201ENST00000263071 C1orf115Q9H7X2 142 aa17.66■□□□□ 0.42
SCARF1-201ENST00000263071 ZSCAN20P17040 1043 aaPredicted RBP17.65■□□□□ 0.42
SCARF1-201ENST00000263071 TERF1P54274 439 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 SECISBP2LQ93073 1101 aaKnown RBP17.65■□□□□ 0.42
SCARF1-201ENST00000263071 ARHGEF12Q9NZN5 1544 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 ZSCAN30Q86W11 494 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 TBC1D2Q9BYX2 928 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 RWDD1Q9H446 243 aaPredicted RBP17.65■□□□□ 0.42
SCARF1-201ENST00000263071 ABCC10Q5T3U5 1492 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 MCM4P33991 863 aa17.65■□□□□ 0.42
SCARF1-201ENST00000263071 LETM1O95202 739 aaPredicted RBP17.64■□□□□ 0.41
SCARF1-201ENST00000263071 EXOSC9Q06265 439 aaKnown RBP17.64■□□□□ 0.41
SCARF1-201ENST00000263071 GTPBP4Q9BZE4 634 aaKnown RBP17.64■□□□□ 0.41
SCARF1-201ENST00000263071 CGNQ9P2M7 1197 aaKnown RBP17.64■□□□□ 0.41
SCARF1-201ENST00000263071 CCDC94Q9BW85 323 aaPredicted RBP17.63■□□□□ 0.41
SCARF1-201ENST00000263071 ITSN2Q9NZM3 1697 aa17.63■□□□□ 0.41
SCARF1-201ENST00000263071 NKTRP30414 1462 aaKnown RBP17.63■□□□□ 0.41
SCARF1-201ENST00000263071 CDC42BPAQ5VT25 1732 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 TEX2Q8IWB9 1127 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 PMFBP1Q8TBY8 1022 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 RUNDC1Q96C34 613 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 MAPK8IP3Q9UPT6 1336 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.62■□□□□ 0.41
SCARF1-201ENST00000263071 ZNF521Q96K83 1311 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 NUP160Q12769 1436 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 ZMYM4Q5VZL5 1548 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 CBX1P83916 185 aa17.62■□□□□ 0.41
SCARF1-201ENST00000263071 KDM5DQ9BY66 1539 aa17.61■□□□□ 0.41
SCARF1-201ENST00000263071 IRX3P78415 501 aaPredicted RBP17.61■□□□□ 0.41
SCARF1-201ENST00000263071 TAF3Q5VWG9 929 aa17.61■□□□□ 0.41
SCARF1-201ENST00000263071 SOX12O15370 315 aa17.6■□□□□ 0.41
SCARF1-201ENST00000263071 DYNC1I1O14576 645 aa17.6■□□□□ 0.41
SCARF1-201ENST00000263071 DZIP1LQ8IYY4 767 aaKnown RBP17.6■□□□□ 0.41
SCARF1-201ENST00000263071 THUMPD2Q9BTF0 503 aaKnown RBP17.6■□□□□ 0.41
SCARF1-201ENST00000263071 PDE3AQ14432 1141 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 C22orf23Q9BZE7 217 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 ISY1Q9ULR0 285 aaKnown RBP17.59■□□□□ 0.41
SCARF1-201ENST00000263071 MINK1Q8N4C8 1332 aaPredicted RBP17.59■□□□□ 0.41
SCARF1-201ENST00000263071 ADGBQ8N7X0 1667 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 EIF3AQ14152 1382 aaKnown RBP17.59■□□□□ 0.41
SCARF1-201ENST00000263071 TRAPPC8Q9Y2L5 1435 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 ZBTB22O15209 634 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 USP19O94966 1318 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 NSD3Q9BZ95 1437 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 ZKSCAN2Q63HK3 967 aa17.59■□□□□ 0.41
SCARF1-201ENST00000263071 SCAPERQ9BY12 1400 aa17.58■□□□□ 0.41
SCARF1-201ENST00000263071 HSP90AB1P08238 724 aaKnown RBP17.58■□□□□ 0.41
SCARF1-201ENST00000263071 HSCBQ8IWL3 235 aa17.57■□□□□ 0.4
SCARF1-201ENST00000263071 KANK1Q14678 1352 aa17.57■□□□□ 0.4
SCARF1-201ENST00000263071 WDR7Q9Y4E6 1490 aa17.57■□□□□ 0.4
SCARF1-201ENST00000263071 HMOX1P09601 288 aa17.57■□□□□ 0.4
SCARF1-201ENST00000263071 GPRASP1Q5JY77 1395 aa17.57■□□□□ 0.4
SCARF1-201ENST00000263071 NOB1Q9ULX3 412 aaKnown RBP17.56■□□□□ 0.4
SCARF1-201ENST00000263071 POLR1AO95602 1720 aaPredicted RBP17.56■□□□□ 0.4
SCARF1-201ENST00000263071 ABCA8O94911 1581 aa17.55■□□□□ 0.4
SCARF1-201ENST00000263071 ANKRD45Q5TZF3 282 aa17.55■□□□□ 0.4
SCARF1-201ENST00000263071 PLPPR3Q6T4P5 718 aa17.55■□□□□ 0.4
SCARF1-201ENST00000263071 CCDC173Q0VFZ6 552 aa17.54■□□□□ 0.4
SCARF1-201ENST00000263071 FOXD4L5Q5VV16 416 aaPredicted RBP17.54■□□□□ 0.4
SCARF1-201ENST00000263071 FOXD4L4Q8WXT5 416 aaPredicted RBP17.54■□□□□ 0.4
SCARF1-201ENST00000263071 STAG3Q9UJ98 1225 aa17.54■□□□□ 0.4
SCARF1-201ENST00000263071 SSH1Q8WYL5 1049 aa17.54■□□□□ 0.4
SCARF1-201ENST00000263071 AEBP1Q8IUX7 1158 aa17.54■□□□□ 0.4
SCARF1-201ENST00000263071 SAMD9LQ8IVG5 1584 aa17.54■□□□□ 0.4
SCARF1-201ENST00000263071 CROCC2H7BZ55 1655 aa17.53■□□□□ 0.4
SCARF1-201ENST00000263071 ERCC6L2Q5T890 1561 aa17.53■□□□□ 0.4
SCARF1-201ENST00000263071 XPCQ01831 940 aaPredicted RBP17.52■□□□□ 0.4
SCARF1-201ENST00000263071 ZNF771Q7L3S4 317 aaPredicted RBP17.52■□□□□ 0.4
SCARF1-201ENST00000263071 TMEM57Q8N5G2 664 aa17.52■□□□□ 0.4
SCARF1-201ENST00000263071 MVPQ14764 893 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms