RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W ATP17Q06405 101 aa0.26□□□□□ -2.37
UPF3YGR072W MLP1Q02455 1875 aaKnown RBP0.25□□□□□ -2.37
UPF3YGR072W YGR121W-AQ3E816 71 aa0.25□□□□□ -2.37
UPF3YGR072W PMD1P32634 1753 aa0.24□□□□□ -2.37
UPF3YGR072W SIN3P22579 1536 aa0.23□□□□□ -2.37
UPF3YGR072W LSM2P38203 95 aaKnown RBP0.22□□□□□ -2.37
UPF3YGR072W APC1P53886 1748 aa0.21□□□□□ -2.38
UPF3YGR072W SEN1Q00416 2231 aaKnown RBP0.21□□□□□ -2.38
UPF3YGR072W TY2B-CP25384 1770 aa0.2□□□□□ -2.38
UPF3YGR072W TY2B-DR1Q12472 1770 aa0.2□□□□□ -2.38
UPF3YGR072W YLR146W-AQ2V2P1 62 aa0.2□□□□□ -2.38
UPF3YGR072W YGR035W-AQ45U48 73 aa0.2□□□□□ -2.38
UPF3YGR072W YDR119W-AQ2V2P9 66 aa0.19□□□□□ -2.38
UPF3YGR072W SMC4Q12267 1418 aa0.19□□□□□ -2.38
UPF3YGR072W OLI1P61829 76 aa0.18□□□□□ -2.38
UPF3YGR072W PAU7P39545 55 aa0.17□□□□□ -2.38
UPF3YGR072W YHR213W-AQ8TGT4 77 aa0.15□□□□□ -2.39
UPF3YGR072W TIM12P32830 109 aa0.14□□□□□ -2.39
UPF3YGR072W YBR200W-AQ3E755 54 aa0.14□□□□□ -2.39
UPF3YGR072W YKL018C-AQ3E7A7 99 aa0.14□□□□□ -2.39
UPF3YGR072W YOR011W-AQ3E807 68 aa0.14□□□□□ -2.39
UPF3YGR072W RPS27AP35997 82 aaKnown RBP0.13□□□□□ -2.39
UPF3YGR072W RPS29AP41057 56 aaKnown RBP0.12□□□□□ -2.39
UPF3YGR072W YOR008C-AQ3E7B9 74 aa0.12□□□□□ -2.39
UPF3YGR072W YOR032W-AQ8TGS1 66 aa0.12□□□□□ -2.39
UPF3YGR072W YOR394C-AQ8TGJ0 55 aa0.11□□□□□ -2.39
UPF3YGR072W YMR001C-AQ8TGS9 76 aa0.11□□□□□ -2.39
UPF3YGR072W TY2B-LR1P0C2J3 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-FP0CX63 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-GR2P0CX64 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-DR2Q03494 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-OR1Q12113 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-BQ12491 1770 aa0.1□□□□□ -2.39
UPF3YGR072W TY2B-OR2Q12501 1770 aa0.1□□□□□ -2.39
UPF3YGR072W YDR182W-AQ3E796 67 aa0.1□□□□□ -2.39
UPF3YGR072W YBL039W-BP0C268 59 aa0.09□□□□□ -2.4
UPF3YGR072W HUB1Q6Q546 73 aa0.09□□□□□ -2.4
UPF3YGR072W IRC20Q06554 1556 aa0.08□□□□□ -2.4
UPF3YGR072W SSS1P35179 80 aa0.08□□□□□ -2.4
UPF3YGR072W SPI1P40092 148 aa0.08□□□□□ -2.4
UPF3YGR072W SIP18P50263 79 aa0.08□□□□□ -2.4
UPF3YGR072W KOG1P38873 1557 aa0.07□□□□□ -2.4
UPF3YGR072W TY2B-DR3Q07791 1770 aaKnown RBP0.06□□□□□ -2.4
UPF3YGR072W UFD4P33202 1483 aa0.05□□□□□ -2.4
UPF3YGR072W YFL041W-AQ3E817 63 aa0.03□□□□□ -2.4
UPF3YGR072W ERI1P62651 68 aaKnown RBP0.02□□□□□ -2.41
UPF3YGR072W NUP159P40477 1460 aa0.02□□□□□ -2.41
UPF3YGR072W PAI3P01094 68 aa0.01□□□□□ -2.41
UPF3YGR072W VTH1P40438 1549 aa0□□□□□ -2.41
UPF3YGR072W VTH2P40890 1549 aa0□□□□□ -2.41
UPF3YGR072W TOS6P48560 102 aa0□□□□□ -2.41
UPF3YGR072W DOP1Q03921 1698 aa-0.03□□□□□ -2.41
UPF3YGR072W IML1P47170 1584 aa-0.04□□□□□ -2.42
UPF3YGR072W TY1B-NL2Q99337 1749 aaKnown RBP-0.04□□□□□ -2.42
UPF3YGR072W UTP20P35194 2493 aaKnown RBP-0.05□□□□□ -2.42
UPF3YGR072W TY3B-GQ99315 1547 aa-0.06□□□□□ -2.42
UPF3YGR072W RPO21P04050 1733 aaKnown RBP-0.07□□□□□ -2.42
UPF3YGR072W ARO1P08566 1588 aaKnown RBP-0.07□□□□□ -2.42
UPF3YGR072W YSY6P38374 65 aa-0.08□□□□□ -2.42
UPF3YGR072W HAP1P0CE41 1502 aa-0.08□□□□□ -2.42
UPF3YGR072W RPS30AP0CX33 63 aaKnown RBP-0.1□□□□□ -2.43
UPF3YGR072W RPS30BP0CX34 63 aaKnown RBP-0.1□□□□□ -2.43
UPF3YGR072W DNF2Q12675 1612 aa-0.11□□□□□ -2.43
UPF3YGR072W YBR230W-AQ3E762 66 aa-0.11□□□□□ -2.43
UPF3YGR072W RPO31P04051 1460 aa-0.12□□□□□ -2.43
UPF3YGR072W IQG1Q12280 1495 aa-0.12□□□□□ -2.43
UPF3YGR072W SCC2Q04002 1493 aa-0.13□□□□□ -2.43
UPF3YGR072W YOL131WQ08270 108 aa-0.13□□□□□ -2.43
UPF3YGR072W RPS27BP38711 82 aa-0.15□□□□□ -2.43
UPF3YGR072W BCK1Q01389 1478 aa-0.16□□□□□ -2.43
UPF3YGR072W SPO14P36126 1683 aa-0.16□□□□□ -2.44
UPF3YGR072W FKS3Q04952 1785 aa-0.17□□□□□ -2.44
UPF3YGR072W YIL102C-AQ2V2P5 75 aa-0.17□□□□□ -2.44
UPF3YGR072W COA2Q3E823 68 aa-0.17□□□□□ -2.44
UPF3YGR072W VPS15P22219 1454 aa-0.18□□□□□ -2.44
UPF3YGR072W YGR146C-AQ8TGT9 53 aa-0.2□□□□□ -2.44
UPF3YGR072W TCB3Q03640 1545 aaKnown RBP-0.21□□□□□ -2.44
UPF3YGR072W YDR524C-BQ3E6R4 66 aa-0.21□□□□□ -2.44
UPF3YGR072W YLR157W-DP0CE99 70 aa-0.22□□□□□ -2.44
UPF3YGR072W YOL166W-AQ8TGJ1 51 aa-0.22□□□□□ -2.44
UPF3YGR072W TOR1P35169 2470 aa-0.23□□□□□ -2.45
UPF3YGR072W DNF1P32660 1571 aa-0.25□□□□□ -2.45
UPF3YGR072W RRP5Q05022 1729 aaKnown RBP-0.25□□□□□ -2.45
UPF3YGR072W MYO4P32492 1471 aa-0.26□□□□□ -2.45
UPF3YGR072W PDR12Q02785 1511 aa-0.28□□□□□ -2.45
UPF3YGR072W PDR15Q04182 1529 aaKnown RBP-0.28□□□□□ -2.45
UPF3YGR072W VMR1P38735 1592 aa-0.28□□□□□ -2.45
UPF3YGR072W YLL006W-AQ3E814 58 aa-0.29□□□□□ -2.46
UPF3YGR072W YGL258W-AQ3E740 77 aa-0.31□□□□□ -2.46
UPF3YGR072W VMA9Q3E7B6 73 aa-0.36□□□□□ -2.47
UPF3YGR072W YOR072W-BQ3E832 53 aa-0.38□□□□□ -2.47
UPF3YGR072W YBR056W-AI2HB52 66 aa-0.4□□□□□ -2.47
UPF3YGR072W YHR050W-AQ05451 56 aa-0.44□□□□□ -2.48
UPF3YGR072W SNQ2P32568 1501 aaKnown RBP-0.48□□□□□ -2.49
UPF3YGR072W YFR010W-AP0C5N0 62 aa-0.5□□□□□ -2.49
UPF3YGR072W YKL023C-AQ2V2P3 75 aa-0.5□□□□□ -2.49
UPF3YGR072W TY1B-DR4Q07793 1604 aa-0.51□□□□□ -2.49
UPF3YGR072W YOR192C-CQ3E736 78 aa-0.53□□□□□ -2.49
UPF3YGR072W DYN1P36022 4092 aa-0.54□□□□□ -2.5
UPF3YGR072W YOR093CQ12275 1648 aa-0.56□□□□□ -2.5
Retrieved 100 of 5,963 RNA–protein pairs in 358.3 ms