RNA–Protein interactions for RNA: YAL030W

SNC1, Transcript of Vesicle membrane receptor protein (v-SNARE), yeastyeast

Gene SNC1, Length 354 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytosol, Endoplasmic reticulum, Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SNC1YAL030W TY2B-FP0CX63 1770 aa0.5□□□□□ -2.33
SNC1YAL030W TY2B-GR2P0CX64 1770 aa0.5□□□□□ -2.33
SNC1YAL030W TY2B-BQ12491 1770 aa0.5□□□□□ -2.33
SNC1YAL030W YOR314WQ12506 109 aa0.5□□□□□ -2.33
SNC1YAL030W YDR381C-AQ3E6R5 114 aa0.49□□□□□ -2.33
SNC1YAL030W YBR032WP38223 100 aa0.48□□□□□ -2.33
SNC1YAL030W DOP1Q03921 1698 aa0.48□□□□□ -2.33
SNC1YAL030W FKS3Q04952 1785 aa0.47□□□□□ -2.33
SNC1YAL030W EDC1P53080 175 aaPredicted RBP0.46□□□□□ -2.34
SNC1YAL030W QCR9P22289 66 aa0.45□□□□□ -2.34
SNC1YAL030W SWM2P40342 146 aa0.45□□□□□ -2.34
SNC1YAL030W KOG1P38873 1557 aa0.45□□□□□ -2.34
SNC1YAL030W YDL022C-AP0C5L6 82 aa0.43□□□□□ -2.34
SNC1YAL030W YGR121W-AQ3E816 71 aa0.43□□□□□ -2.34
SNC1YAL030W RPO21P04050 1733 aaKnown RBP0.42□□□□□ -2.34
SNC1YAL030W LSM2P38203 95 aaKnown RBP0.42□□□□□ -2.34
SNC1YAL030W RRP5Q05022 1729 aaKnown RBP0.41□□□□□ -2.34
SNC1YAL030W SMC4Q12267 1418 aa0.4□□□□□ -2.34
SNC1YAL030W SEN1Q00416 2231 aaKnown RBP0.4□□□□□ -2.35
SNC1YAL030W YGR025WP53216 100 aa0.4□□□□□ -2.35
SNC1YAL030W ATP17Q06405 101 aa0.4□□□□□ -2.35
SNC1YAL030W YLR146W-AQ2V2P1 62 aa0.4□□□□□ -2.35
SNC1YAL030W YDR119W-AQ2V2P9 66 aa0.4□□□□□ -2.35
SNC1YAL030W YHR213W-AQ8TGT4 77 aa0.4□□□□□ -2.35
SNC1YAL030W ARO1P08566 1588 aaKnown RBP0.4□□□□□ -2.35
SNC1YAL030W IML1P47170 1584 aa0.4□□□□□ -2.35
SNC1YAL030W TIM12P32830 109 aa0.39□□□□□ -2.35
SNC1YAL030W PAU7P39545 55 aa0.39□□□□□ -2.35
SNC1YAL030W YGR035W-AQ45U48 73 aa0.39□□□□□ -2.35
SNC1YAL030W IRC20Q06554 1556 aa0.38□□□□□ -2.35
SNC1YAL030W NUP159P40477 1460 aa0.38□□□□□ -2.35
SNC1YAL030W YKL018C-AQ3E7A7 99 aa0.38□□□□□ -2.35
SNC1YAL030W YCR108CQ3E819 63 aa0.38□□□□□ -2.35
SNC1YAL030W YOR032W-AQ8TGS1 66 aa0.38□□□□□ -2.35
SNC1YAL030W MMS1Q06211 1407 aa0.38□□□□□ -2.35
SNC1YAL030W UFD4P33202 1483 aa0.37□□□□□ -2.35
SNC1YAL030W YBL044WP38194 122 aa0.37□□□□□ -2.35
SNC1YAL030W DNF2Q12675 1612 aa0.37□□□□□ -2.35
SNC1YAL030W SPO14P36126 1683 aa0.37□□□□□ -2.35
SNC1YAL030W DNF1P32660 1571 aa0.36□□□□□ -2.35
SNC1YAL030W OLI1P61829 76 aa0.36□□□□□ -2.35
SNC1YAL030W PAI3P01094 68 aa0.34□□□□□ -2.36
SNC1YAL030W SSS1P35179 80 aa0.34□□□□□ -2.36
SNC1YAL030W YDR246W-AQ3E763 66 aa0.34□□□□□ -2.36
SNC1YAL030W TCB3Q03640 1545 aaKnown RBP0.33□□□□□ -2.36
SNC1YAL030W SIP18P50263 79 aa0.32□□□□□ -2.36
SNC1YAL030W SCC2Q04002 1493 aa0.32□□□□□ -2.36
SNC1YAL030W TY3B-GQ99315 1547 aa0.32□□□□□ -2.36
SNC1YAL030W YBL039W-BP0C268 59 aa0.31□□□□□ -2.36
SNC1YAL030W YBR200W-AQ3E755 54 aa0.31□□□□□ -2.36
SNC1YAL030W YFL041W-AQ3E817 63 aa0.31□□□□□ -2.36
SNC1YAL030W HUB1Q6Q546 73 aa0.31□□□□□ -2.36
SNC1YAL030W RPS27AP35997 82 aaKnown RBP0.3□□□□□ -2.36
SNC1YAL030W ERI1P62651 68 aaKnown RBP0.3□□□□□ -2.36
SNC1YAL030W VTH1P40438 1549 aa0.29□□□□□ -2.36
SNC1YAL030W VTH2P40890 1549 aa0.29□□□□□ -2.36
SNC1YAL030W SPI1P40092 148 aa0.29□□□□□ -2.36
SNC1YAL030W YOR011W-AQ3E807 68 aa0.29□□□□□ -2.36
SNC1YAL030W YOR394C-AQ8TGJ0 55 aa0.29□□□□□ -2.36
SNC1YAL030W RPO31P04051 1460 aa0.29□□□□□ -2.36
SNC1YAL030W IQG1Q12280 1495 aa0.29□□□□□ -2.36
SNC1YAL030W YOR008C-AQ3E7B9 74 aa0.28□□□□□ -2.36
SNC1YAL030W YDR182W-AQ3E796 67 aa0.27□□□□□ -2.37
SNC1YAL030W VMR1P38735 1592 aa0.27□□□□□ -2.37
SNC1YAL030W YMR001C-AQ8TGS9 76 aa0.26□□□□□ -2.37
SNC1YAL030W HAP1P0CE41 1502 aa0.25□□□□□ -2.37
SNC1YAL030W MYO4P32492 1471 aa0.25□□□□□ -2.37
SNC1YAL030W YSY6P38374 65 aa0.25□□□□□ -2.37
SNC1YAL030W VPS15P22219 1454 aa0.24□□□□□ -2.37
SNC1YAL030W RPS30AP0CX33 63 aaKnown RBP0.22□□□□□ -2.37
SNC1YAL030W RPS30BP0CX34 63 aaKnown RBP0.22□□□□□ -2.37
SNC1YAL030W UTP20P35194 2493 aaKnown RBP0.21□□□□□ -2.38
SNC1YAL030W TOS6P48560 102 aa0.21□□□□□ -2.38
SNC1YAL030W YOL131WQ08270 108 aa0.21□□□□□ -2.38
SNC1YAL030W YIL102C-AQ2V2P5 75 aa0.21□□□□□ -2.38
SNC1YAL030W RPS29AP41057 56 aaKnown RBP0.2□□□□□ -2.38
SNC1YAL030W BCK1Q01389 1478 aa0.2□□□□□ -2.38
SNC1YAL030W PDR12Q02785 1511 aa0.18□□□□□ -2.38
SNC1YAL030W TY1B-DR4Q07793 1604 aa0.17□□□□□ -2.38
SNC1YAL030W YLR157W-DP0CE99 70 aa0.16□□□□□ -2.38
SNC1YAL030W PDR15Q04182 1529 aaKnown RBP0.16□□□□□ -2.38
SNC1YAL030W YBR230W-AQ3E762 66 aa0.15□□□□□ -2.39
SNC1YAL030W RPS27BP38711 82 aa0.13□□□□□ -2.39
SNC1YAL030W YBT1P32386 1661 aa0.13□□□□□ -2.39
SNC1YAL030W TOR1P35169 2470 aa0.13□□□□□ -2.39
SNC1YAL030W COA2Q3E823 68 aa0.11□□□□□ -2.39
SNC1YAL030W YOL166W-AQ8TGJ1 51 aa0.11□□□□□ -2.39
SNC1YAL030W YGR146C-AQ8TGT9 53 aa0.11□□□□□ -2.39
SNC1YAL030W USO1P25386 1790 aa0.11□□□□□ -2.39
SNC1YAL030W VMA9Q3E7B6 73 aa0.09□□□□□ -2.4
SNC1YAL030W YLL006W-AQ3E814 58 aa0.08□□□□□ -2.4
SNC1YAL030W YGL258W-AQ3E740 77 aa0.07□□□□□ -2.4
SNC1YAL030W NUP188P52593 1655 aaKnown RBP0.07□□□□□ -2.4
SNC1YAL030W YCF1P39109 1515 aaKnown RBP0.07□□□□□ -2.4
SNC1YAL030W YFR010W-AP0C5N0 62 aa0.06□□□□□ -2.4
SNC1YAL030W YDR524C-BQ3E6R4 66 aa0.06□□□□□ -2.4
SNC1YAL030W YOR093CQ12275 1648 aa0.05□□□□□ -2.4
SNC1YAL030W PDR5P33302 1511 aaKnown RBP0.05□□□□□ -2.4
SNC1YAL030W SNQ2P32568 1501 aaKnown RBP0.03□□□□□ -2.41
SNC1YAL030W CDC25P04821 1589 aa0.02□□□□□ -2.41
Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms