RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W URA2P07259 2214 aaKnown RBP0.89□□□□□ -2.27
SHR3YDL212W TOR1P35169 2470 aa0.89□□□□□ -2.27
SHR3YDL212W YHR214C-DP0CX93 97 aa0.88□□□□□ -2.27
SHR3YDL212W YBR072C-AQ3E794 53 aa0.88□□□□□ -2.27
SHR3YDL212W ESP1Q03018 1630 aa0.88□□□□□ -2.27
SHR3YDL212W YRF1-1P0CX20 1796 aa0.88□□□□□ -2.27
SHR3YDL212W YRF1-5P0CX21 1796 aa0.88□□□□□ -2.27
SHR3YDL212W YRF1-8P0CX22 1796 aa0.88□□□□□ -2.27
SHR3YDL212W TOM1Q03280 3268 aa0.88□□□□□ -2.27
SHR3YDL212W PRP8P33334 2413 aaKnown RBP0.87□□□□□ -2.27
SHR3YDL212W POL2P21951 2222 aaKnown RBP0.87□□□□□ -2.27
SHR3YDL212W RPL43AP0CX25 92 aaKnown RBP0.87□□□□□ -2.27
SHR3YDL212W RPL43BP0CX26 92 aa0.87□□□□□ -2.27
SHR3YDL212W AUA1P32450 94 aa0.87□□□□□ -2.27
SHR3YDL212W YDR381C-AQ3E6R5 114 aa0.87□□□□□ -2.27
SHR3YDL212W YHR213W-AQ8TGT4 77 aa0.87□□□□□ -2.27
SHR3YDL212W YDR010CQ12426 110 aa0.86□□□□□ -2.27
SHR3YDL212W YOR314WQ12506 109 aa0.86□□□□□ -2.27
SHR3YDL212W YPR145C-AQ2V2P0 78 aa0.86□□□□□ -2.27
SHR3YDL212W YKL065W-AQ2V2P2 73 aa0.86□□□□□ -2.27
SHR3YDL212W YDR119W-AQ2V2P9 66 aa0.86□□□□□ -2.27
SHR3YDL212W YNL042W-BQ3E7Z2 85 aa0.86□□□□□ -2.27
SHR3YDL212W YLR307C-AQ3E825 87 aa0.86□□□□□ -2.27
SHR3YDL212W TY4B-HP0C2J7 1802 aa0.85□□□□□ -2.27
SHR3YDL212W YAL065CO13511 128 aa0.85□□□□□ -2.27
SHR3YDL212W YLR157W-EP0CF00 54 aa0.85□□□□□ -2.27
SHR3YDL212W YHR173CP38864 112 aa0.85□□□□□ -2.27
SHR3YDL212W FMP27Q06179 2628 aa0.85□□□□□ -2.27
SHR3YDL212W PAU23Q07987 124 aa0.85□□□□□ -2.27
SHR3YDL212W PAU17Q12370 124 aa0.85□□□□□ -2.27
SHR3YDL212W MMS22Q06164 1454 aa0.85□□□□□ -2.27
SHR3YDL212W MDN1Q12019 4910 aaKnown RBP0.84□□□□□ -2.27
SHR3YDL212W TY1B-PR2P0C2J0 1756 aa0.84□□□□□ -2.27
SHR3YDL212W FPR2P32472 135 aa0.84□□□□□ -2.27
SHR3YDL212W PDX3P38075 228 aaKnown RBP0.84□□□□□ -2.27
SHR3YDL212W YOR105WQ08504 108 aa0.84□□□□□ -2.27
SHR3YDL212W YMR122W-AQ3E842 84 aa0.84□□□□□ -2.27
SHR3YDL212W NOP10Q6Q547 58 aaPredicted RBP0.84□□□□□ -2.27
SHR3YDL212W YRF1-2P40105 1681 aa0.84□□□□□ -2.28
SHR3YDL212W XRN1P22147 1528 aaKnown RBP0.84□□□□□ -2.28
SHR3YDL212W LSM2P38203 95 aaKnown RBP0.83□□□□□ -2.28
SHR3YDL212W SWM2P40342 146 aa0.83□□□□□ -2.28
SHR3YDL212W YIL156W-BQ2V2P4 73 aa0.83□□□□□ -2.28
SHR3YDL212W YBR201C-AQ2V2Q3 67 aa0.83□□□□□ -2.28
SHR3YDL212W Q0032Q9ZZX7 96 aa0.83□□□□□ -2.28
SHR3YDL212W COX7P10174 60 aa0.81□□□□□ -2.28
SHR3YDL212W YGR121W-AQ3E816 71 aa0.81□□□□□ -2.28
SHR3YDL212W NUP159P40477 1460 aa0.8□□□□□ -2.28
SHR3YDL212W MLP1Q02455 1875 aaKnown RBP0.8□□□□□ -2.28
SHR3YDL212W RPC10P40422 70 aa0.8□□□□□ -2.28
SHR3YDL212W DNF3Q12674 1656 aa0.8□□□□□ -2.28
SHR3YDL212W GCN1P33892 2672 aaKnown RBP0.79□□□□□ -2.28
SHR3YDL212W TY1B-BRQ12193 1756 aa0.79□□□□□ -2.28
SHR3YDL212W PAI3P01094 68 aa0.79□□□□□ -2.28
SHR3YDL212W QCR9P22289 66 aa0.79□□□□□ -2.28
SHR3YDL212W RPL38P49167 78 aaKnown RBP0.79□□□□□ -2.28
SHR3YDL212W YNL190WP53872 204 aa0.79□□□□□ -2.28
SHR3YDL212W ATP18P81450 59 aa0.79□□□□□ -2.28
SHR3YDL212W TY1B-NL2Q99337 1749 aaKnown RBP0.78□□□□□ -2.28
SHR3YDL212W YDL022C-AP0C5L6 82 aa0.78□□□□□ -2.28
SHR3YDL212W YNL198CP40166 100 aa0.78□□□□□ -2.28
SHR3YDL212W YOL097W-AQ3E7Y9 61 aa0.78□□□□□ -2.28
SHR3YDL212W YGR035W-AQ45U48 73 aa0.78□□□□□ -2.28
SHR3YDL212W TY1B-BLQ12490 1755 aa0.77□□□□□ -2.29
SHR3YDL212W ECM29P38737 1868 aa0.76□□□□□ -2.29
SHR3YDL212W RIM15P43565 1770 aa0.76□□□□□ -2.29
SHR3YDL212W SIN3P22579 1536 aa0.76□□□□□ -2.29
SHR3YDL212W TIM12P32830 109 aa0.76□□□□□ -2.29
SHR3YDL212W YOL164W-AQ3E7A5 60 aa0.76□□□□□ -2.29
SHR3YDL212W UTP20P35194 2493 aaKnown RBP0.75□□□□□ -2.29
SHR3YDL212W UFD4P33202 1483 aa0.75□□□□□ -2.29
SHR3YDL212W VPS13Q07878 3144 aa0.75□□□□□ -2.29
SHR3YDL212W CUP1-1P0CX80 61 aa0.75□□□□□ -2.29
SHR3YDL212W CUP1-2P0CX81 61 aa0.75□□□□□ -2.29
SHR3YDL212W BLM10P43583 2143 aa0.75□□□□□ -2.29
SHR3YDL212W SDH6Q3E785 79 aa0.75□□□□□ -2.29
SHR3YDL212W YFL041W-AQ3E817 63 aa0.75□□□□□ -2.29
SHR3YDL212W UTP10P42945 1769 aaKnown RBP0.75□□□□□ -2.29
SHR3YDL212W MOT1P32333 1867 aa0.74□□□□□ -2.29
SHR3YDL212W YJR107C-AP0CT86 78 aa0.74□□□□□ -2.29
SHR3YDL212W ATX1P38636 73 aa0.74□□□□□ -2.29
SHR3YDL212W SGF11Q03067 99 aa0.74□□□□□ -2.29
SHR3YDL212W TY1B-LR3P0C2I6 1755 aaKnown RBP0.74□□□□□ -2.29
SHR3YDL212W TY1B-PR3P0C2J1 1755 aaKnown RBP0.74□□□□□ -2.29
SHR3YDL212W MON2P48563 1636 aaPredicted RBP0.74□□□□□ -2.29
SHR3YDL212W FAS2P19097 1887 aaKnown RBP0.73□□□□□ -2.29
SHR3YDL212W DOP1Q03921 1698 aa0.73□□□□□ -2.29
SHR3YDL212W SPI1P40092 148 aa0.73□□□□□ -2.29
SHR3YDL212W STT4P37297 1900 aa0.73□□□□□ -2.29
SHR3YDL212W BPH1P25356 2167 aa0.73□□□□□ -2.29
SHR3YDL212W SSS1P35179 80 aa0.72□□□□□ -2.29
SHR3YDL212W YBR032WP38223 100 aa0.72□□□□□ -2.29
SHR3YDL212W ATP17Q06405 101 aa0.72□□□□□ -2.29
SHR3YDL212W YPR108W-AQ3E7B3 70 aa0.72□□□□□ -2.29
SHR3YDL212W TY2B-CP25384 1770 aa0.72□□□□□ -2.29
SHR3YDL212W TY2B-DR1Q12472 1770 aa0.72□□□□□ -2.29
SHR3YDL212W TY1B-DR6P0C2I3 1755 aa0.71□□□□□ -2.3
SHR3YDL212W TY1B-LR2P0C2I5 1755 aa0.71□□□□□ -2.3
SHR3YDL212W TY1B-JR2P47100 1755 aaKnown RBP0.71□□□□□ -2.3
SHR3YDL212W TY1B-MR1Q04214 1755 aa0.71□□□□□ -2.3
Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms