RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	ICS3	P47034	131 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	SNN1	P48232	102 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	ARL3	Q02804	198 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	RUB1	Q03919	77 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	DAD1	Q12248	94 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	YGR240C-A	Q3E786	66 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	FAS2	P19097	1887 aa	Known RBP	0.72	□□□□□ -2.29
NCL1	YBL024W	YMR321C	Q04898	105 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	OCA6	Q12454	224 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	HMRA2	P0CY13	119 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	LHP1	P33399	275 aa	Known RBP	0.71	□□□□□ -2.3
NCL1	YBL024W	LCL1	Q02786	101 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	YGL041C-B	Q3E750	60 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	NUP192	P47054	1683 aa		0.71	□□□□□ -2.3
NCL1	YBL024W	FKS3	Q04952	1785 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	YEA6	P39953	335 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	MRPS12	P53732	153 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	YLR307C-A	Q3E825	87 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	FIG2	P25653	1609 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	URA2	P07259	2214 aa	Known RBP	0.7	□□□□□ -2.3
NCL1	YBL024W	LYS2	P07702	1392 aa		0.7	□□□□□ -2.3
NCL1	YBL024W	PAU19	P0CE85	124 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	PAU3	P25610	124 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YJR128W	P47162	119 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YLR363W-A	Q3E747	85 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	APC1	P53886	1748 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YLR157W-E	P0CF00	54 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	GTT1	P40582	234 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YRF1-3	P0CX14	1859 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YRF1-7	P0CX15	1859 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	YRF1-6	P53819	1859 aa		0.69	□□□□□ -2.3
NCL1	YBL024W	TRA1	P38811	3744 aa		0.68	□□□□□ -2.3
NCL1	YBL024W	DYN1	P36022	4092 aa		0.68	□□□□□ -2.3
NCL1	YBL024W	VPS55	P47111	140 aa		0.68	□□□□□ -2.3
NCL1	YBL024W	FLO1	P32768	1537 aa		0.67	□□□□□ -2.3
NCL1	YBL024W	BUD23	P25627	275 aa	Predicted RBP	0.66	□□□□□ -2.3
NCL1	YBL024W	HUR1	P45820	110 aa		0.66	□□□□□ -2.3
NCL1	YBL024W	YDR524C-B	Q3E6R4	66 aa		0.66	□□□□□ -2.3
NCL1	YBL024W	YER137C	P40083	148 aa	Known RBP	0.65	□□□□□ -2.31
NCL1	YBL024W	YGR164W	P53291	111 aa		0.65	□□□□□ -2.31
NCL1	YBL024W	AUA1	P32450	94 aa		0.65	□□□□□ -2.31
NCL1	YBL024W	PAU16	P35994	123 aa		0.65	□□□□□ -2.31
NCL1	YBL024W	PAU15	P40585	124 aa		0.65	□□□□□ -2.31
NCL1	YBL024W	YLR419W	Q06698	1435 aa	Known RBP	0.64	□□□□□ -2.31
NCL1	YBL024W	YLR255C	O13574	117 aa		0.64	□□□□□ -2.31
NCL1	YBL024W	GNA1	P43577	159 aa	Predicted RBP	0.64	□□□□□ -2.31
NCL1	YBL024W	LSM6	Q06406	86 aa	Known RBP	0.64	□□□□□ -2.31
NCL1	YBL024W	MIC10	Q96VH5	97 aa		0.64	□□□□□ -2.31
NCL1	YBL024W	RPS12	P48589	143 aa	Known RBP	0.63	□□□□□ -2.31
NCL1	YBL024W	YMR103C	Q04436	120 aa		0.63	□□□□□ -2.31
NCL1	YBL024W	VMA21	P41806	77 aa		0.63	□□□□□ -2.31
NCL1	YBL024W	YCL048W-A	Q2V2Q2	79 aa		0.63	□□□□□ -2.31
NCL1	YBL024W	TY4B-H	P0C2J7	1802 aa		0.62	□□□□□ -2.31
NCL1	YBL024W	SWC7	Q06707	132 aa		0.62	□□□□□ -2.31
NCL1	YBL024W	POL2	P21951	2222 aa	Known RBP	0.62	□□□□□ -2.31
NCL1	YBL024W	YOS1	Q3E834	85 aa		0.61	□□□□□ -2.31
NCL1	YBL024W	PMD1	P32634	1753 aa		0.61	□□□□□ -2.31
NCL1	YBL024W	YCR101C	P25607	182 aa		0.61	□□□□□ -2.31
NCL1	YBL024W	YHR138C	P38841	114 aa	Predicted RBP	0.61	□□□□□ -2.31
NCL1	YBL024W	UBC4	P15731	148 aa		0.6	□□□□□ -2.31
NCL1	YBL024W	YOL118C	Q08259	102 aa		0.6	□□□□□ -2.31
NCL1	YBL024W	CCW14	O13547	238 aa		0.6	□□□□□ -2.31
NCL1	YBL024W	RGI1	P40043	161 aa	Predicted RBP	0.6	□□□□□ -2.31
NCL1	YBL024W	IMP2	P46972	177 aa		0.6	□□□□□ -2.31
NCL1	YBL024W	YDR210W	Q03482	75 aa		0.6	□□□□□ -2.31
NCL1	YBL024W	UBC5	P15732	148 aa		0.59	□□□□□ -2.32
NCL1	YBL024W	YMR090W	Q04304	227 aa	Known RBP	0.59	□□□□□ -2.32
NCL1	YBL024W	YBR090C	P38253	122 aa		0.58	□□□□□ -2.32
NCL1	YBL024W	GCV3	P39726	170 aa	Predicted RBP	0.58	□□□□□ -2.32
NCL1	YBL024W	YIL046W-A	Q3E7Z4	54 aa		0.58	□□□□□ -2.32
NCL1	YBL024W	YPL038W-A	Q3E7B4	63 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	BRR2	P32639	2163 aa	Known RBP	0.57	□□□□□ -2.32
NCL1	YBL024W	HKR1	P41809	1802 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	SRB6	P32570	121 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	SHU1	P38751	150 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	YIL086C	P40503	102 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	PAU5	P43575	122 aa		0.57	□□□□□ -2.32
NCL1	YBL024W	UTP10	P42945	1769 aa	Known RBP	0.56	□□□□□ -2.32
NCL1	YBL024W	YHR173C	P38864	112 aa		0.55	□□□□□ -2.32
NCL1	YBL024W	YDR010C	Q12426	110 aa		0.55	□□□□□ -2.32
NCL1	YBL024W	ECM29	P38737	1868 aa		0.55	□□□□□ -2.32
NCL1	YBL024W	RSM19	P53733	91 aa	Predicted RBP	0.55	□□□□□ -2.32
NCL1	YBL024W	YBR072C-A	Q3E794	53 aa		0.55	□□□□□ -2.32
NCL1	YBL024W	MIX14	Q04341	121 aa		0.54	□□□□□ -2.32
NCL1	YBL024W	YCR095W-A	Q3E787	52 aa		0.54	□□□□□ -2.32
NCL1	YBL024W	KSH1	Q8TGJ3	72 aa		0.54	□□□□□ -2.32
NCL1	YBL024W	FYV7	Q12247	151 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	BLM10	P43583	2143 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	ROX3	P25046	220 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	MPC2	P38857	129 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	COX19	Q3E731	98 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	YOL164W-A	Q3E7A5	60 aa		0.53	□□□□□ -2.32
NCL1	YBL024W	PAU6	P0CE90	120 aa		0.52	□□□□□ -2.33
NCL1	YBL024W	PAU18	P0CE91	120 aa		0.52	□□□□□ -2.33
NCL1	YBL024W	COX12	Q01519	83 aa		0.52	□□□□□ -2.33
NCL1	YBL024W	SNA2	P56508	79 aa		0.52	□□□□□ -2.33
NCL1	YBL024W	YOR289W	Q12012	251 aa	Predicted RBP	0.52	□□□□□ -2.33
NCL1	YBL024W	MRX7	P53869	86 aa		0.51	□□□□□ -2.33
NCL1	YBL024W	MRPL38	P35996	138 aa	Predicted RBP	0.5	□□□□□ -2.33
NCL1	YBL024W	RRT15	Q3E811	62 aa		0.5	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms