RNA–Protein interactions for RNA: YNL021W

HDA1, Transcript of Putative catalytic subunit of a class II histone deacetylase complex, yeast

Gene HDA1, Length 2,121 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HDA1	YNL021W	YGL258W-A	Q3E740	77 aa		5.06	□□□□□ -1.6
HDA1	YNL021W	ATP20	Q12233	115 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	YOR097C	Q12274	175 aa	Predicted RBP	5.05	□□□□□ -1.6
HDA1	YNL021W	SFT2	P38166	215 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	ERV14	P53173	138 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	HAL1	Q01766	294 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	YPR063C	Q12160	140 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	YOS1	Q3E834	85 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	IRA1	P18963	3092 aa		5.05	□□□□□ -1.6
HDA1	YNL021W	POR1	P04840	283 aa	Known RBP	5.04	□□□□□ -1.6
HDA1	YNL021W	DSK2	P48510	373 aa		5.04	□□□□□ -1.6
HDA1	YNL021W	YGR269W	P40326	108 aa		5.03	□□□□□ -1.6
HDA1	YNL021W	RPS25B	P0C0T4	108 aa	Known RBP	5.03	□□□□□ -1.6
HDA1	YNL021W	TMC1	Q08422	150 aa	Predicted RBP	5.03	□□□□□ -1.6
HDA1	YNL021W	RPS25A	Q3E792	108 aa	Predicted RBP	5.03	□□□□□ -1.6
HDA1	YNL021W	GCN1	P33892	2672 aa	Known RBP	5.03	□□□□□ -1.6
HDA1	YNL021W	HAP3	P13434	144 aa		5.02	□□□□□ -1.61
HDA1	YNL021W	QCR9	P22289	66 aa		5.02	□□□□□ -1.61
HDA1	YNL021W	NSA2	P40078	261 aa	Known RBP	5.02	□□□□□ -1.61
HDA1	YNL021W	YNR064C	P53750	290 aa		5.02	□□□□□ -1.61
HDA1	YNL021W	PAU4	P53427	120 aa		5.02	□□□□□ -1.61
HDA1	YNL021W	YML122C	Q03207	126 aa		5.01	□□□□□ -1.61
HDA1	YNL021W	YCL048W-A	Q2V2Q2	79 aa		5.01	□□□□□ -1.61
HDA1	YNL021W	YGR164W	P53291	111 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU1	P0CE88	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU14	P0CE89	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU6	P0CE90	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU18	P0CE91	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU8	P0CE92	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU11	P0CE93	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	NOP1	P15646	327 aa	Known RBP	5	□□□□□ -1.61
HDA1	YNL021W	FPR2	P32472	135 aa		5	□□□□□ -1.61
HDA1	YNL021W	ATG8	P38182	117 aa	RIP-Chip data	5	□□□□□ -1.61	not detected
HDA1	YNL021W	PAU13	P38725	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU10	Q03050	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	AVO2	Q04749	426 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU20	Q08322	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	POC4	Q12245	148 aa	Predicted RBP	5	□□□□□ -1.61
HDA1	YNL021W	YPR145C-A	Q2V2P0	78 aa		5	□□□□□ -1.61
HDA1	YNL021W	PAU9	Q3E770	120 aa		5	□□□□□ -1.61
HDA1	YNL021W	RAD6	P06104	172 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	DDR48	P18899	430 aa	Known RBP	4.99	□□□□□ -1.61
HDA1	YNL021W	YEL045C	P32616	141 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	MRPS9	P38120	278 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	VMA21	P41806	77 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	YGR026W	P53217	278 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	YMR007W	Q03675	126 aa		4.99	□□□□□ -1.61
HDA1	YNL021W	MIX17	Q03667	156 aa		4.98	□□□□□ -1.61
HDA1	YNL021W	SHH3	Q04487	196 aa		4.98	□□□□□ -1.61
HDA1	YNL021W	YOR376W-A	Q3E805	51 aa		4.98	□□□□□ -1.61
HDA1	YNL021W	YCR050C	P25630	102 aa		4.97	□□□□□ -1.61
HDA1	YNL021W	MIC27	P50945	234 aa		4.97	□□□□□ -1.61
HDA1	YNL021W	HMRA1	P0CY11	126 aa		4.97	□□□□□ -1.61
HDA1	YNL021W	PAM17	P36147	197 aa		4.97	□□□□□ -1.61
HDA1	YNL021W	PAU15	P40585	124 aa		4.97	□□□□□ -1.61
HDA1	YNL021W	YIR020C	P40575	100 aa		4.96	□□□□□ -1.62
HDA1	YNL021W	DAN1	P47178	298 aa		4.96	□□□□□ -1.62
HDA1	YNL021W	RPS22A	P0C0W1	130 aa	Known RBP	4.96	□□□□□ -1.62
HDA1	YNL021W	RRT1	P38192	103 aa		4.96	□□□□□ -1.62
HDA1	YNL021W	YER135C	P40082	130 aa		4.95	□□□□□ -1.62
HDA1	YNL021W	LST8	P41318	303 aa		4.95	□□□□□ -1.62
HDA1	YNL021W	YNR077C	P53758	84 aa		4.95	□□□□□ -1.62
HDA1	YNL021W	CSI2	Q08054	341 aa		4.95	□□□□□ -1.62
HDA1	YNL021W	YDR029W	Q12111	104 aa		4.95	□□□□□ -1.62
HDA1	YNL021W	YKR032W	P36127	104 aa		4.94	□□□□□ -1.62
HDA1	YNL021W	HSP10	P38910	106 aa		4.94	□□□□□ -1.62
HDA1	YNL021W	YHP1	Q04116	353 aa		4.94	□□□□□ -1.62
HDA1	YNL021W	SOD1	P00445	154 aa	Known RBP	4.93	□□□□□ -1.62
HDA1	YNL021W	RPL43A	P0CX25	92 aa	Known RBP	4.93	□□□□□ -1.62
HDA1	YNL021W	RPL43B	P0CX26	92 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	YKR045C	P36138	183 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	YBL071C	P38185	102 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	CYB5	P40312	120 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	MRPS8	Q03799	155 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	TEL1	P38110	2787 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	PRP8	P33334	2413 aa	Known RBP	4.93	□□□□□ -1.62
HDA1	YNL021W	YGL010W	P25338	174 aa		4.93	□□□□□ -1.62
HDA1	YNL021W	YBR013C	P38215	129 aa		4.92	□□□□□ -1.62
HDA1	YNL021W	KSH1	Q8TGJ3	72 aa		4.92	□□□□□ -1.62
HDA1	YNL021W	YAL064W	P39711	94 aa		4.91	□□□□□ -1.62
HDA1	YNL021W	SPG1	P50088	95 aa		4.91	□□□□□ -1.62
HDA1	YNL021W	BPH1	P25356	2167 aa		4.91	□□□□□ -1.62
HDA1	YNL021W	TOR1	P35169	2470 aa		4.91	□□□□□ -1.62
HDA1	YNL021W	FZF1	P32805	299 aa		4.9	□□□□□ -1.62
HDA1	YNL021W	LSM2	P38203	95 aa	Known RBP	4.9	□□□□□ -1.62
HDA1	YNL021W	PAU5	P43575	122 aa		4.9	□□□□□ -1.62
HDA1	YNL021W	YJL027C	P47063	138 aa	Predicted RBP	4.9	□□□□□ -1.62
HDA1	YNL021W	YOR381W-A	Q3E804	55 aa		4.9	□□□□□ -1.62
HDA1	YNL021W	PAU19	P0CE85	124 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	PAU21	P0CE86	164 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	PAU22	P0CE87	164 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	PAU3	P25610	124 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	SEN15	Q04675	128 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	Q0297	Q9ZZV8	51 aa		4.9	□□□□□ -1.63
HDA1	YNL021W	CUP1-1	P0CX80	61 aa		4.89	□□□□□ -1.63
HDA1	YNL021W	CUP1-2	P0CX81	61 aa		4.89	□□□□□ -1.63
HDA1	YNL021W	MRPL38	P35996	138 aa	Predicted RBP	4.89	□□□□□ -1.63
HDA1	YNL021W	MRPL11	P36521	249 aa	Predicted RBP	4.89	□□□□□ -1.63
HDA1	YNL021W	YHR173C	P38864	112 aa		4.89	□□□□□ -1.63
HDA1	YNL021W	YIL163C	P40448	117 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 67.5 ms