RNA–Protein interactions for RNA: YDL088C

ASM4, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene ASM4, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ASM4	YDL088C	GSC2	P40989	1895 aa		0.81	□□□□□ -2.28
ASM4	YDL088C	HHY1	P39982	102 aa		0.81	□□□□□ -2.28
ASM4	YDL088C	TY4B-J	P47024	1803 aa		0.81	□□□□□ -2.28
ASM4	YDL088C	YMR141C	P40211	102 aa		0.8	□□□□□ -2.28
ASM4	YDL088C	IMP2	P46972	177 aa		0.8	□□□□□ -2.28
ASM4	YDL088C	SNA2	P56508	79 aa		0.8	□□□□□ -2.28
ASM4	YDL088C	YDR029W	Q12111	104 aa		0.8	□□□□□ -2.28
ASM4	YDL088C	KSH1	Q8TGJ3	72 aa		0.8	□□□□□ -2.28
ASM4	YDL088C	YCR095W-A	Q3E787	52 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	SUS1	Q6WNK7	96 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	YRF1-3	P0CX14	1859 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	YRF1-7	P0CX15	1859 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	HMRA1	P0CY11	126 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	ROX3	P25046	220 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	PAU5	P43575	122 aa		0.79	□□□□□ -2.28
ASM4	YDL088C	HFA1	P32874	2273 aa		0.78	□□□□□ -2.28
ASM4	YDL088C	MRP17	P28778	131 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	YHL005C	P38752	130 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	GCV3	P39726	170 aa	Predicted RBP	0.78	□□□□□ -2.29
ASM4	YDL088C	COX12	Q01519	83 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	LCL1	Q02786	101 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	YPL038W-A	Q3E7B4	63 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	MHF2	Q3E829	80 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	YCR075W-A	Q3E830	75 aa		0.78	□□□□□ -2.29
ASM4	YDL088C	SNU13	P39990	126 aa	Known RBP	0.77	□□□□□ -2.29
ASM4	YDL088C	YJR128W	P47162	119 aa		0.77	□□□□□ -2.29
ASM4	YDL088C	MRPS12	P53732	153 aa		0.77	□□□□□ -2.29
ASM4	YDL088C	SWR1	Q05471	1514 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	RPA190	P10964	1664 aa	Known RBP	0.76	□□□□□ -2.29
ASM4	YDL088C	ECM12	O13529	151 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	RPL43A	P0CX25	92 aa	Known RBP	0.76	□□□□□ -2.29
ASM4	YDL088C	RPL43B	P0CX26	92 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	MRX7	P53869	86 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	NHP10	Q03435	203 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	SRB8	P25648	1427 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	PDR10	P51533	1564 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	YRF1-6	P53819	1859 aa		0.76	□□□□□ -2.29
ASM4	YDL088C	URB1	P34241	1764 aa	Known RBP	0.76	□□□□□ -2.29
ASM4	YDL088C	CCW14	O13547	238 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	RSM18	P40033	138 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	YIL086C	P40503	102 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	RPL37A	P49166	88 aa	Known RBP	0.75	□□□□□ -2.29
ASM4	YDL088C	PAU20	Q08322	120 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	RRT15	Q3E811	62 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	SLH1	P53327	1967 aa	Known RBP	0.75	□□□□□ -2.29
ASM4	YDL088C	BPT1	P14772	1559 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	NTE1	Q04958	1679 aa		0.75	□□□□□ -2.29
ASM4	YDL088C	PAU1	P0CE88	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU14	P0CE89	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU6	P0CE90	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU18	P0CE91	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU8	P0CE92	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU11	P0CE93	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	YBL071C	P38185	102 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU13	P38725	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	SHU1	P38751	150 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	SPC1	P46965	94 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU10	Q03050	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	YGL194C-A	Q2V2P6	80 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	YOR034C-A	Q3E735	80 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	PAU9	Q3E770	120 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	AIM19	P40502	157 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	YDR042C	Q03205	200 aa		0.74	□□□□□ -2.29
ASM4	YDL088C	LTE1	P07866	1435 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	SSN2	P38931	1420 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	YBR292C	P38357	123 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	MPC2	P38857	129 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	YHR173C	P38864	112 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	PAU4	P53427	120 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	SCP1	Q08873	200 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	COX19	Q3E731	98 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	YBR072C-A	Q3E794	53 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	YNR034W-A	Q3E841	98 aa		0.73	□□□□□ -2.29
ASM4	YDL088C	GDB1	Q06625	1536 aa		0.72	□□□□□ -2.29
ASM4	YDL088C	YDR210W	Q03482	75 aa		0.72	□□□□□ -2.29
ASM4	YDL088C	ICY1	Q04329	127 aa		0.72	□□□□□ -2.29
ASM4	YDL088C	ESC1	Q03661	1658 aa	Known RBP	0.71	□□□□□ -2.3
ASM4	YDL088C	YLR255C	O13574	117 aa		0.71	□□□□□ -2.3
ASM4	YDL088C	RPL37B	P51402	88 aa	Known RBP	0.71	□□□□□ -2.3
ASM4	YDL088C	YMR082C	Q04276	118 aa		0.71	□□□□□ -2.3
ASM4	YDL088C	YER188C-A	P0C0V2	99 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	NHP2	P32495	156 aa	Predicted RBP	0.7	□□□□□ -2.3
ASM4	YDL088C	MRPL38	P35996	138 aa	Predicted RBP	0.7	□□□□□ -2.3
ASM4	YDL088C	BSC4	P53841	131 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	BNI1	P41832	1953 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	YRF1-1	P0CX20	1796 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	YRF1-5	P0CX21	1796 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	YRF1-8	P0CX22	1796 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	YLR307C-A	Q3E825	87 aa		0.7	□□□□□ -2.3
ASM4	YDL088C	SEC7	P11075	2009 aa	Known RBP	0.69	□□□□□ -2.3
ASM4	YDL088C	MYO1	P08964	1928 aa		0.69	□□□□□ -2.3
ASM4	YDL088C	YLR157W-E	P0CF00	54 aa		0.69	□□□□□ -2.3
ASM4	YDL088C	PDX3	P38075	228 aa	Known RBP	0.69	□□□□□ -2.3
ASM4	YDL088C	LAA1	P39526	2014 aa		0.69	□□□□□ -2.3
ASM4	YDL088C	SEC16	P48415	2195 aa	Known RBP	0.69	□□□□□ -2.3
ASM4	YDL088C	YDR010C	Q12426	110 aa		0.69	□□□□□ -2.3
ASM4	YDL088C	POL1	P13382	1468 aa		0.69	□□□□□ -2.3
ASM4	YDL088C	TY4B-H	P0C2J7	1802 aa		0.68	□□□□□ -2.3
ASM4	YDL088C	RPS11A	P0CX47	156 aa	Known RBP	0.68	□□□□□ -2.3
ASM4	YDL088C	RPS11B	P0CX48	156 aa	Known RBP	0.68	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 59.4 ms