RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	ERV14	P53173	138 aa		0.85	□□□□□ -2.27
NCL1	YBL024W	YOR072W	Q08486	104 aa		0.85	□□□□□ -2.27
NCL1	YBL024W	YLR118C	Q12354	227 aa		0.85	□□□□□ -2.27
NCL1	YBL024W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.85	□□□□□ -2.27
NCL1	YBL024W	KTI11	Q3E840	82 aa		0.85	□□□□□ -2.27
NCL1	YBL024W	CAT8	P39113	1433 aa		0.85	□□□□□ -2.27
NCL1	YBL024W	FMP27	Q06179	2628 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	VTH1	P40438	1549 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	VTH2	P40890	1549 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	PFY1	P07274	126 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	YKL044W	P36092	106 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	VMA7	P39111	118 aa		0.84	□□□□□ -2.27
NCL1	YBL024W	YJL009W	P47078	108 aa		0.84	□□□□□ -2.28
NCL1	YBL024W	WIP1	Q2V2P8	89 aa		0.84	□□□□□ -2.28
NCL1	YBL024W	PDR12	Q02785	1511 aa		0.83	□□□□□ -2.28
NCL1	YBL024W	TY1B-DR3	Q99231	1755 aa		0.83	□□□□□ -2.28
NCL1	YBL024W	YSF3	P0C074	85 aa	Predicted RBP	0.83	□□□□□ -2.28
NCL1	YBL024W	AIM11	P87275	137 aa		0.83	□□□□□ -2.28
NCL1	YBL024W	FRQ1	Q06389	190 aa		0.83	□□□□□ -2.28
NCL1	YBL024W	RPL36B	O14455	100 aa	Known RBP	0.82	□□□□□ -2.28
NCL1	YBL024W	RPL36A	P05745	100 aa	Predicted RBP	0.82	□□□□□ -2.28
NCL1	YBL024W	GSP1	P32835	219 aa	Known RBP	0.82	□□□□□ -2.28
NCL1	YBL024W	AIM36	Q03798	255 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	GSC2	P40989	1895 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	YBR013C	P38215	129 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	SNF11	P38956	169 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	MIC27	P50945	234 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	GPI19	Q04082	140 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	YLR194C	Q05777	254 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	LDB18	Q07887	179 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	YHR213W-B	Q8TGK1	99 aa		0.82	□□□□□ -2.28
NCL1	YBL024W	MLP2	P40457	1679 aa		0.81	□□□□□ -2.28
NCL1	YBL024W	NUP188	P52593	1655 aa	Known RBP	0.81	□□□□□ -2.28
NCL1	YBL024W	YER188C-A	P0C0V2	99 aa		0.81	□□□□□ -2.28
NCL1	YBL024W	FIT3	Q08907	204 aa		0.81	□□□□□ -2.28
NCL1	YBL024W	FCF2	Q12035	217 aa	Predicted RBP	0.81	□□□□□ -2.28
NCL1	YBL024W	RPB11	P38902	120 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	YIL014C-A	Q02598	104 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	IRA1	P18963	3092 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	YIL163C	P40448	117 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	YFR035C	P43608	114 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	PAU12	P53343	120 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	SPC24	Q04477	213 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	HPA2	Q06592	156 aa		0.8	□□□□□ -2.28
NCL1	YBL024W	ADK1	P07170	222 aa	Known RBP	0.79	□□□□□ -2.28
NCL1	YBL024W	MVB12	P42939	101 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	HUG1	Q6Q5K6	68 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	IRA2	P19158	3079 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	YHR130C	P38834	111 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	APS2	Q00381	147 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	YLR042C	Q07990	161 aa		0.79	□□□□□ -2.28
NCL1	YBL024W	RPO41	P13433	1351 aa	Known RBP	0.79	□□□□□ -2.28
NCL1	YBL024W	YJL197C-A	P0C5P0	93 aa		0.78	□□□□□ -2.28
NCL1	YBL024W	YMR141C	P40211	102 aa		0.78	□□□□□ -2.28
NCL1	YBL024W	YOR097C	Q12274	175 aa	Predicted RBP	0.78	□□□□□ -2.28
NCL1	YBL024W	COA6	Q3E846	104 aa		0.78	□□□□□ -2.28
NCL1	YBL024W	SEC7	P11075	2009 aa	Known RBP	0.78	□□□□□ -2.28
NCL1	YBL024W	SNF2	P22082	1703 aa		0.78	□□□□□ -2.29
NCL1	YBL024W	GEA1	P47102	1408 aa	Predicted RBP	0.78	□□□□□ -2.29
NCL1	YBL024W	YAR029W	P39549	74 aa		0.77	□□□□□ -2.29
NCL1	YBL024W	TDA2	P40045	126 aa		0.77	□□□□□ -2.29
NCL1	YBL024W	MED11	Q99278	115 aa		0.77	□□□□□ -2.29
NCL1	YBL024W	SEC16	P48415	2195 aa	Known RBP	0.77	□□□□□ -2.29
NCL1	YBL024W	EMP24	P32803	203 aa	Known RBP	0.77	□□□□□ -2.29
NCL1	YBL024W	YPL261C	Q08976	102 aa		0.77	□□□□□ -2.29
NCL1	YBL024W	YCR099C	P25657	155 aa		0.76	□□□□□ -2.29
NCL1	YBL024W	YIR021W-A	Q3E739	70 aa		0.76	□□□□□ -2.29
NCL1	YBL024W	OST5	Q92316	86 aa		0.76	□□□□□ -2.29
NCL1	YBL024W	KRE5	P22023	1365 aa		0.76	□□□□□ -2.29
NCL1	YBL024W	RPL22A	P05749	121 aa	Known RBP	0.76	□□□□□ -2.29
NCL1	YBL024W	PAM16	P42949	149 aa		0.76	□□□□□ -2.29
NCL1	YBL024W	URB1	P34241	1764 aa	Known RBP	0.75	□□□□□ -2.29
NCL1	YBL024W	COX23	P38824	151 aa		0.75	□□□□□ -2.29
NCL1	YBL024W	YER187W	P40102	141 aa		0.75	□□□□□ -2.29
NCL1	YBL024W	PCC1	Q3E833	88 aa		0.75	□□□□□ -2.29
NCL1	YBL024W	ENV10	Q99382	181 aa		0.75	□□□□□ -2.29
NCL1	YBL024W	RRP5	Q05022	1729 aa	Known RBP	0.75	□□□□□ -2.29
NCL1	YBL024W	MRPL31	P14063	131 aa	Predicted RBP	0.74	□□□□□ -2.29
NCL1	YBL024W	POR2	P40478	281 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	YLR285C-A	Q3E771	56 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	MEC1	P38111	2368 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	TY4B-J	P47024	1803 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	YOR304C-A	O14468	76 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	PAU2	P32612	120 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	SRX1	P36077	127 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	PAU24	P38155	120 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	CYB5	P40312	120 aa		0.74	□□□□□ -2.29
NCL1	YBL024W	MDN1	Q12019	4910 aa	Known RBP	0.73	□□□□□ -2.29
NCL1	YBL024W	YIR020C	P40575	100 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	RTR2	Q12378	196 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.73	□□□□□ -2.29
NCL1	YBL024W	YER039C-A	P0CD97	72 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	RPL43A	P0CX25	92 aa	Known RBP	0.73	□□□□□ -2.29
NCL1	YBL024W	RPL43B	P0CX26	92 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	RPL22B	P56628	122 aa	Known RBP	0.73	□□□□□ -2.29
NCL1	YBL024W	YOR034C-A	Q3E735	80 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	YLR365W	Q7LIF2	110 aa		0.73	□□□□□ -2.29
NCL1	YBL024W	LAA1	P39526	2014 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	CSF1	Q12150	2958 aa		0.72	□□□□□ -2.29
NCL1	YBL024W	RIM15	P43565	1770 aa		0.72	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms