Protein–RNA interactions for Protein: P38902

RPB11, DNA-directed RNA polymerase II subunit RPB11, yeastyeast

Predictions only

Length 120 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPB11P38902 NSR1YGR159C 1245 nt15.49■□□□□ 0.07
RPB11P38902 YML009W-BYML009W-B 477 nt15.14■□□□□ 0.01
RPB11P38902 NOP1YDL014W 984 nt14.57□□□□□ -0.08
RPB11P38902 MDJ1YFL016C 1536 nt14.17□□□□□ -0.14
RPB11P38902 YJL027CYJL027C 417 nt13.09□□□□□ -0.31
RPB11P38902 YKL036CYKL036C 393 nt13□□□□□ -0.33
RPB11P38902 SRX1YKL086W 384 nt12.73□□□□□ -0.37
RPB11P38902 Q0297Q0297 156 nt12.61□□□□□ -0.39
RPB11P38902 SSA3YBL075C 1950 nt12.6□□□□□ -0.39
RPB11P38902 YBR190WYBR190W 312 nt12.35□□□□□ -0.43
RPB11P38902 DBP2YNL112W 1641 nt12.34□□□□□ -0.43
RPB11P38902 RTC3YHR087W 336 nt12.01□□□□□ -0.49
RPB11P38902 YCR051WYCR051W 669 nt11.99□□□□□ -0.49
RPB11P38902 TRN1tP(UGG)A 72 nt11.79□□□□□ -0.52
RPB11P38902 SUF9tP(UGG)F 72 nt11.79□□□□□ -0.52
RPB11P38902 SUF8tP(UGG)H 72 nt11.79□□□□□ -0.52
RPB11P38902 tP(UGG)LtP(UGG)L 72 nt11.79□□□□□ -0.52
RPB11P38902 SUF7tP(UGG)M 72 nt11.79□□□□□ -0.52
RPB11P38902 tP(UGG)N1tP(UGG)N1 72 nt11.79□□□□□ -0.52
RPB11P38902 tP(UGG)N2tP(UGG)N2 72 nt11.79□□□□□ -0.52
RPB11P38902 tP(UGG)O1tP(UGG)O1 72 nt11.79□□□□□ -0.52
RPB11P38902 SUF11tP(UGG)O2 72 nt11.79□□□□□ -0.52
RPB11P38902 PUT4YOR348C 1884 nt11.68□□□□□ -0.54
RPB11P38902 SCS3YGL126W 1143 nt11.58□□□□□ -0.56
RPB11P38902 CCC1YLR220W 969 nt11.58□□□□□ -0.56
RPB11P38902 RVS167YDR388W 1449 nt11.52□□□□□ -0.56
RPB11P38902 SCJ1YMR214W 1134 nt11.34□□□□□ -0.59
RPB11P38902 RPP1BYDL130W 321 nt11.3□□□□□ -0.6
RPB11P38902 YOL085CYOL085C 342 nt11.25□□□□□ -0.61
RPB11P38902 POA1YBR022W 534 nt11.25□□□□□ -0.61
RPB11P38902 ARE1YCR048W 1833 nt11.24□□□□□ -0.61
RPB11P38902 BSC6YOL137W 1494 nt11.15□□□□□ -0.62
RPB11P38902 YHR049C-AYHR049C-A 297 nt11.13□□□□□ -0.63
RPB11P38902 PKP1YIL042C 1185 nt11.1□□□□□ -0.63
RPB11P38902 SPT5YML010W 3192 nt11.1□□□□□ -0.63
RPB11P38902 SSA4YER103W 1929 nt11.09□□□□□ -0.63
RPB11P38902 SAH1YER043C 1350 nt11.04□□□□□ -0.64
RPB11P38902 SHR5YOL110W 714 nt11.02□□□□□ -0.65
RPB11P38902 OPI9YLR338W 858 nt10.99□□□□□ -0.65
RPB11P38902 tP(UGG)O3tP(UGG)O3 72 nt10.98□□□□□ -0.65
RPB11P38902 URN1YPR152C 1398 nt10.98□□□□□ -0.65
RPB11P38902 PET122YER153C 765 nt10.82□□□□□ -0.68
RPB11P38902 BUD23YCR047C 828 nt10.81□□□□□ -0.68
RPB11P38902 DEP1YAL013W 1218 nt10.78□□□□□ -0.68
RPB11P38902 RPN10YHR200W 807 nt10.75□□□□□ -0.69
RPB11P38902 BDF1YLR399C 2061 nt10.71□□□□□ -0.69
RPB11P38902 PUN1YLR414C 792 nt10.7□□□□□ -0.7
RPB11P38902 YDJ1YNL064C 1230 nt10.65□□□□□ -0.7
RPB11P38902 YNL208WYNL208W 600 nt10.63□□□□□ -0.71
RPB11P38902 NAB2YGL122C 1578 nt10.62□□□□□ -0.71
RPB11P38902 PTC2YER089C 1395 nt10.62□□□□□ -0.71
RPB11P38902 SCR1SCR1 522 nt10.61□□□□□ -0.71
RPB11P38902 TAT1YBR069C 1860 nt10.59□□□□□ -0.71
RPB11P38902 MEP2YNL142W 1500 nt10.56□□□□□ -0.72
RPB11P38902 PAC11YDR488C 1602 nt10.49□□□□□ -0.73
RPB11P38902 YJL225CYJL225C 5277 nt10.47□□□□□ -0.73
RPB11P38902 RRN5YLR141W 1092 nt10.46□□□□□ -0.73
RPB11P38902 YJR018WYJR018W 363 nt10.45□□□□□ -0.74
RPB11P38902 GAR1YHR089C 618 nt10.43□□□□□ -0.74
RPB11P38902 FIS1YIL065C 468 nt10.35□□□□□ -0.75
RPB11P38902 DAL1YIR027C 1383 nt10.34□□□□□ -0.75
RPB11P38902 DCW1YKL046C 1350 nt10.31□□□□□ -0.76
RPB11P38902 YMR090WYMR090W 684 nt10.3□□□□□ -0.76
RPB11P38902 YPS1YLR120C 1710 nt10.27□□□□□ -0.77
RPB11P38902 FPR4YLR449W 1179 nt10.26□□□□□ -0.77
RPB11P38902 YER088W-BYER088W-B 147 nt10.25□□□□□ -0.77
RPB11P38902 YBR220CYBR220C 1683 nt10.25□□□□□ -0.77
RPB11P38902 PHO4YFR034C 939 nt10.22□□□□□ -0.77
RPB11P38902 ATS1YAL020C 1002 nt10.22□□□□□ -0.77
RPB11P38902 INM2YDR287W 879 nt10.21□□□□□ -0.77
RPB11P38902 YHR165W-AYHR165W-A 312 nt10.21□□□□□ -0.77
RPB11P38902 EMI2YDR516C 1503 nt10.21□□□□□ -0.78
RPB11P38902 YJR120WYJR120W 351 nt10.18□□□□□ -0.78
RPB11P38902 NVJ2YPR091C 2313 nt10.16□□□□□ -0.78
RPB11P38902 RDN37-1RDN37-1 5354 nt10.15□□□□□ -0.78
RPB11P38902 RDN37-2RDN37-2 5354 nt10.15□□□□□ -0.78
RPB11P38902 TIR1YER011W 765 nt10.13□□□□□ -0.79
RPB11P38902 RPP2BYDR382W 333 nt10.12□□□□□ -0.79
RPB11P38902 YDR095CYDR095C 411 nt10.11□□□□□ -0.79
RPB11P38902 RSB1YOR049C 1065 nt10.11□□□□□ -0.79
RPB11P38902 SDH1YKL148C 1923 nt10.09□□□□□ -0.79
RPB11P38902 YDL221WYDL221W 552 nt10.09□□□□□ -0.79
RPB11P38902 SSA1YAL005C 1929 nt10.09□□□□□ -0.79
RPB11P38902 SEC11YIR022W 504 nt10.08□□□□□ -0.8
RPB11P38902 PCH2YBR186W 1695 nt10.07□□□□□ -0.8
RPB11P38902 GUT2YIL155C 1950 nt10.02□□□□□ -0.81
RPB11P38902 YBL100CYBL100C 315 nt9.96□□□□□ -0.82
RPB11P38902 RPP2AYOL039W 321 nt9.93□□□□□ -0.82
RPB11P38902 SCC4YER147C 1875 nt9.93□□□□□ -0.82
RPB11P38902 CAC2YML102W 1407 nt9.91□□□□□ -0.82
RPB11P38902 PTP1YDL230W 1008 nt9.89□□□□□ -0.83
RPB11P38902 ALF1YNL148C 765 nt9.86□□□□□ -0.83
RPB11P38902 BDH2YAL061W 1254 nt9.84□□□□□ -0.83
RPB11P38902 FUN26YAL022C 1554 nt9.82□□□□□ -0.84
RPB11P38902 SRB2YHR041C 633 nt9.8□□□□□ -0.84
RPB11P38902 IRC15YPL017C 1500 nt9.79□□□□□ -0.84
RPB11P38902 PIB2YGL023C 1908 nt9.78□□□□□ -0.84
RPB11P38902 RTF1YGL244W 1677 nt9.76□□□□□ -0.85
RPB11P38902 YSC84YHR016C 1407 nt9.75□□□□□ -0.85
RPB11P38902 GIS3YLR094C 1509 nt9.74□□□□□ -0.85
Retrieved 100 of 7,029 protein–RNA pairs in 12.9 ms