RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	YNL122C	P53921	115 aa	Predicted RBP	0.77	□□□□□ -2.29
VPS55	YJR044C	YLR042C	Q07990	161 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	YOR072W	Q08486	104 aa		0.77	□□□□□ -2.29
VPS55	YJR044C	BNI1	P41832	1953 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YRF1-3	P0CX14	1859 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YRF1-7	P0CX15	1859 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	TY4B-J	P47024	1803 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	CAT8	P39113	1433 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	KRE5	P22023	1365 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	VAR1	P02381	398 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	HAP2	P06774	265 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	SNF11	P38956	169 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YEA6	P39953	335 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	TDA2	P40045	126 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	ICS3	P47034	131 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YMR122C	Q03879	124 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YMR090W	Q04304	227 aa	Known RBP	0.76	□□□□□ -2.29
VPS55	YJR044C	YPL225W	Q08971	146 aa	Known RBP	0.76	□□□□□ -2.29
VPS55	YJR044C	YPL261C	Q08976	102 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	OCA6	Q12454	224 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YOR376W-A	Q3E805	51 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YOS1	Q3E834	85 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	MHF1	Q3E835	90 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	OST5	Q92316	86 aa		0.76	□□□□□ -2.29
VPS55	YJR044C	YLR419W	Q06698	1435 aa	Known RBP	0.75	□□□□□ -2.29
VPS55	YJR044C	ADK1	P07170	222 aa	Known RBP	0.75	□□□□□ -2.29
VPS55	YJR044C	BUD23	P25627	275 aa	Predicted RBP	0.75	□□□□□ -2.29
VPS55	YJR044C	YHL037C	P38733	133 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	POR2	P40478	281 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	YIL102C	P40488	101 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	YFL065C	P43539	102 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	RPL22B	P56628	122 aa	Known RBP	0.75	□□□□□ -2.29
VPS55	YJR044C	MIX14	Q04341	121 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	DAD1	Q12248	94 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	YCL048W-A	Q2V2Q2	79 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	MED11	Q99278	115 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	YRF1-6	P53819	1859 aa		0.75	□□□□□ -2.29
VPS55	YJR044C	LYS2	P07702	1392 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	ROM2	P51862	1356 aa	Known RBP	0.74	□□□□□ -2.29
VPS55	YJR044C	UBC4	P15731	148 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	YCR101C	P25607	182 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	YIR020C	P40575	100 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	YMR007W	Q03675	126 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	YMR103C	Q04436	120 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	COA4	Q05809	96 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	HPA2	Q06592	156 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	COA6	Q3E846	104 aa		0.74	□□□□□ -2.29
VPS55	YJR044C	SLH1	P53327	1967 aa	Known RBP	0.74	□□□□□ -2.29
VPS55	YJR044C	SKI3	P17883	1432 aa	Known RBP	0.73	□□□□□ -2.29
VPS55	YJR044C	RPS22A	P0C0W1	130 aa	Known RBP	0.73	□□□□□ -2.29
VPS55	YJR044C	RPL40A	P0CH08	128 aa	Known RBP	0.73	□□□□□ -2.29
VPS55	YJR044C	RPL40B	P0CH09	128 aa	Known RBP	0.73	□□□□□ -2.29
VPS55	YJR044C	SRX1	P36077	127 aa		0.73	□□□□□ -2.29
VPS55	YJR044C	ZEO1	Q08245	113 aa		0.73	□□□□□ -2.29
VPS55	YJR044C	FIT3	Q08907	204 aa		0.73	□□□□□ -2.29
VPS55	YJR044C	PRM3	Q08931	133 aa		0.73	□□□□□ -2.29
VPS55	YJR044C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.73	□□□□□ -2.29
VPS55	YJR044C	NTE1	Q04958	1679 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YSF3	P0C074	85 aa	Predicted RBP	0.72	□□□□□ -2.29
VPS55	YJR044C	ATG8	P38182	117 aa	RIP-Chip data	0.72	□□□□□ -2.29	not detected
VPS55	YJR044C	SNN1	P48232	102 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	MGR2	Q02889	113 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YMR321C	Q04898	105 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YLR194C	Q05777	254 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YPR203W	Q08994	102 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YLR363W-A	Q3E747	85 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	YGL041C-B	Q3E750	60 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	PCC1	Q3E833	88 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	MYO1	P08964	1928 aa		0.72	□□□□□ -2.29
VPS55	YJR044C	PDR10	P51533	1564 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	RPL22A	P05749	121 aa	Known RBP	0.71	□□□□□ -2.3
VPS55	YJR044C	YCR001W	P25347	104 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	YHL005C	P38752	130 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	YHR130C	P38834	111 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	HUA1	P40325	198 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	YIL163C	P40448	117 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	SEN15	Q04675	128 aa		0.71	□□□□□ -2.3
VPS55	YJR044C	RPA190	P10964	1664 aa	Known RBP	0.71	□□□□□ -2.3
VPS55	YJR044C	BRR2	P32639	2163 aa	Known RBP	0.7	□□□□□ -2.3
VPS55	YJR044C	DNA2	P38859	1522 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	COX23	P38824	151 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	YHR138C	P38841	114 aa	Predicted RBP	0.7	□□□□□ -2.3
VPS55	YJR044C	PAU12	P53343	120 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	RSM19	P53733	91 aa	Predicted RBP	0.7	□□□□□ -2.3
VPS55	YJR044C	YGR240C-A	Q3E786	66 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	KSH1	Q8TGJ3	72 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	MIC10	Q96VH5	97 aa		0.7	□□□□□ -2.3
VPS55	YJR044C	ESC1	Q03661	1658 aa	Known RBP	0.69	□□□□□ -2.3
VPS55	YJR044C	ESP1	Q03018	1630 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	CCW14	O13547	238 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	AQY2	P0CD90	149 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	MRPL31	P14063	131 aa	Predicted RBP	0.69	□□□□□ -2.3
VPS55	YJR044C	VPS55	P47111	140 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	CCW12	Q12127	133 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	YCL001W-B	Q96VH2	84 aa		0.69	□□□□□ -2.3
VPS55	YJR044C	URB1	P34241	1764 aa	Known RBP	0.69	□□□□□ -2.3
VPS55	YJR044C	SEC7	P11075	2009 aa	Known RBP	0.69	□□□□□ -2.3
VPS55	YJR044C	LTE1	P07866	1435 aa		0.68	□□□□□ -2.3
VPS55	YJR044C	YOL013W-A	P0C272	63 aa	Predicted RBP	0.68	□□□□□ -2.3
VPS55	YJR044C	PAU19	P0CE85	124 aa		0.68	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 41.4 ms