RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	ATG8	P38182	117 aa	RIP-Chip data	2.54	□□□□□ -2	not detected
VMA22	YHR060W	YFL065C	P43539	102 aa		2.54	□□□□□ -2
VMA22	YHR060W	YIL014C-A	Q02598	104 aa		2.54	□□□□□ -2
VMA22	YHR060W	COA6	Q3E846	104 aa		2.54	□□□□□ -2
VMA22	YHR060W	YGL014C-A	P0C5N1	53 aa		2.53	□□□□□ -2
VMA22	YHR060W	YJL197C-A	P0C5P0	93 aa		2.53	□□□□□ -2
VMA22	YHR060W	FPR1	P20081	114 aa	Known RBP	2.53	□□□□□ -2
VMA22	YHR060W	MRPL15	P36523	253 aa		2.53	□□□□□ -2
VMA22	YHR060W	YHR130C	P38834	111 aa		2.53	□□□□□ -2
VMA22	YHR060W	CAT8	P39113	1433 aa		2.52	□□□□□ -2.01
VMA22	YHR060W	RPL40A	P0CH08	128 aa	Known RBP	2.52	□□□□□ -2.01
VMA22	YHR060W	RPL40B	P0CH09	128 aa	Known RBP	2.52	□□□□□ -2.01
VMA22	YHR060W	LST8	P41318	303 aa		2.52	□□□□□ -2.01
VMA22	YHR060W	RPL22B	P56628	122 aa	Known RBP	2.52	□□□□□ -2.01
VMA22	YHR060W	IRC21	Q04772	201 aa		2.52	□□□□□ -2.01
VMA22	YHR060W	LYS2	P07702	1392 aa		2.51	□□□□□ -2.01
VMA22	YHR060W	SNN1	P48232	102 aa		2.51	□□□□□ -2.01
VMA22	YHR060W	UBC4	P15731	148 aa		2.5	□□□□□ -2.01
VMA22	YHR060W	YMR122C	Q03879	124 aa		2.5	□□□□□ -2.01
VMA22	YHR060W	YLR194C	Q05777	254 aa		2.5	□□□□□ -2.01
VMA22	YHR060W	PCC1	Q3E833	88 aa		2.5	□□□□□ -2.01
VMA22	YHR060W	REV3	P14284	1504 aa		2.5	□□□□□ -2.01
VMA22	YHR060W	PAU12	P53343	120 aa		2.49	□□□□□ -2.01
VMA22	YHR060W	SEN15	Q04675	128 aa		2.49	□□□□□ -2.01
VMA22	YHR060W	SRX1	P36077	127 aa		2.48	□□□□□ -2.01
VMA22	YHR060W	YPR203W	Q08994	102 aa		2.48	□□□□□ -2.01
VMA22	YHR060W	MIC10	Q96VH5	97 aa		2.48	□□□□□ -2.01
VMA22	YHR060W	FAS1	P07149	2051 aa	Known RBP	2.46	□□□□□ -2.01
VMA22	YHR060W	TY3B-I	Q7LHG5	1498 aa	Known RBP	2.46	□□□□□ -2.02
VMA22	YHR060W	MIX14	Q04341	121 aa		2.46	□□□□□ -2.02
VMA22	YHR060W	COA4	Q05809	96 aa		2.46	□□□□□ -2.02
VMA22	YHR060W	YLR363W-A	Q3E747	85 aa		2.46	□□□□□ -2.02
VMA22	YHR060W	PAU19	P0CE85	124 aa		2.45	□□□□□ -2.02
VMA22	YHR060W	PAU3	P25610	124 aa		2.45	□□□□□ -2.02
VMA22	YHR060W	POR2	P40478	281 aa		2.45	□□□□□ -2.02
VMA22	YHR060W	FAB1	P34756	2278 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	SRB6	P32570	121 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	PAU2	P32612	120 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	YJL009W	P47078	108 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	PRM3	Q08931	133 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	KSH1	Q8TGJ3	72 aa		2.44	□□□□□ -2.02
VMA22	YHR060W	SSN2	P38931	1420 aa		2.43	□□□□□ -2.02
VMA22	YHR060W	RPL22A	P05749	121 aa	Known RBP	2.43	□□□□□ -2.02
VMA22	YHR060W	COX23	P38824	151 aa		2.43	□□□□□ -2.02
VMA22	YHR060W	YIR020C	P40575	100 aa		2.43	□□□□□ -2.02
VMA22	YHR060W	TY1B-H	O13535	1793 aa		2.42	□□□□□ -2.02
VMA22	YHR060W	YHL037C	P38733	133 aa		2.42	□□□□□ -2.02
VMA22	YHR060W	FIT3	Q08907	204 aa		2.42	□□□□□ -2.02
VMA22	YHR060W	YSF3	P0C074	85 aa	Predicted RBP	2.41	□□□□□ -2.02
VMA22	YHR060W	YHR212W-A	P0CX91	67 aa		2.41	□□□□□ -2.02
VMA22	YHR060W	PAU24	P38155	120 aa		2.41	□□□□□ -2.02
VMA22	YHR060W	YIL163C	P40448	117 aa		2.41	□□□□□ -2.02
VMA22	YHR060W	YOR072W	Q08486	104 aa		2.41	□□□□□ -2.02
VMA22	YHR060W	YCR075W-A	Q3E830	75 aa		2.41	□□□□□ -2.02
VMA22	YHR060W	YHR138C	P38841	114 aa	Predicted RBP	2.4	□□□□□ -2.03
VMA22	YHR060W	CYB5	P40312	120 aa		2.4	□□□□□ -2.03
VMA22	YHR060W	MSL1	P40567	111 aa	Predicted RBP	2.39	□□□□□ -2.03
VMA22	YHR060W	RSM19	P53733	91 aa	Predicted RBP	2.39	□□□□□ -2.03
VMA22	YHR060W	YNL122C	P53921	115 aa	Predicted RBP	2.39	□□□□□ -2.03
VMA22	YHR060W	NHP10	Q03435	203 aa		2.39	□□□□□ -2.03
VMA22	YHR060W	YMR321C	Q04898	105 aa		2.39	□□□□□ -2.03
VMA22	YHR060W	YCL048W-A	Q2V2Q2	79 aa		2.39	□□□□□ -2.03
VMA22	YHR060W	PAU16	P35994	123 aa		2.38	□□□□□ -2.03
VMA22	YHR060W	AIM4	P38305	123 aa	Predicted RBP	2.38	□□□□□ -2.03
VMA22	YHR060W	PAU15	P40585	124 aa		2.38	□□□□□ -2.03
VMA22	YHR060W	YLR419W	Q06698	1435 aa	Known RBP	2.38	□□□□□ -2.03
VMA22	YHR060W	YGL041C-B	Q3E750	60 aa		2.38	□□□□□ -2.03
VMA22	YHR060W	RSF2	P46974	1380 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	HMRA2	P0CY13	119 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	YAR064W	P39563	99 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	EMC5	P40540	141 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	ICS3	P47034	131 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	YLR285C-A	Q3E771	56 aa		2.37	□□□□□ -2.03
VMA22	YHR060W	YHL005C	P38752	130 aa		2.36	□□□□□ -2.03
VMA22	YHR060W	YDR029W	Q12111	104 aa		2.36	□□□□□ -2.03
VMA22	YHR060W	ENV10	Q99382	181 aa		2.36	□□□□□ -2.03
VMA22	YHR060W	LSM6	Q06406	86 aa	Known RBP	2.35	□□□□□ -2.03
VMA22	YHR060W	SUS1	Q6WNK7	96 aa		2.35	□□□□□ -2.03
VMA22	YHR060W	DNA2	P38859	1522 aa		2.35	□□□□□ -2.03
VMA22	YHR060W	YPK9	Q12697	1472 aa		2.34	□□□□□ -2.03
VMA22	YHR060W	AQY2	P0CD90	149 aa		2.34	□□□□□ -2.03
VMA22	YHR060W	YIL102C	P40488	101 aa		2.34	□□□□□ -2.03
VMA22	YHR060W	ROM2	P51862	1356 aa	Known RBP	2.34	□□□□□ -2.04
VMA22	YHR060W	SNU13	P39990	126 aa	Known RBP	2.33	□□□□□ -2.04
VMA22	YHR060W	MIC27	P50945	234 aa		2.33	□□□□□ -2.04
VMA22	YHR060W	YMR007W	Q03675	126 aa		2.33	□□□□□ -2.04
VMA22	YHR060W	RPS22A	P0C0W1	130 aa	Known RBP	2.32	□□□□□ -2.04
VMA22	YHR060W	HMRA1	P0CY11	126 aa		2.32	□□□□□ -2.04
VMA22	YHR060W	YBR013C	P38215	129 aa		2.32	□□□□□ -2.04
VMA22	YHR060W	VPS55	P47111	140 aa		2.32	□□□□□ -2.04
VMA22	YHR060W	YOL118C	Q08259	102 aa		2.32	□□□□□ -2.04
VMA22	YHR060W	CCW12	Q12127	133 aa		2.32	□□□□□ -2.04
VMA22	YHR060W	RPS22B	Q3E7Y3	130 aa	Known RBP	2.32	□□□□□ -2.04
VMA22	YHR060W	YCR001W	P25347	104 aa		2.31	□□□□□ -2.04
VMA22	YHR060W	RIF1	P29539	1916 aa		2.3	□□□□□ -2.04
VMA22	YHR060W	YGR240C-A	Q3E786	66 aa		2.3	□□□□□ -2.04
VMA22	YHR060W	LTE1	P07866	1435 aa		2.3	□□□□□ -2.04
VMA22	YHR060W	ECM12	O13529	151 aa		2.29	□□□□□ -2.04
VMA22	YHR060W	MRPL31	P14063	131 aa	Predicted RBP	2.29	□□□□□ -2.04
VMA22	YHR060W	YGL194C-A	Q2V2P6	80 aa		2.29	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 48.5 ms