RNA–Protein interactions for RNA: YER029C

SMB1, Transcript of Core Sm protein Sm B, yeast

Gene SMB1, Length 591 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMB1	YER029C	RGI1	P40043	161 aa	Predicted RBP	0.43	□□□□□ -2.34
SMB1	YER029C	GAT4	P40569	121 aa		0.43	□□□□□ -2.34
SMB1	YER029C	RPS12	P48589	143 aa	Known RBP	0.43	□□□□□ -2.34
SMB1	YER029C	BRP1	P53194	125 aa		0.43	□□□□□ -2.34
SMB1	YER029C	HPA2	Q06592	156 aa		0.43	□□□□□ -2.34
SMB1	YER029C	FYV7	Q12247	151 aa		0.43	□□□□□ -2.34
SMB1	YER029C	YOR097C	Q12274	175 aa	Predicted RBP	0.43	□□□□□ -2.34
SMB1	YER029C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.43	□□□□□ -2.34
SMB1	YER029C	PDR11	P40550	1411 aa		0.43	□□□□□ -2.34
SMB1	YER029C	URB1	P34241	1764 aa	Known RBP	0.42	□□□□□ -2.34
SMB1	YER029C	YRF1-3	P0CX14	1859 aa		0.42	□□□□□ -2.34
SMB1	YER029C	YRF1-7	P0CX15	1859 aa		0.42	□□□□□ -2.34
SMB1	YER029C	RPL36B	O14455	100 aa	Known RBP	0.42	□□□□□ -2.34
SMB1	YER029C	RPL36A	P05745	100 aa	Predicted RBP	0.42	□□□□□ -2.34
SMB1	YER029C	YHR213W	P0CI67	198 aa		0.42	□□□□□ -2.34
SMB1	YER029C	GSP1	P32835	219 aa	Known RBP	0.42	□□□□□ -2.34
SMB1	YER029C	AIM4	P38305	123 aa	Predicted RBP	0.42	□□□□□ -2.34
SMB1	YER029C	YHR130C	P38834	111 aa		0.42	□□□□□ -2.34
SMB1	YER029C	PAM16	P42949	149 aa		0.42	□□□□□ -2.34
SMB1	YER029C	YMR122C	Q03879	124 aa		0.42	□□□□□ -2.34
SMB1	YER029C	YLR194C	Q05777	254 aa		0.42	□□□□□ -2.34
SMB1	YER029C	PRM3	Q08931	133 aa		0.42	□□□□□ -2.34
SMB1	YER029C	YPL225W	Q08971	146 aa	Known RBP	0.42	□□□□□ -2.34
SMB1	YER029C	YPL261C	Q08976	102 aa		0.42	□□□□□ -2.34
SMB1	YER029C	DAD1	Q12248	94 aa		0.42	□□□□□ -2.34
SMB1	YER029C	OCA6	Q12454	224 aa		0.42	□□□□□ -2.34
SMB1	YER029C	PCC1	Q3E833	88 aa		0.42	□□□□□ -2.34
SMB1	YER029C	REV3	P14284	1504 aa		0.42	□□□□□ -2.34
SMB1	YER029C	YPK9	Q12697	1472 aa		0.41	□□□□□ -2.34
SMB1	YER029C	TSC11	P40061	1430 aa		0.41	□□□□□ -2.34
SMB1	YER029C	RPA190	P10964	1664 aa	Known RBP	0.41	□□□□□ -2.34
SMB1	YER029C	RTC6	O14464	93 aa		0.41	□□□□□ -2.34
SMB1	YER029C	PFY1	P07274	126 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YCR099C	P25657	155 aa		0.41	□□□□□ -2.34
SMB1	YER029C	SRX1	P36077	127 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YBR013C	P38215	129 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YER187W	P40102	141 aa		0.41	□□□□□ -2.34
SMB1	YER029C	LST8	P41318	303 aa		0.41	□□□□□ -2.34
SMB1	YER029C	VMA21	P41806	77 aa		0.41	□□□□□ -2.34
SMB1	YER029C	GNA1	P43577	159 aa	Predicted RBP	0.41	□□□□□ -2.34
SMB1	YER029C	YFR035C	P43608	114 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YJL009W	P47078	108 aa		0.41	□□□□□ -2.34
SMB1	YER029C	PAU12	P53343	120 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YIL014C-A	Q02598	104 aa		0.41	□□□□□ -2.34
SMB1	YER029C	IRC21	Q04772	201 aa		0.41	□□□□□ -2.34
SMB1	YER029C	YLR365W	Q7LIF2	110 aa		0.41	□□□□□ -2.34
SMB1	YER029C	OST5	Q92316	86 aa		0.41	□□□□□ -2.34
SMB1	YER029C	ENV10	Q99382	181 aa		0.41	□□□□□ -2.34
SMB1	YER029C	BNI1	P41832	1953 aa		0.41	□□□□□ -2.34
SMB1	YER029C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.41	□□□□□ -2.34
SMB1	YER029C	TOP2	P06786	1428 aa	Known RBP	0.4	□□□□□ -2.34
SMB1	YER029C	YRF1-6	P53819	1859 aa		0.4	□□□□□ -2.35
SMB1	YER029C	RPL22A	P05749	121 aa	Known RBP	0.4	□□□□□ -2.35
SMB1	YER029C	HMRA2	P0CY13	119 aa		0.4	□□□□□ -2.35
SMB1	YER029C	BUD23	P25627	275 aa	Predicted RBP	0.4	□□□□□ -2.35
SMB1	YER029C	EMP24	P32803	203 aa	Known RBP	0.4	□□□□□ -2.35
SMB1	YER029C	PAU24	P38155	120 aa		0.4	□□□□□ -2.35
SMB1	YER029C	COX23	P38824	151 aa		0.4	□□□□□ -2.35
SMB1	YER029C	YEA6	P39953	335 aa		0.4	□□□□□ -2.35
SMB1	YER029C	YMR141C	P40211	102 aa		0.4	□□□□□ -2.35
SMB1	YER029C	CYB5	P40312	120 aa		0.4	□□□□□ -2.35
SMB1	YER029C	YIL163C	P40448	117 aa		0.4	□□□□□ -2.35
SMB1	YER029C	GTT1	P40582	234 aa		0.4	□□□□□ -2.35
SMB1	YER029C	MVB12	P42939	101 aa		0.4	□□□□□ -2.35
SMB1	YER029C	VPS55	P47111	140 aa		0.4	□□□□□ -2.35
SMB1	YER029C	SNN1	P48232	102 aa		0.4	□□□□□ -2.35
SMB1	YER029C	MIC27	P50945	234 aa		0.4	□□□□□ -2.35
SMB1	YER029C	RPL22B	P56628	122 aa	Known RBP	0.4	□□□□□ -2.35
SMB1	YER029C	YMR090W	Q04304	227 aa	Known RBP	0.4	□□□□□ -2.35
SMB1	YER029C	COA4	Q05809	96 aa		0.4	□□□□□ -2.35
SMB1	YER029C	ZEO1	Q08245	113 aa		0.4	□□□□□ -2.35
SMB1	YER029C	YGL041C-B	Q3E750	60 aa		0.4	□□□□□ -2.35
SMB1	YER029C	YGR240C-A	Q3E786	66 aa		0.4	□□□□□ -2.35
SMB1	YER029C	COA6	Q3E846	104 aa		0.4	□□□□□ -2.35
SMB1	YER029C	KRE5	P22023	1365 aa		0.4	□□□□□ -2.35
SMB1	YER029C	ESC1	Q03661	1658 aa	Known RBP	0.4	□□□□□ -2.35
SMB1	YER029C	NTE1	Q04958	1679 aa		0.4	□□□□□ -2.35
SMB1	YER029C	SKI3	P17883	1432 aa	Known RBP	0.39	□□□□□ -2.35
SMB1	YER029C	CAT8	P39113	1433 aa		0.39	□□□□□ -2.35
SMB1	YER029C	GEA1	P47102	1408 aa	Predicted RBP	0.39	□□□□□ -2.35
SMB1	YER029C	YLR419W	Q06698	1435 aa	Known RBP	0.39	□□□□□ -2.35
SMB1	YER029C	SWR1	Q05471	1514 aa		0.39	□□□□□ -2.35
SMB1	YER029C	YSF3	P0C074	85 aa	Predicted RBP	0.39	□□□□□ -2.35
SMB1	YER029C	YJL197C-A	P0C5P0	93 aa		0.39	□□□□□ -2.35
SMB1	YER029C	PAU19	P0CE85	124 aa		0.39	□□□□□ -2.35
SMB1	YER029C	YCR101C	P25607	182 aa		0.39	□□□□□ -2.35
SMB1	YER029C	PAU3	P25610	124 aa		0.39	□□□□□ -2.35
SMB1	YER029C	SRB6	P32570	121 aa		0.39	□□□□□ -2.35
SMB1	YER029C	PAU2	P32612	120 aa		0.39	□□□□□ -2.35
SMB1	YER029C	YHR138C	P38841	114 aa	Predicted RBP	0.39	□□□□□ -2.35
SMB1	YER029C	POR2	P40478	281 aa		0.39	□□□□□ -2.35
SMB1	YER029C	PAU15	P40585	124 aa		0.39	□□□□□ -2.35
SMB1	YER029C	HUR1	P45820	110 aa		0.39	□□□□□ -2.35
SMB1	YER029C	YMR103C	Q04436	120 aa		0.39	□□□□□ -2.35
SMB1	YER029C	SWC7	Q06707	132 aa		0.39	□□□□□ -2.35
SMB1	YER029C	YLR363W-A	Q3E747	85 aa		0.39	□□□□□ -2.35
SMB1	YER029C	HUG1	Q6Q5K6	68 aa		0.39	□□□□□ -2.35
SMB1	YER029C	LYS2	P07702	1392 aa		0.39	□□□□□ -2.35
SMB1	YER029C	GEA2	P39993	1459 aa	Known RBP	0.39	□□□□□ -2.35
SMB1	YER029C	MYO1	P08964	1928 aa		0.38	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 61.5 ms