RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	HMRA1	P0CY11	126 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	RRT1	P38192	103 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	HUA1	P40325	198 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	YIR020C	P40575	100 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	TOM7	P53507	60 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	YMR166C	Q03829	368 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	YIL134C-A	Q45U18	67 aa		2.89	□□□□□ -1.95
UBX5	YDR330W	YHR213W	P0CI67	198 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	CUP2	P15315	225 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	PHO85	P17157	305 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	SCM4	P32564	187 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	PAM17	P36147	197 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	MIC12	P38341	106 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	RPB11	P38902	120 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	SWT21	P53873	357 aa	Predicted RBP	2.88	□□□□□ -1.95
UBX5	YDR330W	RPS22B	Q3E7Y3	130 aa	Known RBP	2.88	□□□□□ -1.95
UBX5	YDR330W	COX10	P21592	462 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	RPB9	P27999	122 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	FZF1	P32805	299 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	MRPL38	P35996	138 aa	Predicted RBP	2.88	□□□□□ -1.95
UBX5	YDR330W	MRPL11	P36521	249 aa	Predicted RBP	2.88	□□□□□ -1.95
UBX5	YDR330W	YHL044W	P38727	235 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	GLE2	P40066	365 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	IMP2	P46972	177 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	GIM5	Q04493	163 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	CSI2	Q08054	341 aa		2.88	□□□□□ -1.95
UBX5	YDR330W	GCN1	P33892	2672 aa	Known RBP	2.87	□□□□□ -1.95
UBX5	YDR330W	YBR121C-A	P0C5L4	52 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	FUN14	P18411	198 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	MRPL44	P19956	98 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	VMA11	P32842	164 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	YJL027C	P47063	138 aa	Predicted RBP	2.87	□□□□□ -1.95
UBX5	YDR330W	SPG4	Q04438	115 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	IRC23	Q08416	157 aa		2.87	□□□□□ -1.95
UBX5	YDR330W	HTB2	P02294	131 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	SEC4	P07560	215 aa	Known RBP	2.86	□□□□□ -1.95
UBX5	YDR330W	MRPL31	P14063	131 aa	Predicted RBP	2.86	□□□□□ -1.95
UBX5	YDR330W	YKL102C	P34249	101 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	AME1	P38313	324 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	YER134C	P40081	178 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	YFR045W	P43617	309 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	RPA43	P46669	326 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	TDA4	P47153	279 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	DAD4	P69851	72 aa		2.86	□□□□□ -1.95
UBX5	YDR330W	CPT1	P17898	393 aa		2.85	□□□□□ -1.95
UBX5	YDR330W	ERG28	P40030	148 aa		2.85	□□□□□ -1.95
UBX5	YDR330W	YMR141C	P40211	102 aa		2.85	□□□□□ -1.95
UBX5	YDR330W	YGR219W	P53307	113 aa		2.85	□□□□□ -1.95
UBX5	YDR330W	SMD1	Q02260	146 aa	Predicted RBP	2.85	□□□□□ -1.95
UBX5	YDR330W	PAU16	P35994	123 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	MID2	P36027	376 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	TEM1	P38987	245 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	PAU7	P39545	55 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	SNU13	P39990	126 aa	Known RBP	2.84	□□□□□ -1.95
UBX5	YDR330W	YJL028W	P47062	111 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	BRP1	P53194	125 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	UBC7	Q02159	165 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	FSF1	Q12029	327 aa	Known RBP	2.84	□□□□□ -1.95
UBX5	YDR330W	FYV7	Q12247	151 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	DAD1	Q12248	94 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	YKL183C-A	Q3E765	70 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	Q0297	Q9ZZV8	51 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	TEL1	P38110	2787 aa		2.84	□□□□□ -1.95
UBX5	YDR330W	ATP5	P09457	212 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	GSP1	P32835	219 aa	Known RBP	2.83	□□□□□ -1.96
UBX5	YDR330W	GSP2	P32836	220 aa	Known RBP	2.83	□□□□□ -1.96
UBX5	YDR330W	POR2	P40478	281 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	MIC26	P50087	233 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	YOL160W	Q08321	113 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	YDL085C-A	Q3E7B7	68 aa	Known RBP	2.83	□□□□□ -1.96
UBX5	YDR330W	YLR342W-A	Q3E810	57 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	YNL200C	P40165	246 aa	Known RBP	2.83	□□□□□ -1.96
UBX5	YDR330W	YNL194C	P40169	301 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	THG1	P53215	237 aa	Known RBP	2.83	□□□□□ -1.96
UBX5	YDR330W	CAB4	P53332	305 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	CNL1	Q06333	122 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	WIP1	Q2V2P8	89 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	YBL008W-A	Q3E821	79 aa		2.83	□□□□□ -1.96
UBX5	YDR330W	BPH1	P25356	2167 aa		2.82	□□□□□ -1.96
UBX5	YDR330W	RPL28	P02406	149 aa	Known RBP	2.82	□□□□□ -1.96
UBX5	YDR330W	RPL27A	P0C2H6	136 aa	Known RBP	2.82	□□□□□ -1.96
UBX5	YDR330W	RPL43A	P0CX25	92 aa	Known RBP	2.82	□□□□□ -1.96
UBX5	YDR330W	RPL43B	P0CX26	92 aa		2.82	□□□□□ -1.96
UBX5	YDR330W	YBL081W	P38180	368 aa	Known RBP	2.82	□□□□□ -1.96
UBX5	YDR330W	SEC72	P39742	193 aa	Known RBP	2.82	□□□□□ -1.96
UBX5	YDR330W	SAE3	P89114	91 aa		2.82	□□□□□ -1.96
UBX5	YDR330W	UPS3	Q04006	179 aa		2.82	□□□□□ -1.96
UBX5	YDR330W	NAT5	Q08689	176 aa		2.82	□□□□□ -1.96
UBX5	YDR330W	SNF11	P38956	169 aa		2.81	□□□□□ -1.96
UBX5	YDR330W	SPI1	P40092	148 aa		2.81	□□□□□ -1.96
UBX5	YDR330W	YGR025W	P53216	100 aa		2.81	□□□□□ -1.96
UBX5	YDR330W	PKR1	Q03880	122 aa	Known RBP	2.81	□□□□□ -1.96
UBX5	YDR330W	YDL157C	Q12082	118 aa		2.81	□□□□□ -1.96
UBX5	YDR330W	TIM22	Q12328	207 aa		2.81	□□□□□ -1.96
UBX5	YDR330W	SEC11	P15367	167 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	MIG1	P27705	504 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	YKR032W	P36127	104 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	YHR140W	P38842	239 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	VPS55	P47111	140 aa		2.8	□□□□□ -1.96
UBX5	YDR330W	POP3	P53833	195 aa	Predicted RBP	2.8	□□□□□ -1.96

Retrieved 100 of 5,963 RNA–protein pairs in 25.8 ms