RNA–Protein interactions for RNA: YKL057C

NUP120, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP120, Length 3,114 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP120	YKL057C	SIN3	P22579	1536 aa		0.77	□□□□□ -2.29
NUP120	YKL057C	ASF2	P32448	525 aa	Predicted RBP	0.77	□□□□□ -2.29
NUP120	YKL057C	HTD2	P38790	280 aa	Known RBP	0.77	□□□□□ -2.29
NUP120	YKL057C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	0.76	□□□□□ -2.29	not detected
NUP120	YKL057C	HHO1	P53551	258 aa		0.76	□□□□□ -2.29
NUP120	YKL057C	PGA1	P53896	198 aa		0.76	□□□□□ -2.29
NUP120	YKL057C	YPR153W	Q06537	140 aa		0.76	□□□□□ -2.29
NUP120	YKL057C	YKR041W	P36134	250 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	YLR053C	Q12026	108 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	RAD51	P25454	400 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	SKI6	P46948	246 aa	Predicted RBP	0.75	□□□□□ -2.29
NUP120	YKL057C	SPG1	P50088	95 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	SWR1	Q05471	1514 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	SHB17	P36136	271 aa	Known RBP	0.75	□□□□□ -2.29
NUP120	YKL057C	ECM31	P38122	312 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	RRT1	P38192	103 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	DER1	P38307	211 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	MPC3	P53311	146 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	DML1	Q03652	475 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	YCL012C	Q8J0M4	134 aa		0.75	□□□□□ -2.29
NUP120	YKL057C	DAS2	Q12084	232 aa		0.74	□□□□□ -2.29
NUP120	YKL057C	YGR269W	P40326	108 aa		0.74	□□□□□ -2.29
NUP120	YKL057C	ERG10	P41338	398 aa	Known RBP	0.74	□□□□□ -2.29
NUP120	YKL057C	LSM3	P57743	89 aa	Known RBP	0.74	□□□□□ -2.29
NUP120	YKL057C	SYM1	Q06563	197 aa		0.74	□□□□□ -2.29
NUP120	YKL057C	CYR1	P08678	2026 aa	Known RBP	0.74	□□□□□ -2.29
NUP120	YKL057C	RPB7	P34087	171 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	YNR064C	P53750	290 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	FMN1	Q03778	218 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	YGL101W	P53144	215 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	ELP6	Q04868	273 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	UPS1	Q05776	175 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	RAF1	Q06891	181 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	PET20	Q99373	253 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	DNF1	P32660	1571 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	FIG1	P38224	298 aa		0.73	□□□□□ -2.29
NUP120	YKL057C	NMA1	Q06178	401 aa	Known RBP	0.72	□□□□□ -2.29
NUP120	YKL057C	VAR1	P02381	398 aa		0.72	□□□□□ -2.29
NUP120	YKL057C	RPS25B	P0C0T4	108 aa	Known RBP	0.72	□□□□□ -2.29
NUP120	YKL057C	IDP1	P21954	428 aa	Known RBP	0.72	□□□□□ -2.29
NUP120	YKL057C	CCS1	P40202	249 aa	Known RBP	0.72	□□□□□ -2.29
NUP120	YKL057C	THI74	Q04083	370 aa		0.72	□□□□□ -2.29
NUP120	YKL057C	RPS25A	Q3E792	108 aa	Predicted RBP	0.72	□□□□□ -2.29
NUP120	YKL057C	YEL014C	P39999	101 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	YRF1-3	P0CX14	1859 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	YRF1-7	P0CX15	1859 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	UBC8	P28263	218 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	ATP5	P09457	212 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	YBL010C	P32788	280 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	YEL028W	P39989	153 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	MPC1	P53157	130 aa	Known RBP	0.71	□□□□□ -2.3
NUP120	YKL057C	SED1	Q01589	338 aa		0.71	□□□□□ -2.3
NUP120	YKL057C	HAP2	P06774	265 aa		0.7	□□□□□ -2.3
NUP120	YKL057C	MDS3	P53094	1487 aa		0.7	□□□□□ -2.3
NUP120	YKL057C	RPL30	P14120	105 aa	Known RBP	0.7	□□□□□ -2.3
NUP120	YKL057C	ANB1	P19211	157 aa		0.7	□□□□□ -2.3
NUP120	YKL057C	AME1	P38313	324 aa		0.7	□□□□□ -2.3
NUP120	YKL057C	UBC12	P52491	188 aa		0.7	□□□□□ -2.3
NUP120	YKL057C	SPS2	P08459	502 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	SUI1	P32911	108 aa	Known RBP	0.69	□□□□□ -2.3
NUP120	YKL057C	CCC1	P47818	322 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	EST3	Q03096	181 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	IRC21	Q04772	201 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	HSP150	P32478	413 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	NSE4	P43124	402 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	YEL073C	P39974	107 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	HPA3	P39979	161 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	SOL1	P50278	321 aa		0.69	□□□□□ -2.3
NUP120	YKL057C	NQM1	P53228	333 aa	Predicted RBP	0.69	□□□□□ -2.3
NUP120	YKL057C	APS3	P47064	194 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	TTI2	P47168	421 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	NAT3	Q06504	195 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	PET54	P10834	293 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	UPS2	P35200	230 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	FLX1	P40464	311 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	AVO2	Q04749	426 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	YPD1	Q07688	167 aa		0.68	□□□□□ -2.3
NUP120	YKL057C	KOG1	P38873	1557 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	PFY1	P07274	126 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	ATP20	Q12233	115 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	DDP1	Q99321	188 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	RPL35A	P0CX84	120 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	RPL35B	P0CX85	120 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	SRP21	P32342	167 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	MRPL15	P36523	253 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	YHR140W	P38842	239 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	GPI2	P46961	280 aa		0.67	□□□□□ -2.3
NUP120	YKL057C	MYO2	P19524	1574 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	RME1	P32338	300 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	YMR315W	Q04869	349 aa	Known RBP	0.67	□□□□□ -2.3
NUP120	YKL057C	NTE1	Q04958	1679 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	RCF2	P53721	224 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	YPR202W	Q08993	238 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	KIN28	P06242	306 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	DCV1	P43595	202 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	AIM36	Q03798	255 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	COA3	Q3E7B2	85 aa		0.66	□□□□□ -2.3
NUP120	YKL057C	REV3	P14284	1504 aa		0.65	□□□□□ -2.3
NUP120	YKL057C	NHP6A	P11632	93 aa	Known RBP	0.65	□□□□□ -2.31
NUP120	YKL057C	RNH202	Q05635	350 aa		0.65	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 131.1 ms