RNA–Protein interactions for RNA: YBR221C

PDB1, Transcript of E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, yeast

Gene PDB1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDB1	YBR221C	HUT1	Q12520	339 aa		4.61	□□□□□ -1.67
PDB1	YBR221C	TDA8	Q6B2U8	126 aa		4.61	□□□□□ -1.67
PDB1	YBR221C	ATP5	P09457	212 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	RPL43A	P0CX25	92 aa	Known RBP	4.6	□□□□□ -1.67
PDB1	YBR221C	RPL43B	P0CX26	92 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	LDB16	P25587	256 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	IMP1	P28627	190 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	LDS1	P31379	325 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	YKR070W	P36151	352 aa	Known RBP	4.6	□□□□□ -1.67
PDB1	YBR221C	SMP1	P38128	452 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	YBR090C	P38253	122 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	SNM1	P40993	198 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	NSE4	P43124	402 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	TDA4	P47153	279 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	EMC4	P53073	190 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	FMP48	P53233	369 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	ADD37	Q03233	198 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	ATG10	Q07879	167 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
PDB1	YBR221C	SCP1	Q08873	200 aa		4.6	□□□□□ -1.67
PDB1	YBR221C	HHF1	P02309	103 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	RPS13	P05756	151 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	HYP2	P23301	157 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	PEX4	P29340	183 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	YBL081W	P38180	368 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	YJL213W	P40896	331 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	SKI6	P46948	246 aa	Predicted RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	DIE2	P50076	525 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	YHC1	Q05900	231 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	YLR179C	Q06252	201 aa	Known RBP	4.59	□□□□□ -1.67
PDB1	YBR221C	YLR042C	Q07990	161 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	YPL162C	Q12042	273 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	GTT2	Q12390	233 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	HTL1	Q9URQ5	78 aa		4.59	□□□□□ -1.67
PDB1	YBR221C	RPS8A	P0CX39	200 aa	Known RBP	4.58	□□□□□ -1.68
PDB1	YBR221C	RPS8B	P0CX40	200 aa	Known RBP	4.58	□□□□□ -1.68
PDB1	YBR221C	YCR025C	P25352	136 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	RPB11	P38902	120 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	GON7	P46984	123 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	GRH1	Q04410	372 aa	Known RBP	4.58	□□□□□ -1.68
PDB1	YBR221C	TVP18	Q04767	167 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	SCW10	Q04951	389 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	FMP42	Q04991	504 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	YLR112W	Q12130	139 aa		4.58	□□□□□ -1.68
PDB1	YBR221C	REP2	P03872	296 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	MRS3	P10566	314 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	SPT14	P32363	452 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	RPL14A	P36105	138 aa	Known RBP	4.57	□□□□□ -1.68
PDB1	YBR221C	MIX23	P38162	196 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	RPL14B	P38754	138 aa	Known RBP	4.57	□□□□□ -1.68
PDB1	YBR221C	STB1	P42845	420 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	SNO3	P43544	222 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	ELC1	Q03071	99 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	GAS3	Q03655	524 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	LPP1	Q04396	274 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	IZH2	Q12442	317 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	YLR111W	Q12528	110 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	YCR075W-A	Q3E830	75 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	YFR032C-B	Q8TGU2	87 aa		4.57	□□□□□ -1.68
PDB1	YBR221C	PHO89	P38361	574 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	NSG1	P38837	291 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	YGL193C	P53097	103 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	YGR015C	P53208	328 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	SWT21	P53873	357 aa	Predicted RBP	4.56	□□□□□ -1.68
PDB1	YBR221C	BUD25	P85052	153 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	YDL211C	Q12121	372 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	YDR215C	Q12240	137 aa		4.56	□□□□□ -1.68
PDB1	YBR221C	YCR022C	P25620	114 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	ERG2	P32352	222 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	IRC22	P40006	225 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	YNR062C	P53748	327 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	UPS1	Q05776	175 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	YGL194C-A	Q2V2P6	80 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	YOR020W-A	Q3E824	90 aa		4.55	□□□□□ -1.68
PDB1	YBR221C	UBC5	P15732	148 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	AHT1	P29589	182 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.54	□□□□□ -1.68	not detected
PDB1	YBR221C	UTP30	P36144	274 aa	Known RBP	4.54	□□□□□ -1.68
PDB1	YBR221C	SKG1	P36169	355 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	ECM31	P38122	312 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	SNU13	P39990	126 aa	Known RBP	4.54	□□□□□ -1.68
PDB1	YBR221C	YIL012W	P40551	113 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	GNA1	P43577	159 aa	Predicted RBP	4.54	□□□□□ -1.68
PDB1	YBR221C	CLD1	P53264	445 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	VPS68	Q12016	184 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	MCP1	Q12106	302 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	YPR011C	Q12251	326 aa		4.54	□□□□□ -1.68
PDB1	YBR221C	RPB3	P16370	318 aa	Known RBP	4.53	□□□□□ -1.68
PDB1	YBR221C	OMA1	P36163	345 aa		4.53	□□□□□ -1.68
PDB1	YBR221C	YER190C-B	P0CX94	160 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YEL077W-A	P0CX95	160 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YGR296C-B	P0CX96	160 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YPL283W-B	P0CX97	160 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YPR204C-A	P0CX98	160 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	RNQ1	P25367	405 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	ERV15	P38312	142 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YIL054W	P40524	105 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	GTT1	P40582	234 aa		4.52	□□□□□ -1.69
PDB1	YBR221C	YJL218W	P40892	196 aa	Known RBP	4.52	□□□□□ -1.69
PDB1	YBR221C	YGL262W	P53054	175 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 78.2 ms