RNA–Protein interactions for RNA: YLR399C

BDF1, Transcript of Protein involved in transcription initiation, yeast

Gene BDF1, Length 2,061 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BDF1	YLR399C	LPP1	Q04396	274 aa		10.53	□□□□□ -0.72
BDF1	YLR399C	YRA1	Q12159	226 aa	Known RBP	10.53	□□□□□ -0.72
BDF1	YLR399C	ATO3	Q12359	275 aa		10.53	□□□□□ -0.72
BDF1	YLR399C	RPS22B	Q3E7Y3	130 aa	Known RBP	10.53	□□□□□ -0.72
BDF1	YLR399C	TAD3	Q9URQ3	322 aa		10.53	□□□□□ -0.72
BDF1	YLR399C	RPP2B	P02400	110 aa	Known RBP	10.52	□□□□□ -0.73
BDF1	YLR399C	YSF3	P0C074	85 aa	Predicted RBP	10.52	□□□□□ -0.73
BDF1	YLR399C	HSP150	P32478	413 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	SWD3	P38123	315 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	YHL044W	P38727	235 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	YGR050C	P53231	118 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	RHO5	P53879	331 aa	Known RBP	10.52	□□□□□ -0.73
BDF1	YLR399C	IRC13	Q08630	104 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	10.52	□□□□□ -0.73	not detected
BDF1	YLR399C	RKI1	Q12189	258 aa		10.52	□□□□□ -0.73
BDF1	YLR399C	ARF1	P11076	181 aa	Known RBP	10.51	□□□□□ -0.73
BDF1	YLR399C	RPL30	P14120	105 aa	Known RBP	10.51	□□□□□ -0.73
BDF1	YLR399C	COX15	P40086	486 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	CYB5	P40312	120 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	SPG5	P42933	373 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	YFH1	Q07540	174 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	TGS1	Q12052	315 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	YOR192C-C	Q3E736	78 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	MSI1	P13712	422 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	MRP49	P32388	137 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	YGR126W	P53274	230 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	CPD1	P53314	239 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	HRD1	Q08109	551 aa		10.51	□□□□□ -0.73
BDF1	YLR399C	SRP21	P32342	167 aa		10.5	□□□□□ -0.73
BDF1	YLR399C	YIP5	P53108	310 aa		10.5	□□□□□ -0.73
BDF1	YLR399C	LEE1	Q02799	301 aa	Known RBP	10.5	□□□□□ -0.73
BDF1	YLR399C	POC4	Q12245	148 aa	Predicted RBP	10.5	□□□□□ -0.73
BDF1	YLR399C	FPR1	P20081	114 aa	Known RBP	10.49	□□□□□ -0.73
BDF1	YLR399C	YBR220C	P38318	560 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	SWT1	Q12104	458 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YER190C-B	P0CX94	160 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YEL077W-A	P0CX95	160 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YGR296C-B	P0CX96	160 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YPL283W-B	P0CX97	160 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YPR204C-A	P0CX98	160 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	RPS27A	P35997	82 aa	Known RBP	10.49	□□□□□ -0.73
BDF1	YLR399C	YPT53	P36019	220 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	RPS27B	P38711	82 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YNL198C	P40166	100 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	DSK2	P48510	373 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	YLR460C	P54007	376 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	FSF1	Q12029	327 aa	Known RBP	10.49	□□□□□ -0.73
BDF1	YLR399C	YLR363W-A	Q3E747	85 aa		10.49	□□□□□ -0.73
BDF1	YLR399C	EMP70	P32802	667 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	YKR070W	P36151	352 aa	Known RBP	10.48	□□□□□ -0.73
BDF1	YLR399C	TDA4	P47153	279 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	YDL183C	P48569	320 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	HNT2	P49775	206 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	YHR214C-E	Q8TGK0	99 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	VPS13	Q07878	3144 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	ZRT1	P32804	376 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	SHR5	P41912	237 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	GRH1	Q04410	372 aa	Known RBP	10.48	□□□□□ -0.73
BDF1	YLR399C	ATG40	Q99325	256 aa		10.48	□□□□□ -0.73
BDF1	YLR399C	GPP2	P40106	250 aa	Known RBP	10.47	□□□□□ -0.73
BDF1	YLR399C	YNR048W	P53740	393 aa		10.47	□□□□□ -0.73
BDF1	YLR399C	FIT3	Q08907	204 aa		10.47	□□□□□ -0.73
BDF1	YLR399C	POM34	Q12445	299 aa		10.47	□□□□□ -0.73
BDF1	YLR399C	YAL064W-B	O13512	126 aa		10.46	□□□□□ -0.73
BDF1	YLR399C	TNA1	P53322	534 aa		10.46	□□□□□ -0.73
BDF1	YLR399C	YDR344C	Q05510	147 aa		10.46	□□□□□ -0.73
BDF1	YLR399C	DIC1	Q06143	298 aa		10.46	□□□□□ -0.73
BDF1	YLR399C	MRL1	Q06815	381 aa		10.46	□□□□□ -0.73
BDF1	YLR399C	FLO9	P39712	1322 aa		10.46	□□□□□ -0.74
BDF1	YLR399C	FEN2	P25621	512 aa	Known RBP	10.46	□□□□□ -0.74
BDF1	YLR399C	YUH1	P35127	236 aa		10.46	□□□□□ -0.74
BDF1	YLR399C	COQ5	P49017	307 aa		10.46	□□□□□ -0.74
BDF1	YLR399C	YNR061C	P53747	219 aa		10.46	□□□□□ -0.74
BDF1	YLR399C	ARC18	Q05933	178 aa	Known RBP	10.46	□□□□□ -0.74
BDF1	YLR399C	CYC7	P00045	113 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	ATP10	P18496	279 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	CDC39	P25655	2108 aa	Known RBP	10.45	□□□□□ -0.74
BDF1	YLR399C	PSD1	P39006	500 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	YNR071C	P53757	342 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	WSC2	P53832	503 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	POS5	Q06892	414 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	YPT1	P01123	206 aa	Known RBP	10.45	□□□□□ -0.74
BDF1	YLR399C	PRE3	P38624	215 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	PFS1	P38872	237 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	PCL7	P40186	285 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	NIS1	P53939	407 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	ISU2	Q12056	156 aa		10.45	□□□□□ -0.74
BDF1	YLR399C	QRI5	P32344	111 aa		10.44	□□□□□ -0.74
BDF1	YLR399C	YGL118C	P53132	145 aa		10.44	□□□□□ -0.74
BDF1	YLR399C	TDA7	P53882	636 aa	Predicted RBP	10.44	□□□□□ -0.74
BDF1	YLR399C	YOR292C	Q08743	309 aa		10.44	□□□□□ -0.74
BDF1	YLR399C	RPS2	P25443	254 aa	Known RBP	10.43	□□□□□ -0.74
BDF1	YLR399C	FYV4	P38783	130 aa	Predicted RBP	10.43	□□□□□ -0.74
BDF1	YLR399C	YNL200C	P40165	246 aa	Known RBP	10.43	□□□□□ -0.74
BDF1	YLR399C	YJR115W	P47152	169 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	CAB4	P53332	305 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	RDL2	Q08742	149 aa	Known RBP	10.43	□□□□□ -0.74
BDF1	YLR399C	GRE1	Q08969	168 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	YDL180W	Q12301	547 aa		10.43	□□□□□ -0.74
BDF1	YLR399C	PRP46	Q12417	451 aa	Predicted RBP	10.43	□□□□□ -0.74

Retrieved 100 of 5,963 RNA–protein pairs in 36.3 ms