RNA–Protein interactions for RNA: YJL053W

PEP8, Transcript of Vacuolar protein component of the retromer, yeastyeast

Gene PEP8, Length 1,140 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEP8YJL053W ASF2P32448 525 aaPredicted RBP1.17□□□□□ -2.22
PEP8YJL053W TVP23P38962 199 aa1.17□□□□□ -2.22
PEP8YJL053W YER034WP40022 185 aaKnown RBP1.17□□□□□ -2.22
PEP8YJL053W YER134CP40081 178 aa1.17□□□□□ -2.22
PEP8YJL053W SKI6P46948 246 aaPredicted RBP1.17□□□□□ -2.22
PEP8YJL053W RTC4P53850 401 aa1.17□□□□□ -2.22
PEP8YJL053W YLR036CQ07986 203 aa1.17□□□□□ -2.22
PEP8YJL053W RAD28Q12021 506 aa1.17□□□□□ -2.22
PEP8YJL053W YRF1-1P0CX20 1796 aa1.16□□□□□ -2.22
PEP8YJL053W YRF1-5P0CX21 1796 aa1.16□□□□□ -2.22
PEP8YJL053W YRF1-8P0CX22 1796 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-DR3Q99231 1755 aa1.16□□□□□ -2.22
PEP8YJL053W SNF4P12904 322 aa1.16□□□□□ -2.22
PEP8YJL053W CNB1P25296 175 aa1.16□□□□□ -2.22
PEP8YJL053W YER076CP40049 302 aa1.16□□□□□ -2.22
PEP8YJL053W ERG10P41338 398 aaKnown RBP1.16□□□□□ -2.22
PEP8YJL053W TMA22P47089 198 aaPredicted RBP1.16□□□□□ -2.22
PEP8YJL053W NOP19P53317 196 aaPredicted RBP1.16□□□□□ -2.22
PEP8YJL053W YPR174CQ06616 221 aaPredicted RBP1.16□□□□□ -2.22
PEP8YJL053W YHR007C-AQ07074 71 aa1.16□□□□□ -2.22
PEP8YJL053W YLR031WQ07978 186 aa1.16□□□□□ -2.22
PEP8YJL053W VMR1P38735 1592 aa1.16□□□□□ -2.22
PEP8YJL053W DNF3Q12674 1656 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-JR2P47100 1755 aaKnown RBP1.16□□□□□ -2.22
PEP8YJL053W TY1B-ER2Q03619 1755 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-MR1Q04214 1755 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-MR2Q04670 1755 aaKnown RBP1.16□□□□□ -2.22
PEP8YJL053W TY1B-LR1Q12088 1755 aaKnown RBP1.16□□□□□ -2.22
PEP8YJL053W TY1B-NL1Q12112 1755 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-GR1Q12141 1755 aa1.16□□□□□ -2.22
PEP8YJL053W TY1B-BLQ12490 1755 aa1.16□□□□□ -2.22
PEP8YJL053W CYR1P08678 2026 aaKnown RBP1.15□□□□□ -2.22
PEP8YJL053W JIP3O13555 125 aa1.15□□□□□ -2.23
PEP8YJL053W QCR7P00128 127 aa1.15□□□□□ -2.23
PEP8YJL053W POR1P04840 283 aaKnown RBP1.15□□□□□ -2.23
PEP8YJL053W YEA4P40004 342 aa1.15□□□□□ -2.23
PEP8YJL053W RIO2P40160 425 aaKnown RBP1.15□□□□□ -2.23
PEP8YJL053W SER2P42941 309 aa1.15□□□□□ -2.23
PEP8YJL053W MPA43P53583 542 aaPredicted RBP1.15□□□□□ -2.23
PEP8YJL053W RCE1Q03530 315 aa1.15□□□□□ -2.23
PEP8YJL053W YMR295CQ03559 197 aa1.15□□□□□ -2.23
PEP8YJL053W DGA1Q08650 418 aa1.15□□□□□ -2.23
PEP8YJL053W YNL146C-AQ3E7Z1 64 aa1.15□□□□□ -2.23
PEP8YJL053W YCL012CQ8J0M4 134 aa1.15□□□□□ -2.23
PEP8YJL053W IGO2Q9P305 131 aa1.15□□□□□ -2.23
PEP8YJL053W BCK1Q01389 1478 aa1.15□□□□□ -2.23
PEP8YJL053W IML1P47170 1584 aa1.15□□□□□ -2.23
PEP8YJL053W PDR5P33302 1511 aaKnown RBP1.15□□□□□ -2.23
PEP8YJL053W PDR11P40550 1411 aa1.15□□□□□ -2.23
PEP8YJL053W MSB2P32334 1306 aa1.15□□□□□ -2.23
PEP8YJL053W TRA1P38811 3744 aa1.14□□□□□ -2.23
PEP8YJL053W DYN1P36022 4092 aa1.14□□□□□ -2.23
PEP8YJL053W CHC1P22137 1653 aaKnown RBP1.14□□□□□ -2.23
PEP8YJL053W KRE5P22023 1365 aa1.14□□□□□ -2.23
PEP8YJL053W SPO13P23624 291 aa1.14□□□□□ -2.23
PEP8YJL053W CAF4P36130 643 aa1.14□□□□□ -2.23
PEP8YJL053W MTW1P39731 289 aa1.14□□□□□ -2.23
PEP8YJL053W PDS1P40316 373 aaPredicted RBP1.14□□□□□ -2.23
PEP8YJL053W ARP3P47117 449 aaKnown RBP1.14□□□□□ -2.23
PEP8YJL053W UBC7Q02159 165 aa1.14□□□□□ -2.23
PEP8YJL053W USO1P25386 1790 aa1.13□□□□□ -2.23
PEP8YJL053W TY1B-NL2Q99337 1749 aaKnown RBP1.13□□□□□ -2.23
PEP8YJL053W YAR023CD6VPM8 179 aa1.13□□□□□ -2.23
PEP8YJL053W EDC3P39998 551 aaKnown RBP1.13□□□□□ -2.23
PEP8YJL053W ARO8P53090 500 aaKnown RBP1.13□□□□□ -2.23
PEP8YJL053W MPC3P53311 146 aa1.13□□□□□ -2.23
PEP8YJL053W YNL184CP53876 108 aa1.13□□□□□ -2.23
PEP8YJL053W RAD9P14737 1309 aa1.13□□□□□ -2.23
PEP8YJL053W ROM2P51862 1356 aaKnown RBP1.12□□□□□ -2.23
PEP8YJL053W VMA22P38784 181 aa1.12□□□□□ -2.23
PEP8YJL053W YPL073CP40323 161 aa1.12□□□□□ -2.23
PEP8YJL053W YAE1P47118 141 aaPredicted RBP1.12□□□□□ -2.23
PEP8YJL053W YOL024WQ08172 172 aa1.12□□□□□ -2.23
PEP8YJL053W YDL085C-AQ3E7B7 68 aaKnown RBP1.12□□□□□ -2.23
PEP8YJL053W YPR014CQ6B0W2 109 aa1.12□□□□□ -2.23
PEP8YJL053W ADE6P38972 1358 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W RSF2P46974 1380 aa1.11□□□□□ -2.23
PEP8YJL053W FAS1P07149 2051 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W YBT1P32386 1661 aa1.11□□□□□ -2.23
PEP8YJL053W NUP188P52593 1655 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W MDM35O60200 86 aa1.11□□□□□ -2.23
PEP8YJL053W VAR1P02381 398 aa1.11□□□□□ -2.23
PEP8YJL053W RPS24AP0CX31 135 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W RPS24BP0CX32 135 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W FLX1P40464 311 aa1.11□□□□□ -2.23
PEP8YJL053W CUP9P41817 306 aa1.11□□□□□ -2.23
PEP8YJL053W HOP2P53187 214 aa1.11□□□□□ -2.23
PEP8YJL053W CWC27Q02770 301 aa1.11□□□□□ -2.23
PEP8YJL053W YMR099CQ03161 297 aaKnown RBP1.11□□□□□ -2.23
PEP8YJL053W SHH3Q04487 196 aa1.11□□□□□ -2.23
PEP8YJL053W PRP11Q07350 266 aaPredicted RBP1.11□□□□□ -2.23
PEP8YJL053W YOL014WQ08110 124 aa1.11□□□□□ -2.23
PEP8YJL053W IRC23Q08416 157 aa1.11□□□□□ -2.23
PEP8YJL053W YML100W-AQ8TGT0 57 aa1.11□□□□□ -2.23
PEP8YJL053W TDA4P47153 279 aa1.1□□□□□ -2.23
PEP8YJL053W UBC12P52491 188 aa1.1□□□□□ -2.23
PEP8YJL053W YNL247WP53852 767 aaKnown RBP1.1□□□□□ -2.23
PEP8YJL053W YMR315WQ04869 349 aaKnown RBP1.1□□□□□ -2.23
PEP8YJL053W YET3Q07451 203 aa1.1□□□□□ -2.23
PEP8YJL053W CSF1Q12150 2958 aa1.09□□□□□ -2.23
Retrieved 100 of 5,963 RNA–protein pairs in 312 ms