RNA–Protein interactions for RNA: YKR001C

VPS1, Transcript of Dynamin-like GTPase required for vacuolar sorting, yeast

Gene VPS1, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS1	YKR001C	PAI3	P01094	68 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	RPL18A	P0CX49	186 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	RPL18B	P0CX50	186 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	CDC26	P14724	124 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	ANB1	P19211	157 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	HYP2	P23301	157 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	IES6	P32617	166 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	SDH4	P37298	181 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	KTR5	P53966	522 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	THI74	Q04083	370 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	MMT2	Q08970	484 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	YPR071W	Q12346	211 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	RAD52	P06778	471 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	TY1A-H	P0C2I4	478 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	AMD1	P15274	810 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	VMA3	P25515	160 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	TIP1	P27654	210 aa	Predicted RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	ASC1	P38011	319 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	SPC25	P40014	221 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	GLE2	P40066	365 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	PRE5	P40302	234 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	SWM2	P40342	146 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	SAS2	P40963	338 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	FAR3	P46671	204 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	SUT1	P53032	299 aa	Known RBP	4.81	□□□□□ -1.64
VPS1	YKR001C	RCE1	Q03530	315 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	POS5	Q06892	414 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	MCT1	Q12283	360 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	SPO24	Q3E752	67 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	YOS1	Q3E834	85 aa		4.81	□□□□□ -1.64
VPS1	YKR001C	RAS1	P01119	309 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	NOP1	P15646	327 aa	Known RBP	4.8	□□□□□ -1.64
VPS1	YKR001C	SLM5	P25345	492 aa	Known RBP	4.8	□□□□□ -1.64
VPS1	YKR001C	SPS18	P32572	300 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	MRPL11	P36521	249 aa	Predicted RBP	4.8	□□□□□ -1.64
VPS1	YKR001C	AIR1	P40507	360 aa	Known RBP	4.8	□□□□□ -1.64
VPS1	YKR001C	YIL054W	P40524	105 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	MIC26	P50087	233 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	YGL230C	P53074	147 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	APJ1	P53940	528 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	GRX5	Q02784	150 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	NRG1	Q03125	231 aa		4.8	□□□□□ -1.64
VPS1	YKR001C	HRI1	Q05905	244 aa	Known RBP	4.8	□□□□□ -1.64
VPS1	YKR001C	CHO1	P08456	276 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	UBC5	P15732	148 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	PHO85	P17157	305 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	YBR241C	P38142	488 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	VMA21	P41806	77 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	LCB3	P47013	409 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	BRR6	P53062	197 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	THG1	P53215	237 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	FMP41	P53889	259 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	AIM11	P87275	137 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	SWC7	Q06707	132 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	PEX27	Q08580	376 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	NAT5	Q08689	176 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	ORT1	Q12375	292 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	YOR338W	Q99326	363 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	TRA1	P38811	3744 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	YEL009C-A	A0A023PZF2	135 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	RPL28	P02406	149 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	RPL43A	P0CX25	92 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	RPL43B	P0CX26	92 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	RPL12A	P0CX53	165 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	RPL12B	P0CX54	165 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	CKS1	P20486	150 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	NTF2	P33331	125 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	ZRT3	P34240	503 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	SHB17	P36136	271 aa	Known RBP	4.79	□□□□□ -1.64
VPS1	YKR001C	RTC2	P38279	296 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	YEL028W	P39989	153 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	GCV1	P48015	400 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	OST3	P48439	350 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	GPI15	P53961	229 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	CTR3	Q06686	241 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	FRE7	Q12333	620 aa		4.79	□□□□□ -1.64
VPS1	YKR001C	INO4	P13902	151 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	LYS1	P38998	373 aa	RIP-Chip data	4.78	□□□□□ -1.64	not detected
VPS1	YKR001C	VFA1	P40080	203 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	BUD9	P53226	547 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	YNL095C	P53932	642 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	TAZ1	Q06510	381 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	RDL2	Q08742	149 aa	Known RBP	4.78	□□□□□ -1.64
VPS1	YKR001C	VPS68	Q12016	184 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	HUT1	Q12520	339 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	UTP20	P35194	2493 aa	Known RBP	4.78	□□□□□ -1.64
VPS1	YKR001C	AUR1	P36107	401 aa	Predicted RBP	4.78	□□□□□ -1.64
VPS1	YKR001C	POP8	P38208	133 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	XBP1	P40489	647 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	IST3	P40565	148 aa	Predicted RBP	4.78	□□□□□ -1.64
VPS1	YKR001C	ATG18	P43601	500 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	ERV29	P53337	310 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	WSC2	P53832	503 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	HSK3	P69852	69 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	STP3	Q05937	343 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	PIN3	Q06449	215 aa		4.78	□□□□□ -1.64
VPS1	YKR001C	TAH1	P25638	111 aa	Predicted RBP	4.77	□□□□□ -1.65
VPS1	YKR001C	ACB1	P31787	87 aa		4.77	□□□□□ -1.65
VPS1	YKR001C	MLF3	P32047	452 aa		4.77	□□□□□ -1.65
VPS1	YKR001C	UTR5	P32630	166 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 196.1 ms