RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	IDP1	P21954	428 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	MRPL20	P22354	195 aa	Predicted RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	UGX2	P32772	223 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	OAR1	P35731	278 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	FRM2	P37261	193 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	AST2	P39945	430 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	PSA1	P41940	361 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	AIM25	P47140	327 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	ARO8	P53090	500 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	YOR292C	Q08743	309 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	PST2	Q12335	198 aa	Known RBP	3.13	□□□□□ -1.91
NUP85	YJR042W	BBP1	Q12365	385 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	YBL112C	Q3E7Y4	105 aa		3.13	□□□□□ -1.91
NUP85	YJR042W	RAS2	P01120	322 aa	Known RBP	3.12	□□□□□ -1.91
NUP85	YJR042W	STF2	P16965	84 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	CPR4	P25334	318 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	HCM1	P25364	564 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	ARN2	P38724	620 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	PTI1	P39927	425 aa	Predicted RBP	3.12	□□□□□ -1.91
NUP85	YJR042W	LSM4	P40070	187 aa	Known RBP	3.12	□□□□□ -1.91
NUP85	YJR042W	AVT7	P40501	490 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	PHB1	P40961	287 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	FLC3	P53121	802 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	IGO1	P53897	168 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	EMI1	Q04406	187 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	Q0144	Q9ZZW2	109 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	STE7	P06784	515 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	EPT1	P22140	391 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	SEC22	P22214	214 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	TRX3	P25372	127 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	TRR2	P38816	342 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	SEN34	P39707	275 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	SPO73	P40031	143 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	MRH4	P53166	561 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	CWC25	P53854	179 aa	Known RBP	3.12	□□□□□ -1.91
NUP85	YJR042W	YOL131W	Q08270	108 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	GTT2	Q12390	233 aa		3.12	□□□□□ -1.91
NUP85	YJR042W	UBI4	P0CG63	381 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	CDC50	P25656	391 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	ERG24	P32462	438 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	DOG2	P38773	246 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	YMR144W	P40214	342 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	MEP2	P41948	499 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	YNL234W	P53857	426 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	VHS1	Q03785	461 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	PLP1	Q04004	230 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	PAL1	Q05518	499 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	YHR214C-E	Q8TGK0	99 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	LHP1	P33399	275 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	YGP1	P38616	354 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	MPM1	P40364	252 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	LSM7	P53905	115 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	YMR317W	Q04893	1140 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	LIP2	Q06005	328 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	THP3	Q12049	470 aa	Known RBP	3.11	□□□□□ -1.91
NUP85	YJR042W	ATP16	Q12165	160 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	PEX11	Q12462	236 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	MHT1	Q12525	324 aa		3.11	□□□□□ -1.91
NUP85	YJR042W	TIM9	O74700	87 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YER190C-B	P0CX94	160 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YEL077W-A	P0CX95	160 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YGR296C-B	P0CX96	160 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YPL283W-B	P0CX97	160 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YPR204C-A	P0CX98	160 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YCR101C	P25607	182 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	APS1	P35181	156 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	PMU1	P36069	295 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	CSH1	P38287	376 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	BAT1	P38891	393 aa	Known RBP	3.1	□□□□□ -1.91
NUP85	YJR042W	FMP48	P53233	369 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	RPL15B	P54780	204 aa	Predicted RBP	3.1	□□□□□ -1.91
NUP85	YJR042W	PCL9	Q12477	304 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	YAL063C-A	Q3E791	96 aa		3.1	□□□□□ -1.91
NUP85	YJR042W	SLH1	P53327	1967 aa	Known RBP	3.1	□□□□□ -1.91
NUP85	YJR042W	YPR096C	O13587	100 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	RPS18A	P0CX55	146 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	RPS18B	P0CX56	146 aa	Predicted RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	NHP6A	P11632	93 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	HSP30	P25619	332 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	AHC2	P25649	128 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	SPT14	P32363	452 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	YNK1	P36010	153 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	HOT13	P36078	116 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	YJR085C	P47131	105 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	ECL1	P48235	211 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	YGR050C	P53231	118 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	YMD8	Q03697	442 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	RUB1	Q03919	77 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	HRI1	Q05905	244 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	YPR114W	Q06107	315 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	HRD1	Q08109	551 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	RRP40	Q08285	240 aa	Known RBP	3.09	□□□□□ -1.91
NUP85	YJR042W	ERV2	Q12284	196 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	FCY2	P17064	533 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	SEC17	P32602	292 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	SDH3	P33421	198 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	CHS7	P38843	316 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	RMD6	P39975	231 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	BNS1	P50084	137 aa		3.09	□□□□□ -1.91
NUP85	YJR042W	MDM34	P53083	459 aa		3.09	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 48.9 ms