RNA–Protein interactions for RNA: YJL053W

PEP8, Transcript of Vacuolar protein component of the retromer, yeastyeast

Gene PEP8, Length 1,140 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PEP8YJL053W PRP8P33334 2413 aaKnown RBP1.3□□□□□ -2.2
PEP8YJL053W SNT2P53127 1403 aa1.3□□□□□ -2.2
PEP8YJL053W VPS15P22219 1454 aa1.3□□□□□ -2.2
PEP8YJL053W MYO4P32492 1471 aa1.3□□□□□ -2.2
PEP8YJL053W NUP159P40477 1460 aa1.3□□□□□ -2.2
PEP8YJL053W STU1P38198 1513 aa1.3□□□□□ -2.2
PEP8YJL053W RKR1Q04781 1562 aa1.3□□□□□ -2.2
PEP8YJL053W ESP1Q03018 1630 aa1.29□□□□□ -2.2
PEP8YJL053W CDC33P07260 213 aaKnown RBP1.29□□□□□ -2.2
PEP8YJL053W RPL27BP0C2H7 136 aaKnown RBP1.29□□□□□ -2.2
PEP8YJL053W GCN3P14741 305 aa1.29□□□□□ -2.2
PEP8YJL053W RPB4P20433 221 aaPredicted RBP1.29□□□□□ -2.2
PEP8YJL053W PTM1P32857 523 aa1.29□□□□□ -2.2
PEP8YJL053W TRM5P38793 499 aa1.29□□□□□ -2.2
PEP8YJL053W YER135CP40082 130 aa1.29□□□□□ -2.2
PEP8YJL053W BOL2P53082 120 aa1.29□□□□□ -2.2
PEP8YJL053W PDR17P53844 350 aa1.29□□□□□ -2.2
PEP8YJL053W MDM32Q12171 622 aa1.29□□□□□ -2.2
PEP8YJL053W TRM3Q07527 1436 aa1.29□□□□□ -2.2
PEP8YJL053W IRA2P19158 3079 aa1.29□□□□□ -2.2
PEP8YJL053W UTP20P35194 2493 aaKnown RBP1.28□□□□□ -2.2
PEP8YJL053W RPL25P04456 142 aaKnown RBP1.28□□□□□ -2.2
PEP8YJL053W URA5P13298 226 aaKnown RBP1.28□□□□□ -2.2
PEP8YJL053W MAG1P22134 296 aaKnown RBP1.28□□□□□ -2.2
PEP8YJL053W BET1P22804 142 aa1.28□□□□□ -2.2
PEP8YJL053W YKR045CP36138 183 aa1.28□□□□□ -2.2
PEP8YJL053W MRPL17P36528 281 aa1.28□□□□□ -2.2
PEP8YJL053W YBR219CP38317 127 aa1.28□□□□□ -2.2
PEP8YJL053W CWC23P52868 283 aaPredicted RBP1.28□□□□□ -2.2
PEP8YJL053W DOC1P53068 250 aa1.28□□□□□ -2.2
PEP8YJL053W SAY1P53324 424 aa1.28□□□□□ -2.2
PEP8YJL053W TIM11P81449 96 aaPredicted RBP1.28□□□□□ -2.2
PEP8YJL053W YPL162CQ12042 273 aa1.28□□□□□ -2.2
PEP8YJL053W TAO3P40468 2376 aa1.28□□□□□ -2.2
PEP8YJL053W VTH1P40438 1549 aa1.27□□□□□ -2.21
PEP8YJL053W VTH2P40890 1549 aa1.27□□□□□ -2.21
PEP8YJL053W FLO9P39712 1322 aa1.27□□□□□ -2.21
PEP8YJL053W TUS1Q06412 1307 aa1.27□□□□□ -2.21
PEP8YJL053W TIM9O74700 87 aa1.27□□□□□ -2.21
PEP8YJL053W SEC4P07560 215 aaKnown RBP1.27□□□□□ -2.21
PEP8YJL053W KSS1P14681 368 aa1.27□□□□□ -2.21
PEP8YJL053W SIP3P38717 1229 aa1.27□□□□□ -2.21
PEP8YJL053W GVP36P40531 326 aaKnown RBP1.27□□□□□ -2.21
PEP8YJL053W MZM1Q03429 123 aaPredicted RBP1.27□□□□□ -2.21
PEP8YJL053W YMR226CQ05016 267 aaKnown RBP1.27□□□□□ -2.21
PEP8YJL053W GPM2Q12008 311 aa1.27□□□□□ -2.21
PEP8YJL053W PDR12Q02785 1511 aa1.26□□□□□ -2.21
PEP8YJL053W IQG1Q12280 1495 aa1.26□□□□□ -2.21
PEP8YJL053W YDR157WA0A023PZE8 133 aa1.26□□□□□ -2.21
PEP8YJL053W YGL010WP25338 174 aa1.26□□□□□ -2.21
PEP8YJL053W TFC1P32367 649 aa1.26□□□□□ -2.21
PEP8YJL053W SEC17P32602 292 aa1.26□□□□□ -2.21
PEP8YJL053W TMA19P35691 167 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W YCR087C-AP37263 153 aa1.26□□□□□ -2.21
PEP8YJL053W YBR285WP38354 144 aa1.26□□□□□ -2.21
PEP8YJL053W IKI1P38874 309 aa1.26□□□□□ -2.21
PEP8YJL053W HMF1P40037 129 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W RPL13BP40212 199 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W YRB2P40517 327 aa1.26□□□□□ -2.21
PEP8YJL053W YGR050CP53231 118 aa1.26□□□□□ -2.21
PEP8YJL053W LSM7P53905 115 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W CWC21Q03375 135 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W FSF1Q12029 327 aaKnown RBP1.26□□□□□ -2.21
PEP8YJL053W MCP1Q12106 302 aa1.26□□□□□ -2.21
PEP8YJL053W RPL13AQ12690 199 aaPredicted RBP1.26□□□□□ -2.21
PEP8YJL053W YIL177CP40434 1758 aa1.26□□□□□ -2.21
PEP8YJL053W YJL225CP40889 1758 aa1.26□□□□□ -2.21
PEP8YJL053W SNQ2P32568 1501 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W NUP170P38181 1502 aa1.25□□□□□ -2.21
PEP8YJL053W CAT8P39113 1433 aa1.25□□□□□ -2.21
PEP8YJL053W HTB1P02293 131 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W HTB2P02294 131 aa1.25□□□□□ -2.21
PEP8YJL053W ARG80P07249 177 aa1.25□□□□□ -2.21
PEP8YJL053W MER1P16523 270 aa1.25□□□□□ -2.21
PEP8YJL053W CKS1P20486 150 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W SPS18P32572 300 aa1.25□□□□□ -2.21
PEP8YJL053W SHE2P36068 246 aaKnown RBP RIP-Chip data1.25□□□□□ -2.21not detected
PEP8YJL053W UTP30P36144 274 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W YBR209WP38311 105 aa1.25□□□□□ -2.21
PEP8YJL053W RFC4P40339 323 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W EAF6P47128 113 aa1.25□□□□□ -2.21
PEP8YJL053W CGR1P53188 120 aa1.25□□□□□ -2.21
PEP8YJL053W YNR077CP53758 84 aa1.25□□□□□ -2.21
PEP8YJL053W YDR249CQ03787 373 aa1.25□□□□□ -2.21
PEP8YJL053W GRX3Q03835 250 aa1.25□□□□□ -2.21
PEP8YJL053W ANT1Q06497 328 aa1.25□□□□□ -2.21
PEP8YJL053W YRA1Q12159 226 aaKnown RBP1.25□□□□□ -2.21
PEP8YJL053W GIS3Q12418 502 aa1.25□□□□□ -2.21
PEP8YJL053W YHR214C-EQ8TGK0 99 aa1.25□□□□□ -2.21
PEP8YJL053W ATG40Q99325 256 aa1.25□□□□□ -2.21
PEP8YJL053W BUD3P25558 1636 aa1.25□□□□□ -2.21
PEP8YJL053W GDB1Q06625 1536 aa1.25□□□□□ -2.21
PEP8YJL053W PDR18P53756 1333 aa1.24□□□□□ -2.21
PEP8YJL053W YBR220CP38318 560 aa1.24□□□□□ -2.21
PEP8YJL053W YAP3P38749 330 aa1.24□□□□□ -2.21
PEP8YJL053W GAA1P39012 614 aa1.24□□□□□ -2.21
PEP8YJL053W ERJ5P43613 295 aaPredicted RBP1.24□□□□□ -2.21
PEP8YJL053W COG5P53951 403 aa1.24□□□□□ -2.21
PEP8YJL053W YLR162WQ06235 118 aa1.24□□□□□ -2.21
PEP8YJL053W PDR10P51533 1564 aa1.24□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 87.6 ms