RNA–Protein interactions for RNA: YPL008W

CHL1, Transcript of Probable DNA helicase, yeast

Gene CHL1, Length 2,586 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL1	YPL008W	HAT1	Q12341	374 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	EDE1	P34216	1381 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	TRL1	P09880	827 aa	Known RBP	4.93	□□□□□ -1.62
CHL1	YPL008W	TPD3	P31383	635 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	PEP12	P32854	288 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	RIM21	P48565	533 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	FPK1	P53739	893 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	YNL050C	P53952	270 aa		4.93	□□□□□ -1.62
CHL1	YPL008W	HEF3	P53978	1044 aa	Known RBP	4.93	□□□□□ -1.62
CHL1	YPL008W	ECM16	Q04217	1267 aa	Known RBP	4.93	□□□□□ -1.62
CHL1	YPL008W	CDC3	P32457	520 aa	Known RBP	4.92	□□□□□ -1.62
CHL1	YPL008W	AKL1	P38080	1108 aa	Known RBP	4.92	□□□□□ -1.62
CHL1	YPL008W	PIB1	Q06651	286 aa		4.92	□□□□□ -1.62
CHL1	YPL008W	RAD59	Q12223	238 aa		4.92	□□□□□ -1.62
CHL1	YPL008W	WHI5	Q12416	295 aa		4.92	□□□□□ -1.62
CHL1	YPL008W	RPC31	P17890	251 aa		4.92	□□□□□ -1.62
CHL1	YPL008W	YRF1-2	P40105	1681 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	GYP7	P48365	746 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	GAS4	Q08271	471 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	YIL092W	P40497	633 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	TEA1	P47988	759 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	SNU71	P53207	620 aa	Known RBP	4.91	□□□□□ -1.62
CHL1	YPL008W	HST2	P53686	357 aa		4.91	□□□□□ -1.62
CHL1	YPL008W	ESS1	P22696	170 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	SPC42	P36094	363 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	THI12	P42883	340 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	THI5	P43534	340 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	THI11	P47183	340 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	DSD1	P53095	428 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	UBP10	P53874	792 aa	Predicted RBP	4.9	□□□□□ -1.62
CHL1	YPL008W	THI13	Q07748	340 aa		4.9	□□□□□ -1.62
CHL1	YPL008W	HAA1	Q12753	694 aa	Known RBP	4.9	□□□□□ -1.62
CHL1	YPL008W	HEM3	P28789	327 aa		4.9	□□□□□ -1.63
CHL1	YPL008W	YIR014W	P40570	242 aa		4.9	□□□□□ -1.63
CHL1	YPL008W	ZDS1	P50111	915 aa	Known RBP	4.9	□□□□□ -1.63
CHL1	YPL008W	AOS1	Q06624	347 aa		4.9	□□□□□ -1.63
CHL1	YPL008W	LAM6	Q08001	693 aa		4.9	□□□□□ -1.63
CHL1	YPL008W	STB3	Q12427	513 aa		4.9	□□□□□ -1.63
CHL1	YPL008W	LYS2	P07702	1392 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	TGL4	P36165	910 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	RTT109	Q07794	436 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	UGA3	P26370	528 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	GUT1	P32190	709 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	YBL036C	P38197	257 aa		4.89	□□□□□ -1.63
CHL1	YPL008W	NTH2	P35172	780 aa		4.88	□□□□□ -1.63
CHL1	YPL008W	NSE3	Q05541	303 aa		4.88	□□□□□ -1.63
CHL1	YPL008W	SIT4	P20604	311 aa		4.88	□□□□□ -1.63
CHL1	YPL008W	PRP5	P21372	849 aa	Predicted RBP	4.88	□□□□□ -1.63
CHL1	YPL008W	SIS2	P36024	562 aa		4.88	□□□□□ -1.63
CHL1	YPL008W	MAG2	Q06436	670 aa	Known RBP	4.88	□□□□□ -1.63
CHL1	YPL008W	DAL5	P15365	543 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	FAR11	P53917	953 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	SLM3	Q12093	417 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	ERP5	P38819	212 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	FUN12	P39730	1002 aa	Known RBP	4.87	□□□□□ -1.63
CHL1	YPL008W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
CHL1	YPL008W	YPP1	P46951	817 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	POL32	P47110	350 aa		4.87	□□□□□ -1.63
CHL1	YPL008W	MDJ2	P42834	146 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	SAM3	Q08986	587 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	KCC4	P25389	1037 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	RAD54	P32863	898 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	TCB1	Q12466	1186 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	TY4B-H	P0C2J7	1802 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	TY4B-J	P47024	1803 aa		4.86	□□□□□ -1.63
CHL1	YPL008W	HSP104	P31539	908 aa	Known RBP	4.85	□□□□□ -1.63
CHL1	YPL008W	RRT14	P40470	206 aa		4.85	□□□□□ -1.63
CHL1	YPL008W	MEC3	Q02574	474 aa		4.85	□□□□□ -1.63
CHL1	YPL008W	SLX5	P32828	619 aa	Known RBP	4.85	□□□□□ -1.63
CHL1	YPL008W	EAF7	P53911	425 aa	Known RBP	4.85	□□□□□ -1.63
CHL1	YPL008W	PKH3	Q03306	898 aa	Predicted RBP	4.85	□□□□□ -1.63
CHL1	YPL008W	FKS3	Q04952	1785 aa		4.84	□□□□□ -1.63
CHL1	YPL008W	RSF2	P46974	1380 aa		4.84	□□□□□ -1.63
CHL1	YPL008W	PRP45	P28004	379 aa	Predicted RBP	4.84	□□□□□ -1.63
CHL1	YPL008W	RPL34A	P87262	121 aa	Predicted RBP	4.84	□□□□□ -1.63
CHL1	YPL008W	SRT1	Q03175	343 aa		4.84	□□□□□ -1.64
CHL1	YPL008W	PUF6	Q04373	656 aa	Known RBP	4.84	□□□□□ -1.64
CHL1	YPL008W	GRE2	Q12068	342 aa	Known RBP	4.84	□□□□□ -1.64
CHL1	YPL008W	YBL113C	Q7M4S9	792 aa		4.84	□□□□□ -1.64
CHL1	YPL008W	RRP5	Q05022	1729 aa	Known RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	RPS19A	P07280	144 aa	Known RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	RPS19B	P07281	144 aa	Predicted RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	MAK16	P10962	306 aa	Predicted RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	SLD2	P34252	453 aa		4.83	□□□□□ -1.64
CHL1	YPL008W	DOS2	P54858	310 aa		4.83	□□□□□ -1.64
CHL1	YPL008W	CWC15	Q03772	175 aa	Known RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	BMS1	Q08965	1183 aa	Known RBP	4.83	□□□□□ -1.64
CHL1	YPL008W	TRP5	P00931	707 aa	Known RBP	4.82	□□□□□ -1.64
CHL1	YPL008W	XKS1	P42826	600 aa		4.82	□□□□□ -1.64
CHL1	YPL008W	ATH1	P48016	1211 aa		4.82	□□□□□ -1.64
CHL1	YPL008W	YOL057W	Q08225	711 aa		4.82	□□□□□ -1.64
CHL1	YPL008W	MSC6	Q08818	692 aa	Known RBP	4.82	□□□□□ -1.64
CHL1	YPL008W	SLI15	P38283	698 aa		4.82	□□□□□ -1.64
CHL1	YPL008W	MMP1	Q12372	583 aa		4.82	□□□□□ -1.64
CHL1	YPL008W	YNG2	P38806	282 aa	Known RBP	4.81	□□□□□ -1.64
CHL1	YPL008W	RAD50	P12753	1312 aa		4.81	□□□□□ -1.64
CHL1	YPL008W	URB1	P34241	1764 aa	Known RBP	4.81	□□□□□ -1.64
CHL1	YPL008W	IME2	P32581	645 aa		4.81	□□□□□ -1.64
CHL1	YPL008W	BOL3	P39724	118 aa		4.81	□□□□□ -1.64
CHL1	YPL008W	RPL34B	P40525	121 aa	Known RBP	4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 16.2 ms