RNA–Protein interactions for RNA: YOR035C

SHE4, Transcript of Protein containing a UCS (UNC-45/CRO1/SHE4) domain, yeast

Gene SHE4, Length 2,370 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE4	YOR035C	NUP85	P46673	744 aa		5.12	□□□□□ -1.59
SHE4	YOR035C	CYT1	P07143	309 aa		5.12	□□□□□ -1.59
SHE4	YOR035C	VAN1	P23642	535 aa		5.12	□□□□□ -1.59
SHE4	YOR035C	LSC2	P53312	427 aa		5.11	□□□□□ -1.59
SHE4	YOR035C	SUM1	P46676	1062 aa		5.09	□□□□□ -1.59
SHE4	YOR035C	TRS33	Q99394	268 aa		5.09	□□□□□ -1.59
SHE4	YOR035C	ALA1	P40825	983 aa	Known RBP	5.09	□□□□□ -1.59
SHE4	YOR035C	YJR098C	P47139	656 aa		5.09	□□□□□ -1.59
SHE4	YOR035C	YLR346C	Q06139	101 aa		5.08	□□□□□ -1.6
SHE4	YOR035C	PUN1	Q06991	263 aa		5.08	□□□□□ -1.6
SHE4	YOR035C	CWH41	P53008	833 aa		5.07	□□□□□ -1.6
SHE4	YOR035C	PUF6	Q04373	656 aa	Known RBP	5.07	□□□□□ -1.6
SHE4	YOR035C	UBP1	P25037	809 aa		5.07	□□□□□ -1.6
SHE4	YOR035C	TCB1	Q12466	1186 aa		5.07	□□□□□ -1.6
SHE4	YOR035C	YPQ2	Q06328	317 aa		5.06	□□□□□ -1.6
SHE4	YOR035C	CDC3	P32457	520 aa	Known RBP	5.05	□□□□□ -1.6
SHE4	YOR035C	AHP1	P38013	176 aa	Known RBP	5.05	□□□□□ -1.6
SHE4	YOR035C	OPT2	Q06593	877 aa		5.05	□□□□□ -1.6
SHE4	YOR035C	MCM1	P11746	286 aa		5.05	□□□□□ -1.6
SHE4	YOR035C	MET22	P32179	357 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	NGR1	P32831	672 aa	Known RBP	5.04	□□□□□ -1.6
SHE4	YOR035C	SSN3	P39073	555 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	MSN5	P52918	1224 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	UBP2	Q01476	1272 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	CWC15	Q03772	175 aa	Known RBP	5.04	□□□□□ -1.6
SHE4	YOR035C	SRS2	P12954	1174 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	YDR444W	Q04093	687 aa		5.04	□□□□□ -1.6
SHE4	YOR035C	GLY1	P37303	387 aa	Known RBP	5.03	□□□□□ -1.6
SHE4	YOR035C	TPS3	P38426	1054 aa	Known RBP	5.03	□□□□□ -1.6
SHE4	YOR035C	ALD4	P46367	519 aa	Known RBP	5.03	□□□□□ -1.6
SHE4	YOR035C	FOX2	Q02207	900 aa	Known RBP	5.03	□□□□□ -1.6
SHE4	YOR035C	SUV3	P32580	737 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	JJJ2	P46997	583 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	SCW11	P53189	542 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	PNP1	Q05788	311 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	LCB5	Q06147	687 aa	Known RBP	5.02	□□□□□ -1.61
SHE4	YOR035C	DAL1	P32375	460 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	VTC4	P47075	721 aa		5.02	□□□□□ -1.61
SHE4	YOR035C	GAR1	P28007	205 aa	Known RBP	5.01	□□□□□ -1.61
SHE4	YOR035C	YTA6	P40328	754 aa		5	□□□□□ -1.61
SHE4	YOR035C	KAR5	Q04746	504 aa		5	□□□□□ -1.61
SHE4	YOR035C	TY1A-DR3	Q12441	440 aa		5	□□□□□ -1.61
SHE4	YOR035C	Q0182	Q9ZZW1	134 aa		5	□□□□□ -1.61
SHE4	YOR035C	IRE1	P32361	1115 aa		5	□□□□□ -1.61
SHE4	YOR035C	SHM1	P37292	490 aa	Predicted RBP	5	□□□□□ -1.61
SHE4	YOR035C	CDC19	P00549	500 aa	Known RBP	4.99	□□□□□ -1.61
SHE4	YOR035C	GBP2	P25555	427 aa	Known RBP RIP-Chip data	4.99	□□□□□ -1.61	not detected
SHE4	YOR035C	SLA1	P32790	1244 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	SCD5	P34758	872 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	HXT5	P38695	592 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	YNL165W	P53891	406 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	ISC10	P32645	267 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	RRN6	P32786	894 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	RGA1	P39083	1007 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	CAB1	Q04430	367 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	TY1A-BL	Q12266	440 aa		4.99	□□□□□ -1.61
SHE4	YOR035C	FUR4	P05316	633 aa	Known RBP	4.98	□□□□□ -1.61
SHE4	YOR035C	MLF3	P32047	452 aa		4.98	□□□□□ -1.61
SHE4	YOR035C	YBR197C	P38306	217 aa		4.98	□□□□□ -1.61
SHE4	YOR035C	OSH7	P38755	437 aa		4.98	□□□□□ -1.61
SHE4	YOR035C	HAT1	Q12341	374 aa		4.98	□□□□□ -1.61
SHE4	YOR035C	UBP15	P50101	1230 aa		4.97	□□□□□ -1.61
SHE4	YOR035C	PDC6	P26263	563 aa	Known RBP	4.97	□□□□□ -1.61
SHE4	YOR035C	BOL3	P39724	118 aa		4.97	□□□□□ -1.61
SHE4	YOR035C	PSH1	Q12161	406 aa		4.97	□□□□□ -1.61
SHE4	YOR035C	RPS31	P05759	152 aa	Known RBP	4.96	□□□□□ -1.62
SHE4	YOR035C	MRPL33	P20084	86 aa		4.95	□□□□□ -1.62
SHE4	YOR035C	CAF120	P53836	1060 aa		4.95	□□□□□ -1.62
SHE4	YOR035C	UTP4	Q06679	776 aa	Known RBP	4.95	□□□□□ -1.62
SHE4	YOR035C	MTO1	P53070	669 aa		4.94	□□□□□ -1.62
SHE4	YOR035C	NAM8	Q00539	523 aa	Known RBP	4.94	□□□□□ -1.62
SHE4	YOR035C	YBL113C	Q7M4S9	792 aa		4.94	□□□□□ -1.62
SHE4	YOR035C	ROG3	P43602	733 aa		4.94	□□□□□ -1.62
SHE4	YOR035C	VMA3	P25515	160 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	GRS1	P38088	690 aa	Known RBP	4.93	□□□□□ -1.62
SHE4	YOR035C	GLO3	P38682	493 aa	Known RBP	4.93	□□□□□ -1.62
SHE4	YOR035C	LSO1	Q3E827	93 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	LEU1	P07264	779 aa	Known RBP	4.93	□□□□□ -1.62
SHE4	YOR035C	BOI1	P38041	980 aa	Known RBP	4.93	□□□□□ -1.62
SHE4	YOR035C	SSF1	P38789	453 aa	Predicted RBP	4.93	□□□□□ -1.62
SHE4	YOR035C	ERP5	P38819	212 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	QDR2	P40474	542 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	YIR007W	P40566	764 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	YML020W	Q03722	664 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	TY1A-MR1	Q04215	440 aa		4.93	□□□□□ -1.62
SHE4	YOR035C	ACO2	P39533	789 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	KAP122	P32767	1081 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	QDR1	P40475	563 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	ALD2	P47771	506 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	SUT1	P53032	299 aa	Known RBP	4.92	□□□□□ -1.62
SHE4	YOR035C	ATG1	P53104	897 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	STB3	Q12427	513 aa		4.92	□□□□□ -1.62
SHE4	YOR035C	LDH1	P38139	375 aa		4.91	□□□□□ -1.62
SHE4	YOR035C	YMR265C	Q03508	461 aa	Known RBP	4.91	□□□□□ -1.62
SHE4	YOR035C	RPB10	P22139	70 aa		4.91	□□□□□ -1.62
SHE4	YOR035C	MRPL16	P38064	232 aa		4.91	□□□□□ -1.62
SHE4	YOR035C	DYS1	P38791	387 aa		4.91	□□□□□ -1.62
SHE4	YOR035C	RGP1	P16664	663 aa		4.9	□□□□□ -1.62
SHE4	YOR035C	CUZ1	P53899	274 aa		4.89	□□□□□ -1.63
SHE4	YOR035C	TRL1	P09880	827 aa	Known RBP	4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms