RNA–Protein interactions for RNA: YOR018W

ROD1, Transcript of Alpha-arrestin involved in ubiquitin-dependent endocytosis, yeast

Gene ROD1, Length 2,514 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ROD1	YOR018W	RAD4	P14736	754 aa		4.81	□□□□□ -1.64
ROD1	YOR018W	APL2	P36000	726 aa	Predicted RBP	4.81	□□□□□ -1.64
ROD1	YOR018W	PIB1	Q06651	286 aa		4.81	□□□□□ -1.64
ROD1	YOR018W	SOL3	P38858	249 aa		4.81	□□□□□ -1.64
ROD1	YOR018W	GYP7	P48365	746 aa		4.81	□□□□□ -1.64
ROD1	YOR018W	YBP2	P53169	641 aa		4.81	□□□□□ -1.64
ROD1	YOR018W	KCC4	P25389	1037 aa		4.8	□□□□□ -1.64
ROD1	YOR018W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
ROD1	YOR018W	YMR074C	Q04773	145 aa		4.8	□□□□□ -1.64
ROD1	YOR018W	GUA1	P38625	525 aa	Known RBP	4.8	□□□□□ -1.64
ROD1	YOR018W	ROM2	P51862	1356 aa	Known RBP	4.79	□□□□□ -1.64
ROD1	YOR018W	TGL3	P40308	642 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	HXT10	P43581	546 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	MEC3	Q02574	474 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	FCP1	Q03254	732 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	YLR326W	Q06170	240 aa	Known RBP	4.79	□□□□□ -1.64
ROD1	YOR018W	TRP5	P00931	707 aa	Known RBP	4.79	□□□□□ -1.64
ROD1	YOR018W	RAD24	P32641	659 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
ROD1	YOR018W	YGL082W	P53155	381 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	VPS64	Q03944	604 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	CSI1	Q04368	295 aa		4.79	□□□□□ -1.64
ROD1	YOR018W	YAP5	P40574	245 aa		4.78	□□□□□ -1.64
ROD1	YOR018W	MST1	P07236	462 aa		4.78	□□□□□ -1.64
ROD1	YOR018W	ARG8	P18544	423 aa		4.78	□□□□□ -1.64
ROD1	YOR018W	CTH1	P47976	325 aa		4.78	□□□□□ -1.64
ROD1	YOR018W	MAK21	Q12176	1025 aa	Known RBP	4.78	□□□□□ -1.64
ROD1	YOR018W	POL32	P47110	350 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	CTF4	Q01454	927 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	PUF6	Q04373	656 aa	Known RBP	4.77	□□□□□ -1.65
ROD1	YOR018W	SAM3	Q08986	587 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	YPR204W	Q08995	1032 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	RLF2	Q12495	606 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	SLA1	P32790	1244 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	VHR2	P40041	505 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	YOL057W	Q08225	711 aa		4.77	□□□□□ -1.65
ROD1	YOR018W	UGA3	P26370	528 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	NUP133	P36161	1157 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	MAM1	P40065	302 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	NSE3	Q05541	303 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	LAM6	Q08001	693 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	CTI6	Q08923	506 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	SER1	P33330	395 aa	Known RBP	4.76	□□□□□ -1.65
ROD1	YOR018W	TEA1	P47988	759 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	SPO1	P53541	631 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	RMT2	Q03305	412 aa		4.76	□□□□□ -1.65
ROD1	YOR018W	GRE2	Q12068	342 aa	Known RBP	4.76	□□□□□ -1.65
ROD1	YOR018W	YJL181W	P46987	611 aa		4.75	□□□□□ -1.65
ROD1	YOR018W	YGR273C	P53329	174 aa		4.75	□□□□□ -1.65
ROD1	YOR018W	SWI1	P09547	1314 aa		4.75	□□□□□ -1.65
ROD1	YOR018W	RAD2	P07276	1031 aa		4.75	□□□□□ -1.65
ROD1	YOR018W	CAF20	P12962	161 aa	Known RBP	4.75	□□□□□ -1.65
ROD1	YOR018W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.75	□□□□□ -1.65	not detected
ROD1	YOR018W	YDR306C	Q06640	478 aa		4.75	□□□□□ -1.65
ROD1	YOR018W	RIX7	Q07844	837 aa	Known RBP	4.75	□□□□□ -1.65
ROD1	YOR018W	GUT1	P32190	709 aa		4.74	□□□□□ -1.65
ROD1	YOR018W	MSB4	Q12317	492 aa		4.74	□□□□□ -1.65
ROD1	YOR018W	MRP7	P12687	371 aa		4.74	□□□□□ -1.65
ROD1	YOR018W	PRP40	P33203	583 aa	Known RBP	4.74	□□□□□ -1.65
ROD1	YOR018W	NYV1	Q12255	253 aa		4.74	□□□□□ -1.65
ROD1	YOR018W	LPD1	P09624	499 aa	Known RBP	4.73	□□□□□ -1.65
ROD1	YOR018W	EDE1	P34216	1381 aa		4.73	□□□□□ -1.65
ROD1	YOR018W	GRX1	P25373	110 aa	Known RBP	4.73	□□□□□ -1.65
ROD1	YOR018W	YBL086C	P38177	466 aa		4.73	□□□□□ -1.65
ROD1	YOR018W	YNG2	P38806	282 aa	Known RBP	4.73	□□□□□ -1.65
ROD1	YOR018W	NOP2	P40991	618 aa	Known RBP	4.73	□□□□□ -1.65
ROD1	YOR018W	RIM15	P43565	1770 aa		4.72	□□□□□ -1.65
ROD1	YOR018W	KEX1	P09620	729 aa		4.72	□□□□□ -1.65
ROD1	YOR018W	BOI2	P39969	1040 aa		4.72	□□□□□ -1.65
ROD1	YOR018W	YRB30	P53107	440 aa	Predicted RBP	4.72	□□□□□ -1.65
ROD1	YOR018W	PKH1	Q03407	766 aa		4.72	□□□□□ -1.65
ROD1	YOR018W	RPS19A	P07280	144 aa	Known RBP	4.71	□□□□□ -1.66
ROD1	YOR018W	RPS19B	P07281	144 aa	Predicted RBP	4.71	□□□□□ -1.66
ROD1	YOR018W	YPP1	P46951	817 aa		4.71	□□□□□ -1.66
ROD1	YOR018W	ORC6	P38826	435 aa		4.71	□□□□□ -1.66
ROD1	YOR018W	DNM1	P54861	757 aa		4.71	□□□□□ -1.66
ROD1	YOR018W	CST6	P40535	587 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	ATH1	P48016	1211 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	HPC2	Q01448	625 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	RMD1	Q03441	430 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	SSP2	Q08646	371 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	PHM7	Q12252	991 aa		4.7	□□□□□ -1.66
ROD1	YOR018W	LYS2	P07702	1392 aa		4.69	□□□□□ -1.66
ROD1	YOR018W	KTR1	P27810	393 aa	Known RBP	4.69	□□□□□ -1.66
ROD1	YOR018W	UBP12	P39538	1254 aa		4.69	□□□□□ -1.66
ROD1	YOR018W	ITC1	P53125	1264 aa		4.69	□□□□□ -1.66
ROD1	YOR018W	UBP16	Q02863	499 aa		4.69	□□□□□ -1.66
ROD1	YOR018W	NOP8	Q08287	484 aa	Predicted RBP	4.69	□□□□□ -1.66
ROD1	YOR018W	SSA2	P10592	639 aa	Known RBP	4.69	□□□□□ -1.66
ROD1	YOR018W	UBP1	P25037	809 aa		4.69	□□□□□ -1.66
ROD1	YOR018W	KTR3	P38130	404 aa	Predicted RBP	4.69	□□□□□ -1.66
ROD1	YOR018W	YFR016C	P43597	1233 aa	Known RBP	4.69	□□□□□ -1.66
ROD1	YOR018W	PKC1	P24583	1151 aa		4.68	□□□□□ -1.66
ROD1	YOR018W	PSE1	P32337	1089 aa	Known RBP	4.68	□□□□□ -1.66
ROD1	YOR018W	NMD2	P38798	1089 aa	Known RBP	4.68	□□□□□ -1.66
ROD1	YOR018W	TFB3	Q03290	321 aa		4.68	□□□□□ -1.66
ROD1	YOR018W	GAP1	P19145	602 aa	Predicted RBP	4.68	□□□□□ -1.66
ROD1	YOR018W	TOS1	P38288	455 aa		4.68	□□□□□ -1.66
ROD1	YOR018W	RFC1	P38630	861 aa	Known RBP	4.68	□□□□□ -1.66
ROD1	YOR018W	PIB2	P53191	635 aa		4.68	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 90.6 ms