RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C YDR306CQ06640 478 aa6.08□□□□□ -1.44
NUP116YMR047C ZDS1P50111 915 aaKnown RBP6.07□□□□□ -1.44
NUP116YMR047C YPR204WQ08995 1032 aa6.07□□□□□ -1.44
NUP116YMR047C SPT21P35209 758 aa6.07□□□□□ -1.44
NUP116YMR047C DNM1P54861 757 aa6.07□□□□□ -1.44
NUP116YMR047C ALE1Q08548 619 aa6.06□□□□□ -1.44
NUP116YMR047C GYP7P48365 746 aa6.06□□□□□ -1.44
NUP116YMR047C CWH41P53008 833 aa6.05□□□□□ -1.44
NUP116YMR047C SMY1P32364 656 aaKnown RBP6.05□□□□□ -1.44
NUP116YMR047C RTG2P32608 588 aaKnown RBP6.05□□□□□ -1.44
NUP116YMR047C MTC5Q03897 1148 aa6.05□□□□□ -1.44
NUP116YMR047C GSC2P40989 1895 aa6.05□□□□□ -1.44
NUP116YMR047C CST6P40535 587 aa6.04□□□□□ -1.44
NUP116YMR047C HEF3P53978 1044 aaKnown RBP6.04□□□□□ -1.44
NUP116YMR047C RTR1P40084 226 aaPredicted RBP6.04□□□□□ -1.44
NUP116YMR047C HGH1P48362 394 aaKnown RBP6.04□□□□□ -1.44
NUP116YMR047C IRC3Q06683 689 aa6.04□□□□□ -1.44
NUP116YMR047C DCD1P06773 312 aa6.04□□□□□ -1.44
NUP116YMR047C SSA4P22202 642 aaKnown RBP6.04□□□□□ -1.44
NUP116YMR047C SWI1P09547 1314 aa6.03□□□□□ -1.44
NUP116YMR047C GLC3P32775 704 aa6.03□□□□□ -1.44
NUP116YMR047C PSF3Q12146 194 aa6.03□□□□□ -1.44
NUP116YMR047C RET1P22276 1149 aaKnown RBP6.03□□□□□ -1.44
NUP116YMR047C BUD27P43573 796 aaKnown RBP RIP-Chip data6.03□□□□□ -1.44not detected
NUP116YMR047C THI22Q06490 572 aa6.03□□□□□ -1.44
NUP116YMR047C COQ4O13525 335 aa6.02□□□□□ -1.45
NUP116YMR047C YKU70P32807 602 aa6.02□□□□□ -1.45
NUP116YMR047C SER1P33330 395 aaKnown RBP6.01□□□□□ -1.45
NUP116YMR047C TIM50Q02776 476 aa6□□□□□ -1.45
NUP116YMR047C BMS1Q08965 1183 aaKnown RBP6□□□□□ -1.45
NUP116YMR047C CRF1Q04930 467 aa6□□□□□ -1.45
NUP116YMR047C DPL1Q05567 589 aa6□□□□□ -1.45
NUP116YMR047C NUG1P40010 520 aaKnown RBP5.99□□□□□ -1.45
NUP116YMR047C PSD2P53037 1138 aaKnown RBP5.99□□□□□ -1.45
NUP116YMR047C SRF1Q12516 437 aa5.99□□□□□ -1.45
NUP116YMR047C SQS1P53866 767 aaKnown RBP5.98□□□□□ -1.45
NUP116YMR047C AAD16Q02895 342 aa5.98□□□□□ -1.45
NUP116YMR047C DPH6Q12429 685 aa5.98□□□□□ -1.45
NUP116YMR047C ADR1P07248 1323 aa5.98□□□□□ -1.45
NUP116YMR047C MSM1P22438 575 aa5.98□□□□□ -1.45
NUP116YMR047C ETP1P38748 585 aaKnown RBP5.97□□□□□ -1.45
NUP116YMR047C TIF4632P39936 914 aaKnown RBP5.97□□□□□ -1.45
NUP116YMR047C DAL5P15365 543 aa5.97□□□□□ -1.45
NUP116YMR047C YPP1P46951 817 aa5.97□□□□□ -1.45
NUP116YMR047C TCB2P48231 1178 aa5.97□□□□□ -1.45
NUP116YMR047C RTT109Q07794 436 aa5.97□□□□□ -1.45
NUP116YMR047C CTI6Q08923 506 aa5.97□□□□□ -1.45
NUP116YMR047C SRT1Q03175 343 aa5.97□□□□□ -1.45
NUP116YMR047C SUP35P05453 685 aaKnown RBP5.96□□□□□ -1.45
NUP116YMR047C NPL4P33755 580 aa5.96□□□□□ -1.45
NUP116YMR047C ICP55P40051 511 aa5.96□□□□□ -1.45
NUP116YMR047C YGL082WP53155 381 aa5.96□□□□□ -1.45
NUP116YMR047C SNU71P53207 620 aaKnown RBP5.96□□□□□ -1.45
NUP116YMR047C MRP7P12687 371 aa5.96□□□□□ -1.46
NUP116YMR047C KRE2P27809 442 aa5.96□□□□□ -1.46
NUP116YMR047C VPS27P40343 622 aaKnown RBP5.95□□□□□ -1.46
NUP116YMR047C YGR117CP53270 476 aa5.95□□□□□ -1.46
NUP116YMR047C SPT2P06843 333 aaPredicted RBP5.95□□□□□ -1.46
NUP116YMR047C ICL1P28240 557 aaPredicted RBP5.95□□□□□ -1.46
NUP116YMR047C RRD1P40454 393 aaKnown RBP5.95□□□□□ -1.46
NUP116YMR047C EMP47P43555 445 aa5.95□□□□□ -1.46
NUP116YMR047C APL2P36000 726 aaPredicted RBP5.94□□□□□ -1.46
NUP116YMR047C SLI15P38283 698 aa5.94□□□□□ -1.46
NUP116YMR047C GRX3Q03835 250 aa5.94□□□□□ -1.46
NUP116YMR047C SAS4Q04003 481 aa5.94□□□□□ -1.46
NUP116YMR047C CDC45Q08032 650 aa5.94□□□□□ -1.46
NUP116YMR047C PEA2P40091 420 aa5.94□□□□□ -1.46
NUP116YMR047C YIL089WP40500 205 aa5.94□□□□□ -1.46
NUP116YMR047C YJL171CP46992 396 aa5.94□□□□□ -1.46
NUP116YMR047C TRP5P00931 707 aaKnown RBP5.94□□□□□ -1.46
NUP116YMR047C RPS19AP07280 144 aaKnown RBP5.94□□□□□ -1.46
NUP116YMR047C RPS19BP07281 144 aaPredicted RBP5.94□□□□□ -1.46
NUP116YMR047C RRT6P53117 311 aaPredicted RBP5.94□□□□□ -1.46
NUP116YMR047C ITC1P53125 1264 aa5.94□□□□□ -1.46
NUP116YMR047C RRG1Q12167 365 aaPredicted RBP5.94□□□□□ -1.46
NUP116YMR047C RPN1P38764 993 aaKnown RBP5.93□□□□□ -1.46
NUP116YMR047C MAK21Q12176 1025 aaKnown RBP5.93□□□□□ -1.46
NUP116YMR047C FRD1P32614 470 aaKnown RBP5.93□□□□□ -1.46
NUP116YMR047C BSD2P38356 321 aa5.93□□□□□ -1.46
NUP116YMR047C YDL144CQ07589 356 aa5.93□□□□□ -1.46
NUP116YMR047C ACK1Q07622 623 aaPredicted RBP5.93□□□□□ -1.46
NUP116YMR047C GEF1P37020 779 aa5.92□□□□□ -1.46
NUP116YMR047C DUS1P53759 423 aaKnown RBP5.92□□□□□ -1.46
NUP116YMR047C HVG1P0CE11 249 aa5.92□□□□□ -1.46
NUP116YMR047C NAB6Q03735 1134 aaKnown RBP RIP-Chip data5.92□□□□□ -1.46not detected
NUP116YMR047C MPP10P47083 593 aaKnown RBP5.91□□□□□ -1.46
NUP116YMR047C MNN4P36044 1178 aa5.91□□□□□ -1.46
NUP116YMR047C UBP12P39538 1254 aa5.91□□□□□ -1.46
NUP116YMR047C SSF1P38789 453 aaPredicted RBP5.91□□□□□ -1.46
NUP116YMR047C CWC15Q03772 175 aaKnown RBP5.91□□□□□ -1.46
NUP116YMR047C CST9Q06032 482 aa5.91□□□□□ -1.46
NUP116YMR047C BOI2P39969 1040 aa5.9□□□□□ -1.46
NUP116YMR047C UTP7P40055 554 aaKnown RBP5.9□□□□□ -1.46
NUP116YMR047C FET4P40988 552 aa5.9□□□□□ -1.46
NUP116YMR047C YGR130CP53278 816 aa5.9□□□□□ -1.46
NUP116YMR047C PIF1P07271 859 aa5.89□□□□□ -1.47
NUP116YMR047C GCD7P32502 381 aaPredicted RBP5.89□□□□□ -1.47
NUP116YMR047C SPL2P38839 148 aa5.89□□□□□ -1.47
NUP116YMR047C FPR3P38911 411 aaKnown RBP5.89□□□□□ -1.47
NUP116YMR047C FPR4Q06205 392 aaPredicted RBP5.89□□□□□ -1.47
Retrieved 100 of 5,963 RNA–protein pairs in 18.4 ms