RNA–Protein interactions for RNA: YLR363C

NMD4, Transcript of Protein that may be involved in nonsense-mediated mRNA decay, yeastyeast

Gene NMD4, Length 657 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NMD4YLR363C TCB1Q12466 1186 aa8.71□□□□□ -1.02
NMD4YLR363C RPS6AP0CX37 236 aaKnown RBP8.7□□□□□ -1.02
NMD4YLR363C RPS6BP0CX38 236 aaPredicted RBP8.7□□□□□ -1.02
NMD4YLR363C UTP7P40055 554 aaKnown RBP8.7□□□□□ -1.02
NMD4YLR363C SUM1P46676 1062 aa8.7□□□□□ -1.02
NMD4YLR363C VTC4P47075 721 aa8.7□□□□□ -1.02
NMD4YLR363C ECM23Q02710 187 aa8.7□□□□□ -1.02
NMD4YLR363C GAS4Q08271 471 aa8.7□□□□□ -1.02
NMD4YLR363C PUP1P25043 261 aa8.69□□□□□ -1.02
NMD4YLR363C SCW11P53189 542 aa8.69□□□□□ -1.02
NMD4YLR363C SWR1Q05471 1514 aa8.69□□□□□ -1.02
NMD4YLR363C GBP2P25555 427 aaKnown RBP RIP-Chip data8.68□□□□□ -1.02not detected
NMD4YLR363C MSN5P52918 1224 aa8.68□□□□□ -1.02
NMD4YLR363C DAL1P32375 460 aa8.67□□□□□ -1.02
NMD4YLR363C DNA2P38859 1522 aa8.67□□□□□ -1.02
NMD4YLR363C SSN3P39073 555 aa8.66□□□□□ -1.02
NMD4YLR363C SUB2Q07478 446 aaKnown RBP8.66□□□□□ -1.02
NMD4YLR363C TY1A-BLQ12266 440 aa8.66□□□□□ -1.02
NMD4YLR363C ALA1P40825 983 aaKnown RBP8.65□□□□□ -1.02
NMD4YLR363C CYT1P07143 309 aa8.64□□□□□ -1.03
NMD4YLR363C ROM1P53046 1155 aa8.64□□□□□ -1.03
NMD4YLR363C UBX7P38349 436 aa8.63□□□□□ -1.03
NMD4YLR363C YPQ2Q06328 317 aa8.63□□□□□ -1.03
NMD4YLR363C NOB1Q08444 459 aaKnown RBP8.63□□□□□ -1.03
NMD4YLR363C OSH7P38755 437 aa8.62□□□□□ -1.03
NMD4YLR363C MCM1P11746 286 aa8.61□□□□□ -1.03
NMD4YLR363C VAN1P23642 535 aa8.61□□□□□ -1.03
NMD4YLR363C AHP1P38013 176 aaKnown RBP8.61□□□□□ -1.03
NMD4YLR363C ACO2P39533 789 aa8.61□□□□□ -1.03
NMD4YLR363C UBP1P25037 809 aa8.6□□□□□ -1.03
NMD4YLR363C TY1B-DR4Q07793 1604 aa8.6□□□□□ -1.03
NMD4YLR363C KOG1P38873 1557 aa8.6□□□□□ -1.03
NMD4YLR363C CDC19P00549 500 aaKnown RBP8.59□□□□□ -1.03
NMD4YLR363C SLA1P32790 1244 aa8.59□□□□□ -1.03
NMD4YLR363C JJJ2P46997 583 aa8.59□□□□□ -1.03
NMD4YLR363C YML083CQ04526 418 aa8.59□□□□□ -1.03
NMD4YLR363C CAF120P53836 1060 aa8.58□□□□□ -1.04
NMD4YLR363C TRS33Q99394 268 aa8.58□□□□□ -1.04
NMD4YLR363C TY1A-DR3Q12441 440 aa8.57□□□□□ -1.04
NMD4YLR363C SGS1P35187 1447 aa8.56□□□□□ -1.04
NMD4YLR363C NGR1P32831 672 aaKnown RBP8.56□□□□□ -1.04
NMD4YLR363C UBP15P50101 1230 aa8.56□□□□□ -1.04
NMD4YLR363C PUF6Q04373 656 aaKnown RBP8.56□□□□□ -1.04
NMD4YLR363C YDL176WQ12027 708 aa8.56□□□□□ -1.04
NMD4YLR363C IRE1P32361 1115 aa8.55□□□□□ -1.04
NMD4YLR363C ROG3P43602 733 aa8.55□□□□□ -1.04
NMD4YLR363C CWH41P53008 833 aa8.55□□□□□ -1.04
NMD4YLR363C YIR007WP40566 764 aa8.54□□□□□ -1.04
NMD4YLR363C TY1A-MR1Q04215 440 aa8.54□□□□□ -1.04
NMD4YLR363C SSA1P10591 642 aaKnown RBP8.52□□□□□ -1.05
NMD4YLR363C SHM1P37292 490 aaPredicted RBP8.52□□□□□ -1.05
NMD4YLR363C NAM8Q00539 523 aaKnown RBP8.51□□□□□ -1.05
NMD4YLR363C YPL062WQ02781 134 aa8.5□□□□□ -1.05
NMD4YLR363C RPS31P05759 152 aaKnown RBP8.49□□□□□ -1.05
NMD4YLR363C SCD5P34758 872 aa8.49□□□□□ -1.05
NMD4YLR363C YTA6P40328 754 aa8.49□□□□□ -1.05
NMD4YLR363C RPL34AP87262 121 aaPredicted RBP8.49□□□□□ -1.05
NMD4YLR363C PUN1Q06991 263 aa8.49□□□□□ -1.05
NMD4YLR363C Q0182Q9ZZW1 134 aa8.49□□□□□ -1.05
NMD4YLR363C PDC6P26263 563 aaKnown RBP8.48□□□□□ -1.05
NMD4YLR363C SUV3P32580 737 aa8.48□□□□□ -1.05
NMD4YLR363C RGA1P39083 1007 aa8.48□□□□□ -1.05
NMD4YLR363C YNL165WP53891 406 aa8.48□□□□□ -1.05
NMD4YLR363C CWC15Q03772 175 aaKnown RBP8.48□□□□□ -1.05
NMD4YLR363C PSH1Q12161 406 aa8.48□□□□□ -1.05
NMD4YLR363C SRS2P12954 1174 aa8.47□□□□□ -1.05
NMD4YLR363C HXT5P38695 592 aa8.47□□□□□ -1.05
NMD4YLR363C UTP4Q06679 776 aaKnown RBP8.47□□□□□ -1.05
NMD4YLR363C CCP1P00431 361 aa8.46□□□□□ -1.06
NMD4YLR363C MLF3P32047 452 aa8.46□□□□□ -1.06
NMD4YLR363C ALD4P46367 519 aaKnown RBP8.45□□□□□ -1.06
NMD4YLR363C CUZ1P53899 274 aa8.44□□□□□ -1.06
NMD4YLR363C LEU1P07264 779 aaKnown RBP8.43□□□□□ -1.06
NMD4YLR363C DIT1P21623 536 aa8.43□□□□□ -1.06
NMD4YLR363C CAB1Q04430 367 aa8.43□□□□□ -1.06
NMD4YLR363C YMR265CQ03508 461 aaKnown RBP8.42□□□□□ -1.06
NMD4YLR363C PNP1Q05788 311 aa8.42□□□□□ -1.06
NMD4YLR363C GEF1P37020 779 aa8.41□□□□□ -1.06
NMD4YLR363C MRPL16P38064 232 aa8.41□□□□□ -1.06
NMD4YLR363C YBR197CP38306 217 aa8.41□□□□□ -1.06
NMD4YLR363C ALD2P47771 506 aa8.4□□□□□ -1.06
NMD4YLR363C FOX2Q02207 900 aaKnown RBP8.4□□□□□ -1.06
NMD4YLR363C TPS3P38426 1054 aaKnown RBP8.39□□□□□ -1.07
NMD4YLR363C LYS5P50113 272 aa8.39□□□□□ -1.07
NMD4YLR363C RRN6P32786 894 aa8.38□□□□□ -1.07
NMD4YLR363C CEM1P39525 442 aa8.38□□□□□ -1.07
NMD4YLR363C MTO1P53070 669 aa8.38□□□□□ -1.07
NMD4YLR363C YGR035CP53222 116 aa8.38□□□□□ -1.07
NMD4YLR363C KRE33P53914 1056 aaKnown RBP8.38□□□□□ -1.07
NMD4YLR363C HPF1Q05164 967 aa8.38□□□□□ -1.07
NMD4YLR363C STB3Q12427 513 aa8.38□□□□□ -1.07
NMD4YLR363C RPP1AP05318 106 aaPredicted RBP8.37□□□□□ -1.07
NMD4YLR363C RGP1P16664 663 aa8.37□□□□□ -1.07
NMD4YLR363C MRPL33P20084 86 aa8.37□□□□□ -1.07
NMD4YLR363C ISC10P32645 267 aa8.37□□□□□ -1.07
NMD4YLR363C KAP122P32767 1081 aa8.37□□□□□ -1.07
NMD4YLR363C YDR461C-AQ2V2P7 80 aa8.37□□□□□ -1.07
NMD4YLR363C DPH6Q12429 685 aa8.36□□□□□ -1.07
NMD4YLR363C CDC3P32457 520 aaKnown RBP8.35□□□□□ -1.07
NMD4YLR363C SPR3P41901 512 aa8.35□□□□□ -1.07
Retrieved 100 of 5,963 RNA–protein pairs in 26.6 ms