RNA–Protein interactions for RNA: YKL068W

NUP100, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP100, Length 2,880 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP100	YKL068W	MAG2	Q06436	670 aa	Known RBP	3	□□□□□ -1.93
NUP100	YKL068W	RPS9B	P05755	195 aa	Known RBP	3	□□□□□ -1.93
NUP100	YKL068W	YAP5	P40574	245 aa		3	□□□□□ -1.93
NUP100	YKL068W	SPT7	P35177	1332 aa		3	□□□□□ -1.93
NUP100	YKL068W	SEC8	P32855	1065 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	TGL4	P36165	910 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	ZDS1	P50111	915 aa	Known RBP	2.99	□□□□□ -1.93
NUP100	YKL068W	MSC6	Q08818	692 aa	Known RBP	2.99	□□□□□ -1.93
NUP100	YKL068W	TIF6	Q12522	245 aa	Known RBP	2.99	□□□□□ -1.93
NUP100	YKL068W	RGR1	P19263	1082 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	RRP14	P36080	434 aa	Known RBP	2.99	□□□□□ -1.93
NUP100	YKL068W	YHL050C	P38721	697 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	YHR219W	P38900	624 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	YEL077C	Q3E7X8	1277 aa		2.99	□□□□□ -1.93
NUP100	YKL068W	ENO2	P00925	437 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	YDJ1	P25491	409 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	SRP40	P32583	406 aa	Predicted RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	PMC1	P38929	1173 aa	Predicted RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	ILV3	P39522	585 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	VAC8	P39968	578 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	WHI5	Q12416	295 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	GRE2	Q12068	342 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	ENT1	Q12518	454 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	GEA1	P47102	1408 aa	Predicted RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	CIT2	P08679	460 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	YKL091C	P33324	310 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	GRS1	P38088	690 aa	Known RBP	2.98	□□□□□ -1.93
NUP100	YKL068W	KTR7	P40504	517 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	ECM23	Q02710	187 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	YOL057W	Q08225	711 aa		2.98	□□□□□ -1.93
NUP100	YKL068W	SUP45	P12385	437 aa	Known RBP	2.97	□□□□□ -1.93
NUP100	YKL068W	AIM21	P40563	679 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	MVP1	P40959	511 aa	Known RBP	2.97	□□□□□ -1.93
NUP100	YKL068W	TEA1	P47988	759 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	ALG12	P53730	551 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	PKH3	Q03306	898 aa	Predicted RBP	2.97	□□□□□ -1.93
NUP100	YKL068W	SVF1	Q05515	481 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	RAD59	Q12223	238 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	STB3	Q12427	513 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	SEC7	P11075	2009 aa	Known RBP	2.97	□□□□□ -1.93
NUP100	YKL068W	IOC3	P43596	787 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	CLA4	P48562	842 aa		2.97	□□□□□ -1.93
NUP100	YKL068W	MPH3	P0CE00	602 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	MET1	P36150	593 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	ATH1	P48016	1211 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	ALD3	P54114	506 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	KAR5	Q04746	504 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	MRX10	Q05648	414 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	AI4	P03878	556 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	SSB1	P11484	613 aa	Known RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	RPA135	P22138	1203 aa	Known RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	ESS1	P22696	170 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	SCJ1	P25303	377 aa		2.96	□□□□□ -1.94
NUP100	YKL068W	TPS3	P38426	1054 aa	Known RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	FPR3	P38911	411 aa	Known RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	SSB2	P40150	613 aa	Known RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	TFG1	P41895	735 aa	Predicted RBP	2.96	□□□□□ -1.94
NUP100	YKL068W	SIT4	P20604	311 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	KIC1	P38692	1080 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	RSC30	P38781	883 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
NUP100	YKL068W	TPM2	P40414	161 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	MDJ2	P42834	146 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	ALD6	P54115	500 aa	Known RBP	2.95	□□□□□ -1.94
NUP100	YKL068W	RAD54	P32863	898 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	UBX7	P38349	436 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	NIS1	P53939	407 aa		2.95	□□□□□ -1.94
NUP100	YKL068W	TRL1	P09880	827 aa	Known RBP	2.94	□□□□□ -1.94
NUP100	YKL068W	MAK16	P10962	306 aa	Predicted RBP	2.94	□□□□□ -1.94
NUP100	YKL068W	YJU3	P28321	313 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	KIP3	P53086	805 aa	Known RBP	2.94	□□□□□ -1.94
NUP100	YKL068W	HST2	P53686	357 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	GAL11	P19659	1081 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	CSE4	P36012	229 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	RIM21	P48565	533 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	ECM16	Q04217	1267 aa	Known RBP	2.94	□□□□□ -1.94
NUP100	YKL068W	ARG8	P18544	423 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	SIS2	P36024	562 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	FPK1	P53739	893 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	2.94	□□□□□ -1.94	not detected
NUP100	YKL068W	GYP5	Q12344	894 aa		2.94	□□□□□ -1.94
NUP100	YKL068W	GRX4	P32642	244 aa		2.93	□□□□□ -1.94
NUP100	YKL068W	SLI15	P38283	698 aa		2.93	□□□□□ -1.94
NUP100	YKL068W	KRI1	P42846	591 aa	Known RBP	2.93	□□□□□ -1.94
NUP100	YKL068W	POB3	Q04636	552 aa	Known RBP	2.93	□□□□□ -1.94
NUP100	YKL068W	FYV10	P40492	516 aa		2.93	□□□□□ -1.94
NUP100	YKL068W	MNL2	Q12205	849 aa		2.93	□□□□□ -1.94
NUP100	YKL068W	MMP1	Q12372	583 aa		2.93	□□□□□ -1.94
NUP100	YKL068W	MGE1	P38523	228 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	PPX1	P38698	397 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	YDL121C	Q07541	149 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	SAP155	P43612	1002 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	YJR142W	P47173	342 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	YOL036W	Q08206	761 aa		2.92	□□□□□ -1.94
NUP100	YKL068W	CDC53	Q12018	815 aa	Known RBP	2.92	□□□□□ -1.94
NUP100	YKL068W	PEP12	P32854	288 aa		2.91	□□□□□ -1.94
NUP100	YKL068W	MPE1	P35728	441 aa	Known RBP	2.91	□□□□□ -1.94
NUP100	YKL068W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	2.91	□□□□□ -1.94	not detected
NUP100	YKL068W	YJR107W	P47145	328 aa		2.91	□□□□□ -1.94
NUP100	YKL068W	DAN4	P47179	1161 aa		2.91	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 45.9 ms