RNA–Protein interactions for RNA: YJR042W

NUP85, Transcript of Subunit of the Nup84p subcomplex of the nuclear pore complex (NPC), yeast

Gene NUP85, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP85	YJR042W	EMP47	P43555	445 aa		4.65	□□□□□ -1.66
NUP85	YJR042W	RPS0B	P46654	252 aa	Known RBP	4.65	□□□□□ -1.66
NUP85	YJR042W	PNP1	Q05788	311 aa		4.65	□□□□□ -1.66
NUP85	YJR042W	RLP24	Q07915	199 aa	Known RBP	4.65	□□□□□ -1.66
NUP85	YJR042W	HIF1	Q12373	385 aa		4.65	□□□□□ -1.66
NUP85	YJR042W	YCF1	P39109	1515 aa	Known RBP	4.65	□□□□□ -1.66
NUP85	YJR042W	MIP1	P15801	1254 aa		4.65	□□□□□ -1.67
NUP85	YJR042W	VPS24	P36095	224 aa	Known RBP	4.65	□□□□□ -1.67
NUP85	YJR042W	ITC1	P53125	1264 aa		4.65	□□□□□ -1.67
NUP85	YJR042W	CDC53	Q12018	815 aa	Known RBP	4.65	□□□□□ -1.67
NUP85	YJR042W	MCM16	Q12262	181 aa		4.65	□□□□□ -1.67
NUP85	YJR042W	PHO4	P07270	312 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	DAL5	P15365	543 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	ISF1	P32488	338 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	MNN4	P36044	1178 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	PEX8	P53248	589 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	FOL1	P53848	824 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	TMA64	Q04600	565 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	NKP1	Q12493	238 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	NUP170	P38181	1502 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	IKI3	Q06706	1349 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	MLP2	P40457	1679 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	THS1	P04801	734 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	PIF1	P07271	859 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	TIM23	P32897	222 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	MGE1	P38523	228 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	YHR020W	P38708	688 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	ILV3	P39522	585 aa	Known RBP	4.64	□□□□□ -1.67
NUP85	YJR042W	ACF4	P47129	309 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	HUL5	P53119	910 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	YOR378W	Q08902	515 aa		4.64	□□□□□ -1.67
NUP85	YJR042W	SNQ2	P32568	1501 aa	Known RBP	4.63	□□□□□ -1.67
NUP85	YJR042W	TY2B-B	Q12491	1770 aa		4.63	□□□□□ -1.67
NUP85	YJR042W	KAR1	P11927	433 aa		4.63	□□□□□ -1.67
NUP85	YJR042W	TRX2	P22803	104 aa	Known RBP	4.63	□□□□□ -1.67
NUP85	YJR042W	KIC1	P38692	1080 aa		4.63	□□□□□ -1.67
NUP85	YJR042W	YJL049W	P47048	450 aa		4.63	□□□□□ -1.67
NUP85	YJR042W	COG4	Q06096	861 aa		4.63	□□□□□ -1.67
NUP85	YJR042W	PWP2	P25635	923 aa	Known RBP	4.62	□□□□□ -1.67
NUP85	YJR042W	PAF1	P38351	445 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	IES5	P40060	125 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	NUP82	P40368	713 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	DAK2	P43550	591 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	ACS2	P52910	683 aa	Known RBP	4.62	□□□□□ -1.67
NUP85	YJR042W	YGR161W-C	Q3E744	92 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	SUV3	P32580	737 aa		4.62	□□□□□ -1.67
NUP85	YJR042W	ESF1	Q06344	628 aa	Known RBP	4.62	□□□□□ -1.67
NUP85	YJR042W	RAD27	P26793	382 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	NOP2	P40991	618 aa	Known RBP	4.61	□□□□□ -1.67
NUP85	YJR042W	YGL081W	P53156	320 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	MET6	P05694	767 aa	Known RBP	4.61	□□□□□ -1.67
NUP85	YJR042W	GRX1	P25373	110 aa	Known RBP	4.61	□□□□□ -1.67
NUP85	YJR042W	CLB5	P30283	435 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	GUT1	P32190	709 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	RPT1	P33299	467 aa	Known RBP	4.61	□□□□□ -1.67
NUP85	YJR042W	KTR2	P33550	425 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	HOS4	P40480	1083 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	YOR238W	Q08634	303 aa		4.61	□□□□□ -1.67
NUP85	YJR042W	SPP41	P38904	1435 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	SRS2	P12954	1174 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	RPT2	P40327	437 aa	Known RBP	4.6	□□□□□ -1.67
NUP85	YJR042W	GDE1	Q02979	1223 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	YMR196W	Q04336	1088 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	VMA1	P17255	1071 aa	Known RBP	4.6	□□□□□ -1.67
NUP85	YJR042W	GRX7	P38068	203 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	APL6	P46682	809 aa		4.6	□□□□□ -1.67
NUP85	YJR042W	NAF1	P53919	492 aa	Known RBP	4.6	□□□□□ -1.67
NUP85	YJR042W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
NUP85	YJR042W	TY1B-H	O13535	1793 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-DR5	P0C2I2	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-DR6	P0C2I3	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-LR2	P0C2I5	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-PR2	P0C2J0	1756 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-JR1	P47098	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-ML2	Q03434	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-ER1	Q03612	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-ML1	Q04711	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-GR2	Q12269	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-OL	Q12273	1755 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	TY1B-PL	Q12414	1755 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	STH1	P32597	1359 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	YNR029C	P53729	429 aa	Known RBP	4.59	□□□□□ -1.67
NUP85	YJR042W	TGL2	P54857	326 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	YPR109W	Q06104	294 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	YOL036W	Q08206	761 aa		4.59	□□□□□ -1.67
NUP85	YJR042W	PHO87	P25360	923 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	YKL069W	P36088	180 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	RPS26A	P39938	119 aa	Known RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	RPS26B	P39939	119 aa	Known RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	VPS27	P40343	622 aa	Known RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	MAD1	P40957	749 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	YJR120W	P47157	116 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	WRS1	Q12109	432 aa	Known RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	SNU66	Q12420	587 aa	Predicted RBP	4.58	□□□□□ -1.68
NUP85	YJR042W	TY1B-BR	Q12193	1756 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	TY1B-GR3	Q12316	1755 aa		4.58	□□□□□ -1.68
NUP85	YJR042W	TY1B-OR	Q92393	1755 aa		4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 40.6 ms