RNA–Protein interactions for RNA: YHR120W

MSH1, Transcript of DNA-binding protein of the mitochondria, yeastyeast

Gene MSH1, Length 2,880 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
MSH1YHR120W VPS27P40343 622 aaKnown RBP6.29□□□□□ -1.4
MSH1YHR120W SRT1Q03175 343 aa6.29□□□□□ -1.4
MSH1YHR120W YLR271WQ06152 274 aa6.29□□□□□ -1.4
MSH1YHR120W HAT1Q12341 374 aa6.29□□□□□ -1.4
MSH1YHR120W SWI1P09547 1314 aa6.29□□□□□ -1.4
MSH1YHR120W YRB30P53107 440 aaPredicted RBP6.28□□□□□ -1.4
MSH1YHR120W DNM1P54861 757 aa6.28□□□□□ -1.4
MSH1YHR120W UBP16Q02863 499 aa6.28□□□□□ -1.4
MSH1YHR120W YDR306CQ06640 478 aa6.28□□□□□ -1.4
MSH1YHR120W SUI2P20459 304 aaKnown RBP6.28□□□□□ -1.4
MSH1YHR120W SIT4P20604 311 aa6.28□□□□□ -1.4
MSH1YHR120W ICL1P28240 557 aaPredicted RBP6.27□□□□□ -1.41
MSH1YHR120W CST6P40535 587 aa6.27□□□□□ -1.41
MSH1YHR120W YJR008WP47085 338 aa6.27□□□□□ -1.41
MSH1YHR120W FCP1Q03254 732 aa6.26□□□□□ -1.41
MSH1YHR120W PKH1Q03407 766 aa6.26□□□□□ -1.41
MSH1YHR120W SYF1Q04048 859 aaPredicted RBP6.26□□□□□ -1.41
MSH1YHR120W TOP1P04786 769 aa6.26□□□□□ -1.41
MSH1YHR120W FPK1P53739 893 aa6.26□□□□□ -1.41
MSH1YHR120W MRP7P12687 371 aa6.25□□□□□ -1.41
MSH1YHR120W FRD1P32614 470 aaKnown RBP6.25□□□□□ -1.41
MSH1YHR120W RPN1P38764 993 aaKnown RBP6.25□□□□□ -1.41
MSH1YHR120W DIP2Q12220 943 aaPredicted RBP6.25□□□□□ -1.41
MSH1YHR120W NUP133P36161 1157 aa6.25□□□□□ -1.41
MSH1YHR120W GRX6Q12438 231 aa6.25□□□□□ -1.41
MSH1YHR120W SAS4Q04003 481 aa6.24□□□□□ -1.41
MSH1YHR120W YKU70P32807 602 aa6.24□□□□□ -1.41
MSH1YHR120W SHC1P39000 512 aa6.24□□□□□ -1.41
MSH1YHR120W YGR122WP53272 402 aa6.24□□□□□ -1.41
MSH1YHR120W RPS9BP05755 195 aaKnown RBP6.24□□□□□ -1.41
MSH1YHR120W ATG20Q07528 640 aa6.24□□□□□ -1.41
MSH1YHR120W SET1P38827 1080 aaKnown RBP6.23□□□□□ -1.41
MSH1YHR120W RVB2Q12464 471 aaKnown RBP6.23□□□□□ -1.41
MSH1YHR120W HKR1P41809 1802 aa6.22□□□□□ -1.41
MSH1YHR120W SLI15P38283 698 aa6.22□□□□□ -1.41
MSH1YHR120W ITC1P53125 1264 aa6.22□□□□□ -1.41
MSH1YHR120W SAC3P46674 1301 aa6.21□□□□□ -1.41
MSH1YHR120W SSA4P22202 642 aaKnown RBP6.21□□□□□ -1.41
MSH1YHR120W RET1P22276 1149 aaKnown RBP6.21□□□□□ -1.41
MSH1YHR120W RAD24P32641 659 aa6.21□□□□□ -1.41
MSH1YHR120W PUS5Q06244 254 aa6.21□□□□□ -1.41
MSH1YHR120W SWC3P31376 625 aa6.2□□□□□ -1.42
MSH1YHR120W FIG2P25653 1609 aa6.2□□□□□ -1.42
MSH1YHR120W FAS2P19097 1887 aaKnown RBP6.2□□□□□ -1.42
MSH1YHR120W YPP1P46951 817 aa6.2□□□□□ -1.42
MSH1YHR120W PEX21P50091 288 aa6.2□□□□□ -1.42
MSH1YHR120W PSH1Q12161 406 aa6.2□□□□□ -1.42
MSH1YHR120W DPH6Q12429 685 aa6.2□□□□□ -1.42
MSH1YHR120W YLR278CQ05854 1341 aa6.2□□□□□ -1.42
MSH1YHR120W THS1P04801 734 aaKnown RBP6.2□□□□□ -1.42
MSH1YHR120W ICP55P40051 511 aa6.2□□□□□ -1.42
MSH1YHR120W YIR014WP40570 242 aa6.2□□□□□ -1.42
MSH1YHR120W SET4P42948 560 aa6.2□□□□□ -1.42
MSH1YHR120W DPL1Q05567 589 aa6.2□□□□□ -1.42
MSH1YHR120W MAK21Q12176 1025 aaKnown RBP6.2□□□□□ -1.42
MSH1YHR120W NAB6Q03735 1134 aaKnown RBP RIP-Chip data6.19□□□□□ -1.42not detected
MSH1YHR120W NOP8Q08287 484 aaPredicted RBP6.19□□□□□ -1.42
MSH1YHR120W TRP5P00931 707 aaKnown RBP6.19□□□□□ -1.42
MSH1YHR120W RPC31P17890 251 aa6.19□□□□□ -1.42
MSH1YHR120W UBP12P39538 1254 aa6.19□□□□□ -1.42
MSH1YHR120W CSI1Q04368 295 aa6.19□□□□□ -1.42
MSH1YHR120W KRE2P27809 442 aa6.18□□□□□ -1.42
MSH1YHR120W BOI2P39969 1040 aa6.18□□□□□ -1.42
MSH1YHR120W MTC5Q03897 1148 aa6.18□□□□□ -1.42
MSH1YHR120W IME2P32581 645 aa6.18□□□□□ -1.42
MSH1YHR120W RTG2P32608 588 aaKnown RBP6.18□□□□□ -1.42
MSH1YHR120W HXT10P43581 546 aa6.18□□□□□ -1.42
MSH1YHR120W OPY1P38271 328 aa6.17□□□□□ -1.42
MSH1YHR120W SPL2P38839 148 aa6.17□□□□□ -1.42
MSH1YHR120W RPT4P53549 437 aaKnown RBP6.17□□□□□ -1.42
MSH1YHR120W THI3Q07471 609 aa6.17□□□□□ -1.42
MSH1YHR120W MSM1P22438 575 aa6.17□□□□□ -1.42
MSH1YHR120W MGM1P32266 881 aa6.17□□□□□ -1.42
MSH1YHR120W NGR1P32831 672 aaKnown RBP6.17□□□□□ -1.42
MSH1YHR120W GAP1P19145 602 aaPredicted RBP6.16□□□□□ -1.42
MSH1YHR120W FPR3P38911 411 aaKnown RBP6.16□□□□□ -1.42
MSH1YHR120W YIL092WP40497 633 aa6.16□□□□□ -1.42
MSH1YHR120W UBX2Q04228 584 aa6.16□□□□□ -1.42
MSH1YHR120W GAS5Q08193 484 aa6.16□□□□□ -1.42
MSH1YHR120W RPS19AP07280 144 aaKnown RBP6.16□□□□□ -1.42
MSH1YHR120W RPS19BP07281 144 aaPredicted RBP6.16□□□□□ -1.42
MSH1YHR120W FET4P40988 552 aa6.16□□□□□ -1.42
MSH1YHR120W DAL5P15365 543 aa6.15□□□□□ -1.42
MSH1YHR120W GLC3P32775 704 aa6.15□□□□□ -1.42
MSH1YHR120W TIF4632P39936 914 aaKnown RBP6.15□□□□□ -1.42
MSH1YHR120W RRD1P40454 393 aaKnown RBP6.15□□□□□ -1.43
MSH1YHR120W TIM50Q02776 476 aa6.15□□□□□ -1.43
MSH1YHR120W DUR1,2P32528 1835 aaKnown RBP6.14□□□□□ -1.43
MSH1YHR120W SUP35P05453 685 aaKnown RBP6.14□□□□□ -1.43
MSH1YHR120W TRM44Q02648 567 aaKnown RBP6.14□□□□□ -1.43
MSH1YHR120W RRG1Q12167 365 aaPredicted RBP6.14□□□□□ -1.43
MSH1YHR120W AFG2P32794 780 aa6.14□□□□□ -1.43
MSH1YHR120W SNU66Q12420 587 aaPredicted RBP6.14□□□□□ -1.43
MSH1YHR120W STV1P37296 890 aa6.13□□□□□ -1.43
MSH1YHR120W SRC1Q03707 834 aa6.13□□□□□ -1.43
MSH1YHR120W ADR1P07248 1323 aa6.13□□□□□ -1.43
MSH1YHR120W FLO11P08640 1367 aa6.13□□□□□ -1.43
MSH1YHR120W LCB1P25045 558 aaKnown RBP6.13□□□□□ -1.43
MSH1YHR120W FUN12P39730 1002 aaKnown RBP6.13□□□□□ -1.43
MSH1YHR120W GSM1P42950 618 aa6.13□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms