RNA–Protein interactions for RNA: YHR027C

RPN1, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeastyeast

Gene RPN1, Length 2,982 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN1YHR027C TY1B-DR1Q03855 1755 aa3.55□□□□□ -1.84
RPN1YHR027C TY2B-DR3Q07791 1770 aaKnown RBP3.55□□□□□ -1.84
RPN1YHR027C TY2B-OR1Q12113 1770 aa3.55□□□□□ -1.84
RPN1YHR027C TY2B-DR1Q12472 1770 aa3.55□□□□□ -1.84
RPN1YHR027C TY2B-BQ12491 1770 aa3.55□□□□□ -1.84
RPN1YHR027C TY2B-OR2Q12501 1770 aa3.55□□□□□ -1.84
RPN1YHR027C PDR12Q02785 1511 aa3.55□□□□□ -1.84
RPN1YHR027C RTC1Q08281 1341 aa3.55□□□□□ -1.84
RPN1YHR027C MRPS28P21771 286 aa3.55□□□□□ -1.84
RPN1YHR027C HSP104P31539 908 aaKnown RBP3.55□□□□□ -1.84
RPN1YHR027C RME1P32338 300 aaKnown RBP3.55□□□□□ -1.84
RPN1YHR027C BEM4P39011 633 aa3.55□□□□□ -1.84
RPN1YHR027C HST1P53685 503 aa3.55□□□□□ -1.84
RPN1YHR027C SPO19Q03029 223 aa3.55□□□□□ -1.84
RPN1YHR027C DOP1Q03921 1698 aa3.55□□□□□ -1.84
RPN1YHR027C RPL5P26321 297 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C YIL092WP40497 633 aa3.54□□□□□ -1.84
RPN1YHR027C CTK3P46963 296 aaPredicted RBP3.54□□□□□ -1.84
RPN1YHR027C YJR142WP47173 342 aa3.54□□□□□ -1.84
RPN1YHR027C HST2P53686 357 aa3.54□□□□□ -1.84
RPN1YHR027C RCF1Q03713 159 aa3.54□□□□□ -1.84
RPN1YHR027C RRB1Q04225 511 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C NKP1Q12493 238 aa3.54□□□□□ -1.84
RPN1YHR027C GCD6P32501 712 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C UBP14P38237 781 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C NPR3P38742 1146 aa3.54□□□□□ -1.84
RPN1YHR027C HYR1P40581 163 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C YRB1P41920 201 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C ALD2P47771 506 aa3.54□□□□□ -1.84
RPN1YHR027C ADE12P80210 433 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C ATG26Q06321 1198 aa3.54□□□□□ -1.84
RPN1YHR027C GLE1Q12315 538 aa3.54□□□□□ -1.84
RPN1YHR027C DUR1,2P32528 1835 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C RRP5Q05022 1729 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C KEX1P09620 729 aa3.54□□□□□ -1.84
RPN1YHR027C RFC5P38251 354 aa3.54□□□□□ -1.84
RPN1YHR027C EXO84P38261 753 aa3.54□□□□□ -1.84
RPN1YHR027C TOM71P38825 639 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C SEC26P41810 973 aaKnown RBP3.54□□□□□ -1.84
RPN1YHR027C SSL2Q00578 843 aa3.54□□□□□ -1.84
RPN1YHR027C YDR338CQ05497 695 aa3.54□□□□□ -1.84
RPN1YHR027C HRQ1Q05549 1077 aa3.54□□□□□ -1.84
RPN1YHR027C DRS2P39524 1355 aa3.53□□□□□ -1.84
RPN1YHR027C RPG1P38249 964 aaKnown RBP3.53□□□□□ -1.84
RPN1YHR027C IST1P53843 298 aaPredicted RBP3.53□□□□□ -1.84
RPN1YHR027C CUS1Q02554 436 aaPredicted RBP3.53□□□□□ -1.84
RPN1YHR027C MFT1P33441 392 aaKnown RBP3.53□□□□□ -1.84
RPN1YHR027C SKI2P35207 1287 aaKnown RBP RIP-Chip data3.53□□□□□ -1.84not detected
RPN1YHR027C MRPL10P36520 322 aa3.53□□□□□ -1.84
RPN1YHR027C RGD1P38339 666 aa3.53□□□□□ -1.84
RPN1YHR027C BRL1P38770 471 aa3.53□□□□□ -1.84
RPN1YHR027C YFR006WP43590 535 aa3.53□□□□□ -1.84
RPN1YHR027C CWH41P53008 833 aa3.53□□□□□ -1.84
RPN1YHR027C ORM1P53224 222 aa3.53□□□□□ -1.84
RPN1YHR027C VMS1Q04311 632 aaKnown RBP3.53□□□□□ -1.84
RPN1YHR027C ABP140Q08641 628 aaKnown RBP3.53□□□□□ -1.84
RPN1YHR027C MSB4Q12317 492 aa3.53□□□□□ -1.84
RPN1YHR027C CHC1P22137 1653 aaKnown RBP3.53□□□□□ -1.84
RPN1YHR027C YRF1-4O13559 1382 aa3.52□□□□□ -1.85
RPN1YHR027C DAL5P15365 543 aa3.52□□□□□ -1.85
RPN1YHR027C THR4P16120 514 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C CDC3P32457 520 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C ERC1P38767 581 aa3.52□□□□□ -1.85
RPN1YHR027C SPR3P41901 512 aa3.52□□□□□ -1.85
RPN1YHR027C SHE4P51534 789 aa3.52□□□□□ -1.85
RPN1YHR027C TIM11P81449 96 aaPredicted RBP3.52□□□□□ -1.85
RPN1YHR027C COG4Q06096 861 aa3.52□□□□□ -1.85
RPN1YHR027C ARD1P07347 238 aaPredicted RBP3.52□□□□□ -1.85
RPN1YHR027C TRL1P09880 827 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C TAF13P11747 167 aa3.52□□□□□ -1.85
RPN1YHR027C EFB1P32471 206 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C KAR9P32526 644 aa3.52□□□□□ -1.85
RPN1YHR027C TIF3P34167 436 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C HEL1P36113 551 aa3.52□□□□□ -1.85
RPN1YHR027C TAF1P46677 1066 aa3.52□□□□□ -1.85
RPN1YHR027C RTF1P53064 558 aa3.52□□□□□ -1.85
RPN1YHR027C PUF6Q04373 656 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C SLX4Q12098 748 aa3.52□□□□□ -1.85
RPN1YHR027C CLF1Q12309 687 aaPredicted RBP3.52□□□□□ -1.85
RPN1YHR027C MLP1Q02455 1875 aaKnown RBP3.52□□□□□ -1.85
RPN1YHR027C YEF3P16521 1044 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C PET123P17558 318 aa3.51□□□□□ -1.85
RPN1YHR027C STE11P23561 717 aa3.51□□□□□ -1.85
RPN1YHR027C CDC10P25342 322 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C SRL3P36167 246 aa3.51□□□□□ -1.85
RPN1YHR027C RSM25P40496 264 aa3.51□□□□□ -1.85
RPN1YHR027C VID28P40547 921 aa3.51□□□□□ -1.85
RPN1YHR027C YIR042CP40586 236 aa3.51□□□□□ -1.85
RPN1YHR027C BUD27P43573 796 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
RPN1YHR027C SUM1P46676 1062 aa3.51□□□□□ -1.85
RPN1YHR027C FMP30Q02883 468 aa3.51□□□□□ -1.85
RPN1YHR027C YML119WQ03208 357 aa3.51□□□□□ -1.85
RPN1YHR027C KRE28Q04431 385 aa3.51□□□□□ -1.85
RPN1YHR027C YDR341CQ05506 607 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C UTP4Q06679 776 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C CMS1Q07897 291 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C ATG9Q12142 997 aa3.51□□□□□ -1.85
RPN1YHR027C LYS2P07702 1392 aa3.51□□□□□ -1.85
RPN1YHR027C RPO21P04050 1733 aaKnown RBP3.51□□□□□ -1.85
RPN1YHR027C CSE1P33307 960 aa3.51□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 33.8 ms