RNA–Protein interactions for RNA: YDR254W

CHL4, Transcript of Outer kinetochore protein required for chromosome stability, yeast

Gene CHL4, Length 1,377 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CHL4	YDR254W	STE6	P12866	1290 aa		7.59	□□□□□ -1.19
CHL4	YDR254W	BIO2	P32451	375 aa		7.59	□□□□□ -1.19
CHL4	YDR254W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	7.59	□□□□□ -1.19	not detected
CHL4	YDR254W	YPR084W	Q06821	456 aa		7.59	□□□□□ -1.2
CHL4	YDR254W	GUT2	P32191	649 aa		7.58	□□□□□ -1.2
CHL4	YDR254W	BIM1	P40013	344 aa		7.58	□□□□□ -1.2
CHL4	YDR254W	ATG32	P40458	529 aa		7.58	□□□□□ -1.2
CHL4	YDR254W	YJL007C	P47080	104 aa		7.58	□□□□□ -1.2
CHL4	YDR254W	YAF9	P53930	226 aa		7.58	□□□□□ -1.2
CHL4	YDR254W	PUS1	Q12211	544 aa	Known RBP	7.58	□□□□□ -1.2
CHL4	YDR254W	HEM3	P28789	327 aa		7.57	□□□□□ -1.2
CHL4	YDR254W	FPR4	Q06205	392 aa	Predicted RBP	7.57	□□□□□ -1.2
CHL4	YDR254W	CDC19	P00549	500 aa	Known RBP	7.55	□□□□□ -1.2
CHL4	YDR254W	MAK16	P10962	306 aa	Predicted RBP	7.55	□□□□□ -1.2
CHL4	YDR254W	YBL036C	P38197	257 aa		7.55	□□□□□ -1.2
CHL4	YDR254W	VTC4	P47075	721 aa		7.55	□□□□□ -1.2
CHL4	YDR254W	NAM8	Q00539	523 aa	Known RBP	7.55	□□□□□ -1.2
CHL4	YDR254W	ISU1	Q03020	165 aa		7.55	□□□□□ -1.2
CHL4	YDR254W	ATG20	Q07528	640 aa		7.54	□□□□□ -1.2
CHL4	YDR254W	TOA1	P32773	286 aa		7.53	□□□□□ -1.2
CHL4	YDR254W	NMD2	P38798	1089 aa	Known RBP	7.53	□□□□□ -1.2
CHL4	YDR254W	ALD4	P46367	519 aa	Known RBP	7.53	□□□□□ -1.2
CHL4	YDR254W	JJJ3	P47138	172 aa		7.53	□□□□□ -1.2
CHL4	YDR254W	PHM7	Q12252	991 aa		7.53	□□□□□ -1.2
CHL4	YDR254W	RPP2B	P02400	110 aa	Known RBP	7.52	□□□□□ -1.21
CHL4	YDR254W	SSA4	P22202	642 aa	Known RBP	7.52	□□□□□ -1.21
CHL4	YDR254W	UBX5	Q06682	500 aa		7.52	□□□□□ -1.21
CHL4	YDR254W	HIF1	Q12373	385 aa		7.52	□□□□□ -1.21
CHL4	YDR254W	DAL1	P32375	460 aa		7.51	□□□□□ -1.21
CHL4	YDR254W	DLD3	P39976	496 aa	Known RBP	7.51	□□□□□ -1.21
CHL4	YDR254W	ZDS1	P50111	915 aa	Known RBP	7.51	□□□□□ -1.21
CHL4	YDR254W	NAF1	P53919	492 aa	Known RBP	7.51	□□□□□ -1.21
CHL4	YDR254W	STE20	Q03497	939 aa	Known RBP	7.51	□□□□□ -1.21
CHL4	YDR254W	MDJ1	P35191	511 aa		7.5	□□□□□ -1.21
CHL4	YDR254W	SEN54	Q02825	467 aa	Predicted RBP	7.5	□□□□□ -1.21
CHL4	YDR254W	YDJ1	P25491	409 aa	Known RBP	7.49	□□□□□ -1.21
CHL4	YDR254W	LSB3	P43603	459 aa	Known RBP	7.49	□□□□□ -1.21
CHL4	YDR254W	YNL108C	P53929	270 aa		7.49	□□□□□ -1.21
CHL4	YDR254W	TIF1	P10081	395 aa	Known RBP	7.48	□□□□□ -1.21
CHL4	YDR254W	CDC3	P32457	520 aa	Known RBP	7.48	□□□□□ -1.21
CHL4	YDR254W	TOM20	P35180	183 aa		7.48	□□□□□ -1.21
CHL4	YDR254W	RPL34A	P87262	121 aa	Predicted RBP	7.48	□□□□□ -1.21
CHL4	YDR254W	KIP3	P53086	805 aa	Known RBP	7.47	□□□□□ -1.21
CHL4	YDR254W	CWC22	P53333	577 aa	Known RBP	7.47	□□□□□ -1.21
CHL4	YDR254W	CUZ1	P53899	274 aa		7.47	□□□□□ -1.21
CHL4	YDR254W	FRA1	Q07825	749 aa		7.47	□□□□□ -1.21
CHL4	YDR254W	CSE4	P36012	229 aa		7.46	□□□□□ -1.21
CHL4	YDR254W	EBP2	P36049	427 aa	Known RBP	7.46	□□□□□ -1.21
CHL4	YDR254W	NNF1	P47149	201 aa		7.46	□□□□□ -1.21
CHL4	YDR254W	SUP45	P12385	437 aa	Known RBP	7.46	□□□□□ -1.22
CHL4	YDR254W	NSG2	P53898	299 aa		7.46	□□□□□ -1.22
CHL4	YDR254W	ENO2	P00925	437 aa	Known RBP	7.45	□□□□□ -1.22
CHL4	YDR254W	CEM1	P39525	442 aa		7.45	□□□□□ -1.22
CHL4	YDR254W	THI72	Q08579	599 aa		7.45	□□□□□ -1.22
CHL4	YDR254W	TY4A-J	P47023	414 aa		7.44	□□□□□ -1.22
CHL4	YDR254W	AI1	P03875	834 aa		7.43	□□□□□ -1.22
CHL4	YDR254W	UBP15	P50101	1230 aa		7.41	□□□□□ -1.22
CHL4	YDR254W	BRE1	Q07457	700 aa	Known RBP	7.41	□□□□□ -1.22
CHL4	YDR254W	WTM2	Q12206	467 aa		7.41	□□□□□ -1.22
CHL4	YDR254W	RTG2	P32608	588 aa	Known RBP	7.4	□□□□□ -1.22
CHL4	YDR254W	AIM21	P40563	679 aa		7.4	□□□□□ -1.22
CHL4	YDR254W	MSN5	P52918	1224 aa		7.4	□□□□□ -1.22
CHL4	YDR254W	RNH70	P53331	553 aa		7.4	□□□□□ -1.22
CHL4	YDR254W	YMR265C	Q03508	461 aa	Known RBP	7.4	□□□□□ -1.22
CHL4	YDR254W	DAT1	P13483	248 aa	Known RBP	7.39	□□□□□ -1.23
CHL4	YDR254W	GAL11	P19659	1081 aa		7.39	□□□□□ -1.23
CHL4	YDR254W	RRP14	P36080	434 aa	Known RBP	7.39	□□□□□ -1.23
CHL4	YDR254W	ISW1	P38144	1129 aa		7.39	□□□□□ -1.23
CHL4	YDR254W	ISR1	Q06098	443 aa	Known RBP	7.39	□□□□□ -1.23
CHL4	YDR254W	RLP24	Q07915	199 aa	Known RBP	7.39	□□□□□ -1.23
CHL4	YDR254W	ENO1	P00924	437 aa	Known RBP	7.38	□□□□□ -1.23
CHL4	YDR254W	DIT1	P21623	536 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	TSR4	P25040	408 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	PMC1	P38929	1173 aa	Predicted RBP	7.38	□□□□□ -1.23
CHL4	YDR254W	RPT2	P40327	437 aa	Known RBP	7.38	□□□□□ -1.23
CHL4	YDR254W	RPL34B	P40525	121 aa	Known RBP	7.38	□□□□□ -1.23
CHL4	YDR254W	YFL066C	P43538	392 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	EMP47	P43555	445 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	RIM21	P48565	533 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	MRX10	Q05648	414 aa		7.38	□□□□□ -1.23
CHL4	YDR254W	CPS1	P27614	576 aa		7.37	□□□□□ -1.23
CHL4	YDR254W	SPT5	P27692	1063 aa	Known RBP	7.37	□□□□□ -1.23
CHL4	YDR254W	ISF1	P32488	338 aa		7.37	□□□□□ -1.23
CHL4	YDR254W	SSN3	P39073	555 aa		7.37	□□□□□ -1.23
CHL4	YDR254W	MCM16	Q12262	181 aa		7.37	□□□□□ -1.23
CHL4	YDR254W	HAT1	Q12341	374 aa		7.37	□□□□□ -1.23
CHL4	YDR254W	SPT2	P06843	333 aa	Predicted RBP	7.36	□□□□□ -1.23
CHL4	YDR254W	UTR2	P32623	467 aa		7.36	□□□□□ -1.23
CHL4	YDR254W	RPS0A	P32905	252 aa	Known RBP	7.36	□□□□□ -1.23
CHL4	YDR254W	FPR3	P38911	411 aa	Known RBP	7.36	□□□□□ -1.23
CHL4	YDR254W	TPM2	P40414	161 aa		7.36	□□□□□ -1.23
CHL4	YDR254W	ADE12	P80210	433 aa	Known RBP	7.36	□□□□□ -1.23
CHL4	YDR254W	SYT1	Q06836	1226 aa		7.36	□□□□□ -1.23
CHL4	YDR254W	RDS2	P19541	446 aa	Known RBP	7.35	□□□□□ -1.23
CHL4	YDR254W	SLA1	P32790	1244 aa		7.35	□□□□□ -1.23
CHL4	YDR254W	KRE33	P53914	1056 aa	Known RBP	7.35	□□□□□ -1.23
CHL4	YDR254W	RAD2	P07276	1031 aa		7.34	□□□□□ -1.23
CHL4	YDR254W	TTI1	P36097	1038 aa		7.34	□□□□□ -1.23
CHL4	YDR254W	TBS1	P38114	1094 aa		7.34	□□□□□ -1.23
CHL4	YDR254W	PPG1	P32838	368 aa		7.33	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 7.2 ms