RNA–Protein interactions for RNA: YDR052C

DBF4, Transcript of Regulatory subunit of Cdc7p-Dbf4p kinase complex, yeast

Gene DBF4, Length 2,115 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DBF4	YDR052C	ALD2	P47771	506 aa		5.9	□□□□□ -1.47
DBF4	YDR052C	SSL2	Q00578	843 aa		5.9	□□□□□ -1.47
DBF4	YDR052C	RRB1	Q04225	511 aa	Known RBP	5.9	□□□□□ -1.47
DBF4	YDR052C	TAF13	P11747	167 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	MPE1	P35728	441 aa	Known RBP	5.89	□□□□□ -1.47
DBF4	YDR052C	UBP14	P38237	781 aa	Known RBP	5.89	□□□□□ -1.47
DBF4	YDR052C	LSO1	Q3E827	93 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	RPO31	P04051	1460 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	RPL5	P26321	297 aa	Known RBP	5.89	□□□□□ -1.47
DBF4	YDR052C	MRPL10	P36520	322 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	BRN1	P38170	754 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	EXO84	P38261	753 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	MVP1	P40959	511 aa	Known RBP	5.89	□□□□□ -1.47
DBF4	YDR052C	NKP1	Q12493	238 aa		5.89	□□□□□ -1.47
DBF4	YDR052C	DNF2	Q12675	1612 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	RTC1	Q08281	1341 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	ARO1	P08566	1588 aa	Known RBP	5.88	□□□□□ -1.47
DBF4	YDR052C	MRPS28	P21771	286 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	APC11	Q12157	165 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	RKR1	Q04781	1562 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	AUS1	Q08409	1394 aa		5.88	□□□□□ -1.47
DBF4	YDR052C	CDC3	P32457	520 aa	Known RBP	5.87	□□□□□ -1.47
DBF4	YDR052C	CTK3	P46963	296 aa	Predicted RBP	5.87	□□□□□ -1.47
DBF4	YDR052C	UTP4	Q06679	776 aa	Known RBP	5.87	□□□□□ -1.47
DBF4	YDR052C	ATG2	P53855	1592 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	SWI6	P09959	803 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	DID4	P36108	232 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	HEL1	P36113	551 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	RGD1	P38339	666 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.87	□□□□□ -1.47	not detected
DBF4	YDR052C	SUM1	P46676	1062 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	CWH41	P53008	833 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	HST1	P53685	503 aa		5.87	□□□□□ -1.47
DBF4	YDR052C	IST1	P53843	298 aa	Predicted RBP	5.87	□□□□□ -1.47
DBF4	YDR052C	STE20	Q03497	939 aa	Known RBP	5.87	□□□□□ -1.47
DBF4	YDR052C	RTF1	P53064	558 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	HST2	P53686	357 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	KRE28	Q04431	385 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	RRP9	Q06506	573 aa	Known RBP	5.86	□□□□□ -1.47
DBF4	YDR052C	RME1	P32338	300 aa	Known RBP	5.86	□□□□□ -1.47
DBF4	YDR052C	NPR3	P38742	1146 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	ERC1	P38767	581 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	RSM25	P40496	264 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	YIL092W	P40497	633 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	SHE4	P51534	789 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	ADE12	P80210	433 aa	Known RBP	5.86	□□□□□ -1.47
DBF4	YDR052C	INP2	Q03824	705 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	YDR338C	Q05497	695 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	ATG26	Q06321	1198 aa		5.86	□□□□□ -1.47
DBF4	YDR052C	CMS1	Q07897	291 aa	Known RBP	5.86	□□□□□ -1.47
DBF4	YDR052C	PSK1	P31374	1356 aa		5.85	□□□□□ -1.47
DBF4	YDR052C	TY3B-I	Q7LHG5	1498 aa	Known RBP	5.85	□□□□□ -1.47
DBF4	YDR052C	CDC37	P06101	506 aa	Known RBP	5.85	□□□□□ -1.47
DBF4	YDR052C	SEC66	P33754	206 aa		5.85	□□□□□ -1.47
DBF4	YDR052C	TIF3	P34167	436 aa	Known RBP	5.85	□□□□□ -1.47
DBF4	YDR052C	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	5.85	□□□□□ -1.47	not detected
DBF4	YDR052C	VPS20	Q04272	221 aa		5.85	□□□□□ -1.47
DBF4	YDR052C	HRQ1	Q05549	1077 aa		5.85	□□□□□ -1.47
DBF4	YDR052C	SES1	P07284	462 aa	Known RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	KAR9	P32526	644 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	RRP1	P35178	278 aa	Predicted RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	YFR006W	P43590	535 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	CCM1	P48237	864 aa	Predicted RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	YML119W	Q03208	357 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	LCB5	Q06147	687 aa	Known RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	CLF1	Q12309	687 aa	Predicted RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	WHI5	Q12416	295 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	PDR18	P53756	1333 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	KEX1	P09620	729 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	CDC60	P26637	1090 aa	Known RBP	5.84	□□□□□ -1.47
DBF4	YDR052C	ULS1	Q08562	1619 aa		5.84	□□□□□ -1.47
DBF4	YDR052C	THR4	P16120	514 aa	Known RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	ALD4	P46367	519 aa	Known RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.83	□□□□□ -1.48	not detected
DBF4	YDR052C	CEF1	Q03654	590 aa	Predicted RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	RIX7	Q07844	837 aa	Known RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	IOC2	Q12072	812 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	SLX4	Q12098	748 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	SNF2	P22082	1703 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	PET123	P17558	318 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	YEL1	P34225	687 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	YIR042C	P40586	236 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	TPO2	P53283	614 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	SRC1	Q03707	834 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	PUF6	Q04373	656 aa	Known RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	YDR341C	Q05506	607 aa	Known RBP	5.83	□□□□□ -1.48
DBF4	YDR052C	COG4	Q06096	861 aa		5.83	□□□□□ -1.48
DBF4	YDR052C	ARD1	P07347	238 aa	Predicted RBP	5.82	□□□□□ -1.48
DBF4	YDR052C	TAF1	P46677	1066 aa		5.82	□□□□□ -1.48
DBF4	YDR052C	HAP1	P0CE41	1502 aa		5.82	□□□□□ -1.48
DBF4	YDR052C	KRS1	P15180	591 aa	Known RBP	5.81	□□□□□ -1.48
DBF4	YDR052C	SEC20	P28791	383 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	DLD1	P32891	587 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	PTH2	P34222	208 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	SHC1	P39000	512 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	ORM1	P53224	222 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	CUS1	Q02554	436 aa	Predicted RBP	5.81	□□□□□ -1.48
DBF4	YDR052C	CTI6	Q08923	506 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	SMC6	Q12749	1114 aa		5.81	□□□□□ -1.48
DBF4	YDR052C	TRK1	P12685	1235 aa		5.81	□□□□□ -1.48

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms