RNA–Protein interactions for RNA: YDL185W

VMA1, Transcript of Subunit A of the V1 peripheral membrane domain of V-ATPase, yeast

Gene VMA1, Length 3,216 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA1	YDL185W	MAK21	Q12176	1025 aa	Known RBP	4.67	□□□□□ -1.66
VMA1	YDL185W	MBR1	P23493	339 aa		4.66	□□□□□ -1.66
VMA1	YDL185W	PSE1	P32337	1089 aa	Known RBP	4.66	□□□□□ -1.66
VMA1	YDL185W	ECM16	Q04217	1267 aa	Known RBP	4.66	□□□□□ -1.66
VMA1	YDL185W	LYS2	P07702	1392 aa		4.66	□□□□□ -1.66
VMA1	YDL185W	HO	P09932	586 aa		4.66	□□□□□ -1.66
VMA1	YDL185W	TAF8	Q03750	510 aa		4.66	□□□□□ -1.66
VMA1	YDL185W	TLG2	Q08144	397 aa		4.66	□□□□□ -1.66
VMA1	YDL185W	BIK1	P11709	440 aa		4.65	□□□□□ -1.66
VMA1	YDL185W	GDT1	P38301	280 aa	Predicted RBP	4.65	□□□□□ -1.66
VMA1	YDL185W	DOS2	P54858	310 aa		4.65	□□□□□ -1.66
VMA1	YDL185W	PRP31	P49704	494 aa	Predicted RBP	4.65	□□□□□ -1.67
VMA1	YDL185W	MSB4	Q12317	492 aa		4.65	□□□□□ -1.67
VMA1	YDL185W	GYL1	Q04322	720 aa		4.65	□□□□□ -1.67
VMA1	YDL185W	MRC1	P25588	1096 aa		4.64	□□□□□ -1.67
VMA1	YDL185W	SWI3	P32591	825 aa		4.64	□□□□□ -1.67
VMA1	YDL185W	MRX12	P47084	519 aa		4.64	□□□□□ -1.67
VMA1	YDL185W	VPS70	P47161	811 aa		4.64	□□□□□ -1.67
VMA1	YDL185W	SWH1	P35845	1188 aa		4.64	□□□□□ -1.67
VMA1	YDL185W	RFC1	P38630	861 aa	Known RBP	4.64	□□□□□ -1.67
VMA1	YDL185W	BCK1	Q01389	1478 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	SES1	P07284	462 aa	Known RBP	4.63	□□□□□ -1.67
VMA1	YDL185W	RNR2	P09938	399 aa	Known RBP	4.63	□□□□□ -1.67
VMA1	YDL185W	HIM1	Q06674	414 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	DCD1	P06773	312 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	FRS2	P15625	503 aa	Known RBP	4.63	□□□□□ -1.67
VMA1	YDL185W	ATE1	P16639	503 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	ELM1	P32801	640 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	NPR3	P38742	1146 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	PEX19	Q07418	342 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	NOP8	Q08287	484 aa	Predicted RBP	4.63	□□□□□ -1.67
VMA1	YDL185W	PLP2	Q12017	286 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	TRS33	Q99394	268 aa		4.63	□□□□□ -1.67
VMA1	YDL185W	TAF13	P11747	167 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	PET111	P08468	800 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	KAR2	P16474	682 aa	Known RBP	4.62	□□□□□ -1.67
VMA1	YDL185W	RAD51	P25454	400 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	MVP1	P40959	511 aa	Known RBP	4.62	□□□□□ -1.67
VMA1	YDL185W	ARP5	P53946	755 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	COG4	Q06096	861 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	CTI6	Q08923	506 aa		4.62	□□□□□ -1.67
VMA1	YDL185W	CCT5	P40413	562 aa	Known RBP	4.61	□□□□□ -1.67
VMA1	YDL185W	TAN1	P53072	289 aa	Predicted RBP	4.61	□□□□□ -1.67
VMA1	YDL185W	PAP2	P53632	584 aa	Known RBP	4.61	□□□□□ -1.67
VMA1	YDL185W	HSP82	P02829	709 aa	Known RBP	4.61	□□□□□ -1.67
VMA1	YDL185W	CDC16	P09798	840 aa		4.61	□□□□□ -1.67
VMA1	YDL185W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
VMA1	YDL185W	NNF2	P53253	936 aa		4.61	□□□□□ -1.67
VMA1	YDL185W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
VMA1	YDL185W	SPO1	P53541	631 aa		4.61	□□□□□ -1.67
VMA1	YDL185W	SPT5	P27692	1063 aa	Known RBP	4.6	□□□□□ -1.67
VMA1	YDL185W	TTI1	P36097	1038 aa		4.6	□□□□□ -1.67
VMA1	YDL185W	CTK3	P46963	296 aa	Predicted RBP	4.6	□□□□□ -1.67
VMA1	YDL185W	CTH1	P47976	325 aa		4.6	□□□□□ -1.67
VMA1	YDL185W	YNG2	P38806	282 aa	Known RBP	4.6	□□□□□ -1.67
VMA1	YDL185W	YNL050C	P53952	270 aa		4.6	□□□□□ -1.67
VMA1	YDL185W	YPL225W	Q08971	146 aa	Known RBP	4.6	□□□□□ -1.67
VMA1	YDL185W	PUS1	Q12211	544 aa	Known RBP	4.6	□□□□□ -1.67
VMA1	YDL185W	SEC39	Q12745	709 aa		4.6	□□□□□ -1.67
VMA1	YDL185W	RAD3	P06839	778 aa		4.59	□□□□□ -1.67
VMA1	YDL185W	RGD1	P38339	666 aa		4.59	□□□□□ -1.67
VMA1	YDL185W	ALD4	P46367	519 aa	Known RBP	4.59	□□□□□ -1.67
VMA1	YDL185W	SRC1	Q03707	834 aa		4.59	□□□□□ -1.67
VMA1	YDL185W	CSI1	Q04368	295 aa		4.59	□□□□□ -1.67
VMA1	YDL185W	TAP42	Q04372	366 aa		4.59	□□□□□ -1.67
VMA1	YDL185W	HSP104	P31539	908 aa	Known RBP	4.59	□□□□□ -1.67
VMA1	YDL185W	GRX3	Q03835	250 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	GIN4	Q12263	1142 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	TFC8	Q12308	588 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	STE11	P23561	717 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	YKR023W	P36119	530 aa	Known RBP	4.58	□□□□□ -1.68
VMA1	YDL185W	RFC5	P38251	354 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	HOT1	Q03213	719 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	AOS1	Q06624	347 aa		4.58	□□□□□ -1.68
VMA1	YDL185W	FYV10	P40492	516 aa		4.57	□□□□□ -1.68
VMA1	YDL185W	RPS19A	P07280	144 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	RPS19B	P07281	144 aa	Predicted RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	VAS1	P07806	1104 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	PRX1	P34227	261 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	SRT1	Q03175	343 aa		4.57	□□□□□ -1.68
VMA1	YDL185W	DDP1	Q99321	188 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	TY1B-NL2	Q99337	1749 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	APC1	P53886	1748 aa		4.57	□□□□□ -1.68
VMA1	YDL185W	SET1	P38827	1080 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	RIA1	P53893	1110 aa		4.57	□□□□□ -1.68
VMA1	YDL185W	RRB1	Q04225	511 aa	Known RBP	4.57	□□□□□ -1.68
VMA1	YDL185W	YRF1-2	P40105	1681 aa		4.57	□□□□□ -1.68
VMA1	YDL185W	AI2	P03876	854 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	RPL19A	P0CX82	189 aa	Known RBP	4.56	□□□□□ -1.68
VMA1	YDL185W	RPL19B	P0CX83	189 aa	Predicted RBP	4.56	□□□□□ -1.68
VMA1	YDL185W	PCH2	P38126	564 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	SGD1	Q06132	899 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	SFH1	Q06168	426 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	MCM16	Q12262	181 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	AIM9	P40053	627 aa	Known RBP	4.56	□□□□□ -1.68
VMA1	YDL185W	RIO2	P40160	425 aa	Known RBP	4.56	□□□□□ -1.68
VMA1	YDL185W	STR2	P47164	639 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	DSD1	P53095	428 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	WAR1	Q03631	944 aa		4.56	□□□□□ -1.68
VMA1	YDL185W	GPA1	P08539	472 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms