RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W PDC1P06169 563 aaKnown RBP1.71□□□□□ -2.14
CDC39YCR093W ISW1P38144 1129 aa1.71□□□□□ -2.14
CDC39YCR093W NNF1P47149 201 aa1.71□□□□□ -2.14
CDC39YCR093W MSC6Q08818 692 aaKnown RBP1.71□□□□□ -2.14
CDC39YCR093W HAT1Q12341 374 aa1.71□□□□□ -2.14
CDC39YCR093W ISF1P32488 338 aa1.71□□□□□ -2.14
CDC39YCR093W FBP26P32604 452 aa1.71□□□□□ -2.14
CDC39YCR093W RRP14P36080 434 aaKnown RBP1.71□□□□□ -2.14
CDC39YCR093W YNL011CP53980 444 aa1.71□□□□□ -2.14
CDC39YCR093W FRK1Q03002 865 aaPredicted RBP1.71□□□□□ -2.14
CDC39YCR093W THO2P53552 1597 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W RPS6AP0CX37 236 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W RPS6BP0CX38 236 aaPredicted RBP1.7□□□□□ -2.14
CDC39YCR093W PET112P33893 541 aa1.7□□□□□ -2.14
CDC39YCR093W WTM2Q12206 467 aa1.7□□□□□ -2.14
CDC39YCR093W YOR131CQ12486 218 aa1.7□□□□□ -2.14
CDC39YCR093W PDI1P17967 522 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W GRS1P38088 690 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W LDH1P38139 375 aa1.7□□□□□ -2.14
CDC39YCR093W ISU1Q03020 165 aa1.7□□□□□ -2.14
CDC39YCR093W HEH2Q03281 663 aa1.7□□□□□ -2.14
CDC39YCR093W NSI1Q12457 570 aa1.7□□□□□ -2.14
CDC39YCR093W MYO2P19524 1574 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W YKL077WP36081 392 aa1.7□□□□□ -2.14
CDC39YCR093W QDR1P40475 563 aa1.7□□□□□ -2.14
CDC39YCR093W MID1P41821 548 aa1.7□□□□□ -2.14
CDC39YCR093W SSF1P38789 453 aaPredicted RBP1.7□□□□□ -2.14
CDC39YCR093W PDR1P12383 1068 aa1.7□□□□□ -2.14
CDC39YCR093W SQT1P35184 431 aa1.7□□□□□ -2.14
CDC39YCR093W XDJ1P39102 459 aa1.7□□□□□ -2.14
CDC39YCR093W HED1Q03937 162 aa1.7□□□□□ -2.14
CDC39YCR093W ESF1Q06344 628 aaKnown RBP1.7□□□□□ -2.14
CDC39YCR093W VPS35P34110 944 aa1.69□□□□□ -2.14
CDC39YCR093W MET1P36150 593 aa1.69□□□□□ -2.14
CDC39YCR093W CWC24P53769 259 aa1.69□□□□□ -2.14
CDC39YCR093W BSC2Q05611 235 aa1.69□□□□□ -2.14
CDC39YCR093W AMS1P22855 1083 aa1.69□□□□□ -2.14
CDC39YCR093W BDP1P46678 594 aa1.69□□□□□ -2.14
CDC39YCR093W PEP7P32609 515 aa1.69□□□□□ -2.14
CDC39YCR093W PSH1Q12161 406 aa1.69□□□□□ -2.14
CDC39YCR093W AIR2Q12476 344 aaKnown RBP1.69□□□□□ -2.14
CDC39YCR093W CDC4P07834 779 aa1.69□□□□□ -2.14
CDC39YCR093W TAF13P11747 167 aa1.69□□□□□ -2.14
CDC39YCR093W LEM3P42838 414 aa1.69□□□□□ -2.14
CDC39YCR093W PNP1Q05788 311 aa1.69□□□□□ -2.14
CDC39YCR093W BUD20Q08004 166 aaPredicted RBP1.69□□□□□ -2.14
CDC39YCR093W CBC2Q08920 208 aaKnown RBP RIP-Chip data1.68□□□□□ -2.14not detected
CDC39YCR093W YBL113CQ7M4S9 792 aa1.68□□□□□ -2.14
CDC39YCR093W THS1P04801 734 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W DPS1P04802 557 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W MRPS18P42847 217 aa1.68□□□□□ -2.14
CDC39YCR093W SUM1P46676 1062 aa1.68□□□□□ -2.14
CDC39YCR093W MTR4P47047 1073 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W POL32P47110 350 aa1.68□□□□□ -2.14
CDC39YCR093W FPR4Q06205 392 aaPredicted RBP1.68□□□□□ -2.14
CDC39YCR093W YOR352WQ08816 343 aa1.68□□□□□ -2.14
CDC39YCR093W TMA46Q12000 345 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W YDJ1P25491 409 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W MRT4P33201 236 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W HSE1P38753 452 aa1.68□□□□□ -2.14
CDC39YCR093W HXT8P40886 569 aa1.68□□□□□ -2.14
CDC39YCR093W STR2P47164 639 aa1.68□□□□□ -2.14
CDC39YCR093W ISM1P48526 1002 aa1.68□□□□□ -2.14
CDC39YCR093W CWC15Q03772 175 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W UTP4Q06679 776 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W NGR1P32831 672 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W POB3Q04636 552 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W URN1Q06525 465 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W EMW1P42842 904 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W MSN5P52918 1224 aa1.68□□□□□ -2.14
CDC39YCR093W APP1P53933 587 aa1.68□□□□□ -2.14
CDC39YCR093W ADE12P80210 433 aaKnown RBP1.68□□□□□ -2.14
CDC39YCR093W MCD1Q12158 566 aa1.68□□□□□ -2.14
CDC39YCR093W IRS4P36115 615 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W UTP7P40055 554 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W UBP15P50101 1230 aa1.67□□□□□ -2.14
CDC39YCR093W FOX2Q02207 900 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W SSK2P53599 1579 aa1.67□□□□□ -2.14
CDC39YCR093W REV3P14284 1504 aa1.67□□□□□ -2.14
CDC39YCR093W MNR2P35724 969 aa1.67□□□□□ -2.14
CDC39YCR093W TCB3Q03640 1545 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W ALD4P46367 519 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W FAR11P53917 953 aa1.67□□□□□ -2.14
CDC39YCR093W CDC55Q00362 526 aa1.67□□□□□ -2.14
CDC39YCR093W MRX10Q05648 414 aa1.67□□□□□ -2.14
CDC39YCR093W RAD55P38953 406 aa1.67□□□□□ -2.14
CDC39YCR093W FIG4P42837 879 aa1.67□□□□□ -2.14
CDC39YCR093W DAL1P32375 460 aa1.67□□□□□ -2.14
CDC39YCR093W NCL1P38205 684 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W ILV3P39522 585 aaKnown RBP1.67□□□□□ -2.14
CDC39YCR093W YJL049WP47048 450 aa1.67□□□□□ -2.14
CDC39YCR093W BRE2P43132 505 aa1.66□□□□□ -2.14
CDC39YCR093W TRS120Q04183 1289 aa1.66□□□□□ -2.14
CDC39YCR093W DFG5Q05031 458 aa1.66□□□□□ -2.14
CDC39YCR093W SPO75Q07798 868 aa1.66□□□□□ -2.14
CDC39YCR093W KTR1P27810 393 aaKnown RBP1.66□□□□□ -2.14
CDC39YCR093W YHL050CP38721 697 aa1.66□□□□□ -2.14
CDC39YCR093W YHR219WP38900 624 aa1.66□□□□□ -2.14
CDC39YCR093W PRP9P19736 530 aaKnown RBP1.66□□□□□ -2.14
CDC39YCR093W AFT1P22149 690 aa1.66□□□□□ -2.14
Retrieved 100 of 5,963 RNA–protein pairs in 42.4 ms