RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LSR1	LSR1	BDP1	P46678	594 aa		10.31	□□□□□ -0.76
LSR1	LSR1	YGL015C	P33199	130 aa		10.3	□□□□□ -0.76
LSR1	LSR1	CIR1	P42940	261 aa		10.3	□□□□□ -0.76
LSR1	LSR1	ADE16	P54113	591 aa	Known RBP	10.3	□□□□□ -0.76
LSR1	LSR1	OSM1	P21375	501 aa	Known RBP	10.29	□□□□□ -0.76
LSR1	LSR1	HRQ1	Q05549	1077 aa		10.29	□□□□□ -0.76
LSR1	LSR1	ECM21	P38167	1117 aa	Known RBP	10.28	□□□□□ -0.76
LSR1	LSR1	UTP10	P42945	1769 aa	Known RBP	10.27	□□□□□ -0.77
LSR1	LSR1	RIM15	P43565	1770 aa		10.27	□□□□□ -0.77
LSR1	LSR1	UBP12	P39538	1254 aa		10.27	□□□□□ -0.77
LSR1	LSR1	HST1	P53685	503 aa		10.27	□□□□□ -0.77
LSR1	LSR1	MEC3	Q02574	474 aa		10.27	□□□□□ -0.77
LSR1	LSR1	LPD1	P09624	499 aa	Known RBP	10.26	□□□□□ -0.77
LSR1	LSR1	AAP1	P37898	856 aa	Known RBP	10.26	□□□□□ -0.77
LSR1	LSR1	HYR1	P40581	163 aa	Known RBP	10.26	□□□□□ -0.77
LSR1	LSR1	KRE33	P53914	1056 aa	Known RBP	10.26	□□□□□ -0.77
LSR1	LSR1	COG8	Q04632	607 aa		10.26	□□□□□ -0.77
LSR1	LSR1	RIM20	Q12033	661 aa		10.26	□□□□□ -0.77
LSR1	LSR1	MIF2	P35201	549 aa		10.25	□□□□□ -0.77
LSR1	LSR1	KTR3	P38130	404 aa	Predicted RBP	10.25	□□□□□ -0.77
LSR1	LSR1	SET1	P38827	1080 aa	Known RBP	10.25	□□□□□ -0.77
LSR1	LSR1	AIM9	P40053	627 aa	Known RBP	10.25	□□□□□ -0.77
LSR1	LSR1	MRPS35	P53292	345 aa		10.25	□□□□□ -0.77
LSR1	LSR1	RKM3	P38222	552 aa		10.24	□□□□□ -0.77
LSR1	LSR1	PIL1	P53252	339 aa	Known RBP	10.24	□□□□□ -0.77
LSR1	LSR1	RMD1	Q03441	430 aa		10.24	□□□□□ -0.77
LSR1	LSR1	PDR18	P53756	1333 aa		10.24	□□□□□ -0.77
LSR1	LSR1	BIK1	P11709	440 aa		10.23	□□□□□ -0.77
LSR1	LSR1	RVS167	P39743	482 aa	Known RBP	10.23	□□□□□ -0.77
LSR1	LSR1	RSC1	P53236	928 aa		10.23	□□□□□ -0.77
LSR1	LSR1	LCD1	Q04377	747 aa		10.23	□□□□□ -0.77
LSR1	LSR1	NCB2	Q92317	146 aa		10.23	□□□□□ -0.77
LSR1	LSR1	KEX1	P09620	729 aa		10.22	□□□□□ -0.77
LSR1	LSR1	RPN12	P32496	274 aa		10.22	□□□□□ -0.77
LSR1	LSR1	SSF1	P38789	453 aa	Predicted RBP	10.22	□□□□□ -0.77
LSR1	LSR1	HXT10	P43581	546 aa		10.22	□□□□□ -0.77
LSR1	LSR1	ALO1	P54783	526 aa	Known RBP	10.22	□□□□□ -0.77
LSR1	LSR1	IES2	P40154	320 aa		10.21	□□□□□ -0.77
LSR1	LSR1	YGL242C	P53066	181 aa		10.21	□□□□□ -0.77
LSR1	LSR1	MLC1	P53141	149 aa		10.21	□□□□□ -0.77
LSR1	LSR1	YGL081W	P53156	320 aa		10.21	□□□□□ -0.77
LSR1	LSR1	FRK1	Q03002	865 aa	Predicted RBP	10.21	□□□□□ -0.77
LSR1	LSR1	RMT2	Q03305	412 aa		10.21	□□□□□ -0.77
LSR1	LSR1	VPS64	Q03944	604 aa		10.21	□□□□□ -0.77
LSR1	LSR1	FPR4	Q06205	392 aa	Predicted RBP	10.21	□□□□□ -0.77
LSR1	LSR1	BRE1	Q07457	700 aa	Known RBP	10.21	□□□□□ -0.77
LSR1	LSR1	YPR204W	Q08995	1032 aa		10.21	□□□□□ -0.77
LSR1	LSR1	AIM44	Q99299	758 aa		10.21	□□□□□ -0.77
LSR1	LSR1	APL2	P36000	726 aa	Predicted RBP	10.2	□□□□□ -0.78
LSR1	LSR1	CTR9	P89105	1077 aa		10.2	□□□□□ -0.78
LSR1	LSR1	YBP2	P53169	641 aa		10.19	□□□□□ -0.78
LSR1	LSR1	NOP53	Q12080	455 aa	Known RBP	10.19	□□□□□ -0.78
LSR1	LSR1	ARG8	P18544	423 aa		10.18	□□□□□ -0.78
LSR1	LSR1	RIM101	P33400	625 aa		10.18	□□□□□ -0.78
LSR1	LSR1	YLR271W	Q06152	274 aa		10.18	□□□□□ -0.78
LSR1	LSR1	ENT1	Q12518	454 aa		10.18	□□□□□ -0.78
LSR1	LSR1	MBR1	P23493	339 aa		10.17	□□□□□ -0.78
LSR1	LSR1	YKL133C	P36066	463 aa		10.17	□□□□□ -0.78
LSR1	LSR1	PIB2	P53191	635 aa		10.17	□□□□□ -0.78
LSR1	LSR1	ATG13	Q06628	738 aa		10.17	□□□□□ -0.78
LSR1	LSR1	SSP2	Q08646	371 aa		10.17	□□□□□ -0.78
LSR1	LSR1	TUM1	Q08686	304 aa	Known RBP	10.17	□□□□□ -0.78
LSR1	LSR1	DCD1	P06773	312 aa		10.16	□□□□□ -0.78
LSR1	LSR1	KTR1	P27810	393 aa	Known RBP	10.16	□□□□□ -0.78
LSR1	LSR1	SLA1	P32790	1244 aa		10.16	□□□□□ -0.78
LSR1	LSR1	CDC27	P38042	758 aa		10.16	□□□□□ -0.78
LSR1	LSR1	PEX19	Q07418	342 aa		10.16	□□□□□ -0.78
LSR1	LSR1	APC11	Q12157	165 aa		10.16	□□□□□ -0.78
LSR1	LSR1	QCR6	P00127	147 aa		10.15	□□□□□ -0.78
LSR1	LSR1	RPL19A	P0CX82	189 aa	Known RBP	10.15	□□□□□ -0.78
LSR1	LSR1	RPL19B	P0CX83	189 aa	Predicted RBP	10.15	□□□□□ -0.78
LSR1	LSR1	ELM1	P32801	640 aa		10.15	□□□□□ -0.78
LSR1	LSR1	YKR023W	P36119	530 aa	Known RBP	10.15	□□□□□ -0.78
LSR1	LSR1	RSM25	P40496	264 aa		10.15	□□□□□ -0.78
LSR1	LSR1	EPS1	P40557	701 aa		10.15	□□□□□ -0.78
LSR1	LSR1	CWH41	P53008	833 aa		10.15	□□□□□ -0.78
LSR1	LSR1	SSK22	P25390	1331 aa	Predicted RBP	10.14	□□□□□ -0.79
LSR1	LSR1	MCM2	P29469	868 aa		10.14	□□□□□ -0.79
LSR1	LSR1	KRI1	P42846	591 aa	Known RBP	10.14	□□□□□ -0.79
LSR1	LSR1	ENV9	Q08651	330 aa		10.14	□□□□□ -0.79
LSR1	LSR1	DID4	P36108	232 aa		10.13	□□□□□ -0.79
LSR1	LSR1	SPO22	P40511	975 aa		10.13	□□□□□ -0.79
LSR1	LSR1	FCP1	Q03254	732 aa		10.13	□□□□□ -0.79
LSR1	LSR1	MTC5	Q03897	1148 aa		10.13	□□□□□ -0.79
LSR1	LSR1	PSH1	Q12161	406 aa		10.13	□□□□□ -0.79
LSR1	LSR1	PRX1	P34227	261 aa	Known RBP	10.12	□□□□□ -0.79
LSR1	LSR1	CTF18	P49956	741 aa		10.12	□□□□□ -0.79
LSR1	LSR1	MDG1	P53885	366 aa		10.12	□□□□□ -0.79
LSR1	LSR1	PHM7	Q12252	991 aa		10.12	□□□□□ -0.79
LSR1	LSR1	GYP5	Q12344	894 aa		10.12	□□□□□ -0.79
LSR1	LSR1	AI2	P03876	854 aa		10.11	□□□□□ -0.79
LSR1	LSR1	FRS2	P15625	503 aa	Known RBP	10.11	□□□□□ -0.79
LSR1	LSR1	CCT5	P40413	562 aa	Known RBP	10.1	□□□□□ -0.79
LSR1	LSR1	UBP16	Q02863	499 aa		10.1	□□□□□ -0.79
LSR1	LSR1	YPL150W	Q12152	901 aa		10.1	□□□□□ -0.79
LSR1	LSR1	CPA2	P03965	1118 aa	Known RBP	10.09	□□□□□ -0.79
LSR1	LSR1	STM1	P39015	273 aa	Known RBP	10.09	□□□□□ -0.79
LSR1	LSR1	SEC18	P18759	758 aa	Known RBP	10.08	□□□□□ -0.8
LSR1	LSR1	MPE1	P35728	441 aa	Known RBP	10.08	□□□□□ -0.8
LSR1	LSR1	NPR3	P38742	1146 aa		10.08	□□□□□ -0.8

Retrieved 100 of 5,963 RNA–protein pairs in 31.1 ms