RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ARID4BQ4LE39 1312 aaPredicted RBP15.72■□□□□ 0.11
CLN6-217ENST00000636964 NUTM2DQ5VT03 806 aaPredicted RBP15.71■□□□□ 0.11
CLN6-217ENST00000636964 CCDC136Q96JN2 1154 aa15.71■□□□□ 0.11
CLN6-217ENST00000636964 TESK2Q96S53 571 aa15.71■□□□□ 0.11
CLN6-217ENST00000636964 MADDQ8WXG6 1647 aa15.71■□□□□ 0.11
CLN6-217ENST00000636964 MLECQ14165 292 aa15.71■□□□□ 0.1
CLN6-217ENST00000636964 SENP3Q9H4L4 574 aaPredicted RBP15.71■□□□□ 0.1
CLN6-217ENST00000636964 DISP3Q9P2K9 1392 aa15.69■□□□□ 0.1
CLN6-217ENST00000636964 MRS2Q9HD23 443 aa15.69■□□□□ 0.1
CLN6-217ENST00000636964 KIF1BO60333 1816 aa15.69■□□□□ 0.1
CLN6-217ENST00000636964 COL17A1Q9UMD9 1497 aaPredicted RBP15.68■□□□□ 0.1
CLN6-217ENST00000636964 FAM9BQ8IZU0 186 aa15.68■□□□□ 0.1
CLN6-217ENST00000636964 STAC3Q96MF2 364 aa15.68■□□□□ 0.1
CLN6-217ENST00000636964 MROH2AA6NES4 1674 aa15.68■□□□□ 0.1
CLN6-217ENST00000636964 CAMSAP1Q5T5Y3 1602 aa15.67■□□□□ 0.1
CLN6-217ENST00000636964 KIF13AQ9H1H9 1805 aa15.67■□□□□ 0.1
CLN6-217ENST00000636964 NOS1P29475 1434 aa15.67■□□□□ 0.1
CLN6-217ENST00000636964 FBXO31Q5XUX0 539 aaPredicted RBP15.66■□□□□ 0.1
CLN6-217ENST00000636964 NCBP3Q53F19 620 aaKnown RBP15.66■□□□□ 0.1
CLN6-217ENST00000636964 TMF1P82094 1093 aa15.66■□□□□ 0.1
CLN6-217ENST00000636964 SIGLEC1Q9BZZ2 1709 aa15.66■□□□□ 0.1
CLN6-217ENST00000636964 HNRNPUQ00839 825 aaKnown RBP eCLIP15.65■□□□□ 0.1
CLN6-217ENST00000636964 IDI1Q13907 227 aa15.65■□□□□ 0.1
CLN6-217ENST00000636964 SALL2Q9Y467 1007 aaPredicted RBP15.65■□□□□ 0.1
CLN6-217ENST00000636964 ZMYM4Q5VZL5 1548 aa15.65■□□□□ 0.1
CLN6-217ENST00000636964 LAMC1P11047 1609 aa15.65■□□□□ 0.1
CLN6-217ENST00000636964 KLHL34Q8N239 644 aa15.63■□□□□ 0.09
CLN6-217ENST00000636964 ADGRB3O60242 1522 aa15.62■□□□□ 0.09
CLN6-217ENST00000636964 SCAF11Q99590 1463 aaKnown RBP15.62■□□□□ 0.09
CLN6-217ENST00000636964 TMEM132EQ6IEE7 984 aa15.61■□□□□ 0.09
CLN6-217ENST00000636964 SYNMO15061 1565 aa15.61■□□□□ 0.09
CLN6-217ENST00000636964 PANK3Q9H999 370 aa15.61■□□□□ 0.09
CLN6-217ENST00000636964 MYOM2P54296 1465 aa15.61■□□□□ 0.09
CLN6-217ENST00000636964 NEURL4Q96JN8 1562 aa15.6■□□□□ 0.09
CLN6-217ENST00000636964 TRAK1Q9UPV9 953 aa15.59■□□□□ 0.09
CLN6-217ENST00000636964 ARHGAP31Q2M1Z3 1444 aa15.59■□□□□ 0.09
CLN6-217ENST00000636964 IQGAP1P46940 1657 aa15.59■□□□□ 0.09
CLN6-217ENST00000636964 IFT172Q9UG01 1749 aa15.58■□□□□ 0.09
CLN6-217ENST00000636964 CC2D1BQ5T0F9 858 aaKnown RBP15.58■□□□□ 0.08
CLN6-217ENST00000636964 SENP3-EIF4A1A0A087X0R7 540 aa15.57■□□□□ 0.08
CLN6-217ENST00000636964 PER1O15534 1290 aaPredicted RBP15.57■□□□□ 0.08
CLN6-217ENST00000636964 SLC52A1Q9NWF4 448 aa15.57■□□□□ 0.08
CLN6-217ENST00000636964 ZC3H13Q5T200 1668 aaKnown RBP15.56■□□□□ 0.08
CLN6-217ENST00000636964 C14orf93Q9H972 538 aaKnown RBP15.56■□□□□ 0.08
CLN6-217ENST00000636964 RPGRIP1LQ68CZ1 1315 aa15.56■□□□□ 0.08
CLN6-217ENST00000636964 STAG3Q9UJ98 1225 aa15.56■□□□□ 0.08
CLN6-217ENST00000636964 TMC1Q8TDI8 760 aa15.55■□□□□ 0.08
CLN6-217ENST00000636964 FANCIQ9NVI1 1328 aa15.55■□□□□ 0.08
CLN6-217ENST00000636964 EIF3AQ14152 1382 aaKnown RBP15.55■□□□□ 0.08
CLN6-217ENST00000636964 VGFO15240 615 aaPredicted RBP15.55■□□□□ 0.08
CLN6-217ENST00000636964 TRHP20396 242 aaPredicted RBP15.55■□□□□ 0.08
CLN6-217ENST00000636964 NRXN1Q9ULB1 1477 aa15.55■□□□□ 0.08
CLN6-217ENST00000636964 PPLO60437 1756 aa15.55■□□□□ 0.08
CLN6-217ENST00000636964 PIK3C2BO00750 1634 aa15.54■□□□□ 0.08
CLN6-217ENST00000636964 PIK3C2GO75747 1445 aa15.54■□□□□ 0.08
CLN6-217ENST00000636964 PHF23Q9BUL5 403 aaPredicted RBP15.54■□□□□ 0.08
CLN6-217ENST00000636964 KIAA1210Q9ULL0 1709 aa15.54■□□□□ 0.08
CLN6-217ENST00000636964 ESF1Q9H501 851 aaKnown RBP15.53■□□□□ 0.08
CLN6-217ENST00000636964 PREX1Q8TCU6 1659 aa15.53■□□□□ 0.08
CLN6-217ENST00000636964 AGLP35573 1532 aa15.52■□□□□ 0.08
CLN6-217ENST00000636964 CLTCQ00610 1675 aaKnown RBP15.52■□□□□ 0.07
CLN6-217ENST00000636964 RALBP1Q15311 655 aa15.52■□□□□ 0.07
CLN6-217ENST00000636964 CDCA8Q53HL2 280 aa15.51■□□□□ 0.07
CLN6-217ENST00000636964 KTN1Q86UP2 1357 aaKnown RBP15.51■□□□□ 0.07
CLN6-217ENST00000636964 MYBBP1AQ9BQG0 1328 aaKnown RBP15.51■□□□□ 0.07
CLN6-217ENST00000636964 MYO5BQ9ULV0 1848 aa15.51■□□□□ 0.07
CLN6-217ENST00000636964 STK26Q9P289 416 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 PPP6R1Q9UPN7 881 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 ERVK-7P63135 1459 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 REREQ9P2R6 1566 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 CENPJQ9HC77 1338 aaPredicted RBP15.5■□□□□ 0.07
CLN6-217ENST00000636964 NEXMIFQ5QGS0 1516 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 ARHGEF40Q8TER5 1519 aa15.5■□□□□ 0.07
CLN6-217ENST00000636964 SAFB2Q14151 953 aaKnown RBP eCLIP15.5■□□□□ 0.07
CLN6-217ENST00000636964 NEFLP07196 543 aa15.48■□□□□ 0.07
CLN6-217ENST00000636964 PNISRQ8TF01 805 aaKnown RBP15.48■□□□□ 0.07
CLN6-217ENST00000636964 KNSTRNQ9Y448 316 aa15.48■□□□□ 0.07
CLN6-217ENST00000636964 PLPPR3Q6T4P5 718 aa15.47■□□□□ 0.07
CLN6-217ENST00000636964 TMEM131LA2VDJ0 1609 aa15.47■□□□□ 0.07
CLN6-217ENST00000636964 PARD3Q8TEW0 1356 aa15.47■□□□□ 0.07
CLN6-217ENST00000636964 ZMYM3Q14202 1370 aa15.46■□□□□ 0.07
CLN6-217ENST00000636964 ADGRB1O14514 1584 aa15.46■□□□□ 0.07
CLN6-217ENST00000636964 DEKP35659 375 aaKnown RBP15.46■□□□□ 0.06
CLN6-217ENST00000636964 SETBP1Q9Y6X0 1596 aa15.45■□□□□ 0.06
CLN6-217ENST00000636964 NLRP13Q86W25 1043 aa15.45■□□□□ 0.06
CLN6-217ENST00000636964 BRD4O60885 1362 aaPredicted RBP15.44■□□□□ 0.06
CLN6-217ENST00000636964 PDIA4P13667 645 aaKnown RBP15.43■□□□□ 0.06
CLN6-217ENST00000636964 PDE4CQ08493 712 aa15.43■□□□□ 0.06
CLN6-217ENST00000636964 IRX6P78412 446 aaPredicted RBP15.42■□□□□ 0.06
CLN6-217ENST00000636964 CEBPAP49715 358 aaPredicted RBP15.42■□□□□ 0.06
CLN6-217ENST00000636964 AMER1Q5JTC6 1135 aaPredicted RBP15.42■□□□□ 0.06
CLN6-217ENST00000636964 SLC12A5Q9H2X9 1139 aa15.42■□□□□ 0.06
CLN6-217ENST00000636964 KDM5AP29375 1690 aaKnown RBP15.41■□□□□ 0.06
CLN6-217ENST00000636964 ZBED9Q6R2W3 1325 aa15.41■□□□□ 0.06
CLN6-217ENST00000636964 CARD14Q9BXL6 1004 aa15.41■□□□□ 0.06
CLN6-217ENST00000636964 ZFYVE9O95405 1425 aa15.4■□□□□ 0.06
CLN6-217ENST00000636964 MYOM1P52179 1685 aa15.4■□□□□ 0.06
CLN6-217ENST00000636964 SPATA31D1Q6ZQQ2 1576 aa15.39■□□□□ 0.05
CLN6-217ENST00000636964 A2ML1A8K2U0 1454 aa15.39■□□□□ 0.05
CLN6-217ENST00000636964 SBNO2Q9Y2G9 1366 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms