RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 TET3O43151 1660 aa16.33■□□□□ 0.2
LINC00538-201ENST00000626109 MPHOSPH9Q99550 1183 aa16.33■□□□□ 0.2
LINC00538-201ENST00000626109 CLTCQ00610 1675 aaKnown RBP16.32■□□□□ 0.2
LINC00538-201ENST00000626109 FER1L4A9Z1Z3 1794 aa16.32■□□□□ 0.2
LINC00538-201ENST00000626109 CAMSAP1Q5T5Y3 1602 aa16.31■□□□□ 0.2
LINC00538-201ENST00000626109 ADAMTSL3P82987 1691 aa16.31■□□□□ 0.2
LINC00538-201ENST00000626109 EFCAB6Q5THR3 1501 aa16.31■□□□□ 0.2
LINC00538-201ENST00000626109 MADDQ8WXG6 1647 aa16.3■□□□□ 0.2
LINC00538-201ENST00000626109 DHX57Q6P158 1386 aaKnown RBP16.29■□□□□ 0.2
LINC00538-201ENST00000626109 MROH2AA6NES4 1674 aa16.28■□□□□ 0.2
LINC00538-201ENST00000626109 ARHGAP31Q2M1Z3 1444 aa16.27■□□□□ 0.2
LINC00538-201ENST00000626109 RPRD2Q5VT52 1461 aaKnown RBP16.27■□□□□ 0.2
LINC00538-201ENST00000626109 RIMS1Q86UR5 1692 aaKnown RBP16.27■□□□□ 0.2
LINC00538-201ENST00000626109 E9PCH4 1651 aa16.26■□□□□ 0.19
LINC00538-201ENST00000626109 ZMYM3Q14202 1370 aa16.26■□□□□ 0.19
LINC00538-201ENST00000626109 NPATQ14207 1427 aa16.26■□□□□ 0.19
LINC00538-201ENST00000626109 BRPF1P55201 1214 aaPredicted RBP16.26■□□□□ 0.19
LINC00538-201ENST00000626109 FOXD1Q16676 465 aa16.23■□□□□ 0.19
LINC00538-201ENST00000626109 C3P01024 1663 aa16.21■□□□□ 0.19
LINC00538-201ENST00000626109 ERVK-7P63135 1459 aa16.2■□□□□ 0.18
LINC00538-201ENST00000626109 MIER1Q8N108 512 aa16.2■□□□□ 0.18
LINC00538-201ENST00000626109 C1orf115Q9H7X2 142 aa16.2■□□□□ 0.18
LINC00538-201ENST00000626109 PTPRMP28827 1452 aa16.2■□□□□ 0.18
LINC00538-201ENST00000626109 SPHKAPQ2M3C7 1700 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 BCL11BQ9C0K0 894 aaPredicted RBP16.19■□□□□ 0.18
LINC00538-201ENST00000626109 PREX1Q8TCU6 1659 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 PTPRTO14522 1441 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 KDM4FA0A1W2PPD8 638 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 CEBPAP49715 358 aaPredicted RBP16.19■□□□□ 0.18
LINC00538-201ENST00000626109 SPRYD3Q8NCJ5 442 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 SPATA31D1Q6ZQQ2 1576 aa16.19■□□□□ 0.18
LINC00538-201ENST00000626109 NOS1P29475 1434 aa16.18■□□□□ 0.18
LINC00538-201ENST00000626109 FBXO31Q5XUX0 539 aaPredicted RBP16.18■□□□□ 0.18
LINC00538-201ENST00000626109 TRPM2O94759 1503 aa16.18■□□□□ 0.18
LINC00538-201ENST00000626109 ANKRD30BQ9BXX2 1392 aa16.18■□□□□ 0.18
LINC00538-201ENST00000626109 PKNOX2Q96KN3 472 aa16.17■□□□□ 0.18
LINC00538-201ENST00000626109 PLA2R1Q13018 1463 aa16.16■□□□□ 0.18
LINC00538-201ENST00000626109 TNRQ92752 1358 aa16.15■□□□□ 0.18
LINC00538-201ENST00000626109 SYNMO15061 1565 aa16.15■□□□□ 0.18
LINC00538-201ENST00000626109 CCDC144AA2RUR9 1427 aa16.15■□□□□ 0.18
LINC00538-201ENST00000626109 CFAP65Q6ZU64 1925 aaKnown RBP16.15■□□□□ 0.18
LINC00538-201ENST00000626109 ZMYND15Q9H091 742 aa16.13■□□□□ 0.17
LINC00538-201ENST00000626109 SLC52A1Q9NWF4 448 aa16.13■□□□□ 0.17
LINC00538-201ENST00000626109 YTHDC1Q96MU7 727 aaKnown RBP16.12■□□□□ 0.17
LINC00538-201ENST00000626109 RSPH6AQ9H0K4 717 aa16.12■□□□□ 0.17
LINC00538-201ENST00000626109 UGGT1Q9NYU2 1555 aa16.12■□□□□ 0.17
LINC00538-201ENST00000626109 CLTCL1P53675 1640 aa16.12■□□□□ 0.17
LINC00538-201ENST00000626109 ZNF428Q96B54 188 aa16.11■□□□□ 0.17
LINC00538-201ENST00000626109 PIK3C2BO00750 1634 aa16.1■□□□□ 0.17
LINC00538-201ENST00000626109 NLRP1Q9C000 1473 aa16.1■□□□□ 0.17
LINC00538-201ENST00000626109 SIN3AQ96ST3 1273 aa16.09■□□□□ 0.17
LINC00538-201ENST00000626109 IDI1Q13907 227 aa16.08■□□□□ 0.16
LINC00538-201ENST00000626109 MYO3AQ8NEV4 1616 aa16.08■□□□□ 0.16
LINC00538-201ENST00000626109 RAD21O60216 631 aa16.07■□□□□ 0.16
LINC00538-201ENST00000626109 CHGAP10645 457 aaKnown RBP16.06■□□□□ 0.16
LINC00538-201ENST00000626109 KCTD17Q8N5Z5 321 aa16.06■□□□□ 0.16
LINC00538-201ENST00000626109 STAG3Q9UJ98 1225 aa16.06■□□□□ 0.16
LINC00538-201ENST00000626109 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.06■□□□□ 0.16
LINC00538-201ENST00000626109 KIF1BO60333 1816 aa16.05■□□□□ 0.16
LINC00538-201ENST00000626109 UHRF1BP1Q6BDS2 1440 aa16.05■□□□□ 0.16
LINC00538-201ENST00000626109 ADGRB3O60242 1522 aa16.05■□□□□ 0.16
LINC00538-201ENST00000626109 A2ML1A8K2U0 1454 aa16.04■□□□□ 0.16
LINC00538-201ENST00000626109 SENP3Q9H4L4 574 aaPredicted RBP16.04■□□□□ 0.16
LINC00538-201ENST00000626109 SETD1BQ9UPS6 1966 aaKnown RBP16.03■□□□□ 0.16
LINC00538-201ENST00000626109 CEP170BQ9Y4F5 1589 aaPredicted RBP16.03■□□□□ 0.16
LINC00538-201ENST00000626109 NEURL4Q96JN8 1562 aa16.03■□□□□ 0.16
LINC00538-201ENST00000626109 SPATA31E1Q6ZUB1 1445 aa16.02■□□□□ 0.16
LINC00538-201ENST00000626109 TONSLQ96HA7 1378 aa16.02■□□□□ 0.15
LINC00538-201ENST00000626109 KDM5AP29375 1690 aaKnown RBP16.02■□□□□ 0.15
LINC00538-201ENST00000626109 ZNF142P52746 1687 aaPredicted RBP16.02■□□□□ 0.15
LINC00538-201ENST00000626109 TMEM131LA2VDJ0 1609 aa16.02■□□□□ 0.15
LINC00538-201ENST00000626109 RGL3Q3MIN7 710 aa16■□□□□ 0.15
LINC00538-201ENST00000626109 ZNF326Q5BKZ1 582 aaKnown RBP16■□□□□ 0.15
LINC00538-201ENST00000626109 UBR1Q8IWV7 1749 aa16■□□□□ 0.15
LINC00538-201ENST00000626109 BCCIPQ9P287 314 aaKnown RBP eCLIP16■□□□□ 0.15
LINC00538-201ENST00000626109 THEMISQ8N1K5 641 aaPredicted RBP15.98■□□□□ 0.15
LINC00538-201ENST00000626109 FGD1P98174 961 aa15.97■□□□□ 0.15
LINC00538-201ENST00000626109 RPGRIP1LQ68CZ1 1315 aa15.97■□□□□ 0.15
LINC00538-201ENST00000626109 MYO5BQ9ULV0 1848 aa15.96■□□□□ 0.15
LINC00538-201ENST00000626109 RBM25P49756 843 aaKnown RBP15.96■□□□□ 0.15
LINC00538-201ENST00000626109 RGS22Q8NE09 1264 aa15.96■□□□□ 0.15
LINC00538-201ENST00000626109 MTMR7Q9Y216 660 aa15.96■□□□□ 0.15
LINC00538-201ENST00000626109 IFNLR1Q8IU57 520 aaPredicted RBP15.96■□□□□ 0.14
LINC00538-201ENST00000626109 L3MBTL2Q969R5 705 aa15.95■□□□□ 0.14
LINC00538-201ENST00000626109 TMEM2Q9UHN6 1383 aa15.94■□□□□ 0.14
LINC00538-201ENST00000626109 RIMS2Q9UQ26 1411 aa15.94■□□□□ 0.14
LINC00538-201ENST00000626109 NEXMIFQ5QGS0 1516 aa15.94■□□□□ 0.14
LINC00538-201ENST00000626109 HDGFP51858 240 aaKnown RBP15.94■□□□□ 0.14
LINC00538-201ENST00000626109 DCAF11Q8TEB1 546 aa15.94■□□□□ 0.14
LINC00538-201ENST00000626109 LMTK3Q96Q04 1460 aa15.93■□□□□ 0.14
LINC00538-201ENST00000626109 NEUROD2Q15784 382 aa15.93■□□□□ 0.14
LINC00538-201ENST00000626109 SLIT1O75093 1534 aa15.93■□□□□ 0.14
LINC00538-201ENST00000626109 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.92■□□□□ 0.14
LINC00538-201ENST00000626109 ARHGAP23Q9P227 1491 aa15.92■□□□□ 0.14
LINC00538-201ENST00000626109 ZFYVE9O95405 1425 aa15.92■□□□□ 0.14
LINC00538-201ENST00000626109 STAC3Q96MF2 364 aa15.92■□□□□ 0.14
LINC00538-201ENST00000626109 IFT172Q9UG01 1749 aa15.92■□□□□ 0.14
LINC00538-201ENST00000626109 PPLO60437 1756 aa15.91■□□□□ 0.14
LINC00538-201ENST00000626109 MYOM2P54296 1465 aa15.91■□□□□ 0.14
LINC00538-201ENST00000626109 PPP1R15AO75807 674 aaPredicted RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms