RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 REC8O95072 547 aa17.26■□□□□ 0.35
CPSF1-212ENST00000616140 SKOR2Q2VWA4 1001 aaPredicted RBP17.26■□□□□ 0.35
CPSF1-212ENST00000616140 NBPF1Q3BBV0 1214 aa17.26■□□□□ 0.35
CPSF1-212ENST00000616140 TMEM132EQ6IEE7 984 aa17.25■□□□□ 0.35
CPSF1-212ENST00000616140 FYCO1Q9BQS8 1478 aa17.25■□□□□ 0.35
CPSF1-212ENST00000616140 NECTIN2Q92692 538 aa17.25■□□□□ 0.35
CPSF1-212ENST00000616140 CCDC9Q9Y3X0 531 aaKnown RBP17.25■□□□□ 0.35
CPSF1-212ENST00000616140 CFTRP13569 1480 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 EIF2S2P20042 333 aaKnown RBP17.24■□□□□ 0.35
CPSF1-212ENST00000616140 MTHFSP49914 203 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 NFKBIBQ15653 356 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 AQRO60306 1485 aaKnown RBP eCLIP17.24■□□□□ 0.358e-7■■■■■ 27.6
CPSF1-212ENST00000616140 HMOX1P09601 288 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 SF3A1Q15459 793 aaKnown RBP17.24■□□□□ 0.35
CPSF1-212ENST00000616140 TCP11L2Q8N4U5 519 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 KIF3AQ9Y496 699 aa17.24■□□□□ 0.35
CPSF1-212ENST00000616140 CFAP70Q5T0N1 1121 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 CCDC184Q52MB2 194 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 TPM4P67936 248 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 AFAP1Q8N556 730 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 C22orf23Q9BZE7 217 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 TOMM22Q9NS69 142 aa17.23■□□□□ 0.35
CPSF1-212ENST00000616140 CCDC34Q96HJ3 373 aa17.22■□□□□ 0.35
CPSF1-212ENST00000616140 DIAPH3Q9NSV4 1193 aa17.22■□□□□ 0.35
CPSF1-212ENST00000616140 ATP6V1DQ9Y5K8 247 aa17.22■□□□□ 0.35
CPSF1-212ENST00000616140 NCAPD3P42695 1498 aa17.22■□□□□ 0.35
CPSF1-212ENST00000616140 FKBP5Q13451 457 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-212ENST00000616140 ANO2Q9NQ90 1003 aa17.21■□□□□ 0.35
CPSF1-212ENST00000616140 PNISRQ8TF01 805 aaKnown RBP17.21■□□□□ 0.35
CPSF1-212ENST00000616140 PPP2R1AP30153 589 aa17.21■□□□□ 0.34
CPSF1-212ENST00000616140 CABP2Q9NPB3 220 aa17.2■□□□□ 0.34
CPSF1-212ENST00000616140 C9orf78Q9NZ63 289 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-212ENST00000616140 ERICH3Q5RHP9 1530 aa17.2■□□□□ 0.34
CPSF1-212ENST00000616140 GNAI1P63096 354 aa17.2■□□□□ 0.34
CPSF1-212ENST00000616140 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 CYB5RLQ6IPT4 315 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 AKNAQ7Z591 1439 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 H3BQV1 296 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 C1orf141Q5JVX7 400 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 IFFO2Q5TF58 517 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 HSP90AA2PQ14568 343 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-212ENST00000616140 PRXQ9BXM0 1461 aa17.19■□□□□ 0.34
CPSF1-212ENST00000616140 FAM184AQ8NB25 1140 aa17.18■□□□□ 0.34
CPSF1-212ENST00000616140 RSPH6AQ9H0K4 717 aa17.18■□□□□ 0.34
CPSF1-212ENST00000616140 AMER1Q5JTC6 1135 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-212ENST00000616140 ZKSCAN1P17029 563 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-212ENST00000616140 AAMPQ13685 434 aa17.17■□□□□ 0.34
CPSF1-212ENST00000616140 NEXNQ0ZGT2 675 aa17.16■□□□□ 0.34
CPSF1-212ENST00000616140 RASSF8Q8NHQ8 419 aa17.16■□□□□ 0.34
CPSF1-212ENST00000616140 RUFY2Q8WXA3 655 aa17.16■□□□□ 0.34
CPSF1-212ENST00000616140 CLSTN1O94985 981 aa17.15■□□□□ 0.34
CPSF1-212ENST00000616140 CREBRFQ8IUR6 639 aa17.15■□□□□ 0.34
CPSF1-212ENST00000616140 HFM1A2PYH4 1435 aa17.14■□□□□ 0.33
CPSF1-212ENST00000616140 BECN2A8MW95 431 aa17.14■□□□□ 0.33
CPSF1-212ENST00000616140 INTS3Q68E01 1043 aaKnown RBP17.14■□□□□ 0.33
CPSF1-212ENST00000616140 TSPYL4Q9UJ04 414 aa17.14■□□□□ 0.33
CPSF1-212ENST00000616140 FRAT2O75474 233 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-212ENST00000616140 GOLGA6L19H0YKK7 550 aa17.13■□□□□ 0.33
CPSF1-212ENST00000616140 BCAR3O75815 825 aa17.13■□□□□ 0.33
CPSF1-212ENST00000616140 IFIT2P09913 472 aaKnown RBP17.13■□□□□ 0.33
CPSF1-212ENST00000616140 MCTP1Q6DN14 999 aa17.13■□□□□ 0.33
CPSF1-212ENST00000616140 SLC12A5Q9H2X9 1139 aa17.13■□□□□ 0.33
CPSF1-212ENST00000616140 GTF2E1P29083 439 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-212ENST00000616140 ROCK1Q13464 1354 aa17.13■□□□□ 0.33
CPSF1-212ENST00000616140 NUCB2P80303 420 aa17.12■□□□□ 0.33
CPSF1-212ENST00000616140 EXOSC9Q06265 439 aaKnown RBP17.12■□□□□ 0.33
CPSF1-212ENST00000616140 PDE3AQ14432 1141 aa17.11■□□□□ 0.33
CPSF1-212ENST00000616140 PDZRN3Q9UPQ7 1066 aa17.11■□□□□ 0.33
CPSF1-212ENST00000616140 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.1■□□□□ 0.33
CPSF1-212ENST00000616140 BACH2Q9BYV9 841 aa17.1■□□□□ 0.33
CPSF1-212ENST00000616140 KIAA1107Q9UPP5 1409 aa17.1■□□□□ 0.33
CPSF1-212ENST00000616140 VPS37CA5D8V6 355 aaPredicted RBP17.1■□□□□ 0.33
CPSF1-212ENST00000616140 TTC5Q8N0Z6 440 aa17.09■□□□□ 0.33
CPSF1-212ENST00000616140 PRDM2Q13029 1718 aa17.09■□□□□ 0.33
CPSF1-212ENST00000616140 PRKAR2BP31323 418 aa17.09■□□□□ 0.33
CPSF1-212ENST00000616140 WDR97A6NE52 1622 aa17.09■□□□□ 0.33
CPSF1-212ENST00000616140 TSR2Q969E8 191 aaKnown RBP17.08■□□□□ 0.33
CPSF1-212ENST00000616140 CDC45O75419 566 aa17.08■□□□□ 0.32
CPSF1-212ENST00000616140 OSCARQ8IYS5 282 aa17.08■□□□□ 0.32
CPSF1-212ENST00000616140 G3BP1Q13283 466 aaKnown RBP eCLIP17.07■□□□□ 0.32
CPSF1-212ENST00000616140 CPLX2Q6PUV4 134 aaKnown RBP17.07■□□□□ 0.32
CPSF1-212ENST00000616140 DDX58O95786 925 aaKnown RBP17.06■□□□□ 0.32
CPSF1-212ENST00000616140 CHMP4CQ96CF2 233 aa17.06■□□□□ 0.32
CPSF1-212ENST00000616140 SMC3Q9UQE7 1217 aa17.06■□□□□ 0.32
CPSF1-212ENST00000616140 BICD2Q8TD16 824 aa17.06■□□□□ 0.32
CPSF1-212ENST00000616140 PSME1Q06323 249 aa17.06■□□□□ 0.32
CPSF1-212ENST00000616140 RNF20Q5VTR2 975 aa17.05■□□□□ 0.32
CPSF1-212ENST00000616140 PRG4Q92954 1404 aaPredicted RBP17.05■□□□□ 0.32
CPSF1-212ENST00000616140 GRIN2BQ13224 1484 aa17.05■□□□□ 0.32
CPSF1-212ENST00000616140 C9orf84Q5VXU9 1444 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 PES1O00541 588 aaKnown RBP17.04■□□□□ 0.32
CPSF1-212ENST00000616140 TRAK2O60296 914 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 FAM43AQ8N2R8 423 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 NUTM2GQ5VZR2 741 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 CPLX1O14810 134 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 TPM3P06753 285 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 HSP90AB4PQ58FF6 505 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 C1orf115Q9H7X2 142 aa17.04■□□□□ 0.32
CPSF1-212ENST00000616140 LRRFIP1Q32MZ4 808 aaKnown RBP17.03■□□□□ 0.32
CPSF1-212ENST00000616140 UBTFL1P0CB47 393 aaPredicted RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms