RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 ZNF326Q5BKZ1 582 aaKnown RBP28.63■■■□□ 2.17
UPF1-212ENST00000601689 KIF1BO60333 1816 aa28.62■■■□□ 2.17
UPF1-212ENST00000601689 RIMS2Q9UQ26 1411 aa28.61■■■□□ 2.17
UPF1-212ENST00000601689 HRCP23327 699 aa28.61■■■□□ 2.17
UPF1-212ENST00000601689 LTBP4Q8N2S1 1624 aa28.6■■■□□ 2.17
UPF1-212ENST00000601689 CPS1P31327 1500 aa28.58■■■□□ 2.17
UPF1-212ENST00000601689 IQSEC2Q5JU85 1478 aa28.57■■■□□ 2.16
UPF1-212ENST00000601689 ZFYVE9O95405 1425 aa28.55■■■□□ 2.16
UPF1-212ENST00000601689 ILDR1Q86SU0 546 aaPredicted RBP28.55■■■□□ 2.16
UPF1-212ENST00000601689 CLTCL1P53675 1640 aa28.54■■■□□ 2.16
UPF1-212ENST00000601689 PLEKHG1Q9ULL1 1385 aa28.53■■■□□ 2.16
UPF1-212ENST00000601689 FOXD1Q16676 465 aa28.53■■■□□ 2.16
UPF1-212ENST00000601689 CCDC144AA2RUR9 1427 aa28.52■■■□□ 2.16
UPF1-212ENST00000601689 SLC26A8Q96RN1 970 aa28.5■■■□□ 2.15
UPF1-212ENST00000601689 NUTM2DQ5VT03 806 aaPredicted RBP28.49■■■□□ 2.15
UPF1-212ENST00000601689 RPGRIP1LQ68CZ1 1315 aa28.46■■■□□ 2.15
UPF1-212ENST00000601689 VGFO15240 615 aaPredicted RBP28.44■■■□□ 2.14
UPF1-212ENST00000601689 SENP3Q9H4L4 574 aaPredicted RBP28.44■■■□□ 2.14
UPF1-212ENST00000601689 TBX22Q9Y458 520 aa28.44■■■□□ 2.14
UPF1-212ENST00000601689 KCNA6P17658 529 aa28.43■■■□□ 2.14
UPF1-212ENST00000601689 DIP2AQ14689 1571 aa28.4■■■□□ 2.14
UPF1-212ENST00000601689 UBAP1LF5GYI3 381 aa28.38■■■□□ 2.13
UPF1-212ENST00000601689 TOM1O60784 492 aa28.38■■■□□ 2.13
UPF1-212ENST00000601689 TRIM26Q12899 539 aaPredicted RBP28.37■■■□□ 2.13
UPF1-212ENST00000601689 STRCP1A6NGW2 1772 aa28.37■■■□□ 2.13
UPF1-212ENST00000601689 RGL3Q3MIN7 710 aa28.36■■■□□ 2.13
UPF1-212ENST00000601689 NEXMIFQ5QGS0 1516 aa28.36■■■□□ 2.13
UPF1-212ENST00000601689 PIK3R4Q99570 1358 aa28.36■■■□□ 2.13
UPF1-212ENST00000601689 PROSER2Q86WR7 435 aaPredicted RBP28.34■■■□□ 2.13
UPF1-212ENST00000601689 LRRC7Q96NW7 1537 aa28.33■■■□□ 2.13
UPF1-212ENST00000601689 CHD2O14647 1828 aaKnown RBP28.32■■■□□ 2.12
UPF1-212ENST00000601689 ADAMTS13Q76LX8 1427 aa28.31■■■□□ 2.12
UPF1-212ENST00000601689 NKTRP30414 1462 aaKnown RBP28.31■■■□□ 2.12
UPF1-212ENST00000601689 SETBP1Q9Y6X0 1596 aa28.31■■■□□ 2.12
UPF1-212ENST00000601689 PPLO60437 1756 aa28.3■■■□□ 2.12
UPF1-212ENST00000601689 ANKRD30BQ9BXX2 1392 aa28.3■■■□□ 2.12
UPF1-212ENST00000601689 NWD1Q149M9 1564 aa28.28■■■□□ 2.12
UPF1-212ENST00000601689 SCAF1Q9H7N4 1312 aaKnown RBP28.26■■■□□ 2.11
UPF1-212ENST00000601689 SPATA31E1Q6ZUB1 1445 aa28.26■■■□□ 2.11
UPF1-212ENST00000601689 AMOTL2Q9Y2J4 779 aa28.24■■■□□ 2.11
UPF1-212ENST00000601689 TMEM94Q12767 1356 aa28.24■■■□□ 2.11
UPF1-212ENST00000601689 C14orf37Q86TY3 774 aa28.23■■■□□ 2.11
UPF1-212ENST00000601689 NRXN3Q9Y4C0 1643 aa28.21■■■□□ 2.11
UPF1-212ENST00000601689 PIP4K2BP78356 416 aa28.21■■■□□ 2.11
UPF1-212ENST00000601689 MSH6P52701 1360 aa28.2■■■□□ 2.1
UPF1-212ENST00000601689 IFT172Q9UG01 1749 aa28.18■■■□□ 2.1
UPF1-212ENST00000601689 NCOA3Q9Y6Q9 1424 aa28.18■■■□□ 2.1
UPF1-212ENST00000601689 STAC3Q96MF2 364 aa28.17■■■□□ 2.1
UPF1-212ENST00000601689 XIRP1Q702N8 1843 aaKnown RBP28.17■■■□□ 2.1
UPF1-212ENST00000601689 ALKQ9UM73 1620 aa28.15■■■□□ 2.1
UPF1-212ENST00000601689 ADGRF5Q8IZF2 1346 aa28.15■■■□□ 2.1
UPF1-212ENST00000601689 METP08581 1390 aa28.14■■■□□ 2.1
UPF1-212ENST00000601689 RBM33Q96EV2 1170 aaKnown RBP28.14■■■□□ 2.1
UPF1-212ENST00000601689 PTPRUQ92729 1446 aa28.1■■■□□ 2.09
UPF1-212ENST00000601689 DCAF11Q8TEB1 546 aa28.09■■■□□ 2.09
UPF1-212ENST00000601689 C19orf44Q9H6X5 657 aa28.09■■■□□ 2.09
UPF1-212ENST00000601689 XRN1Q8IZH2 1706 aaKnown RBP28.09■■■□□ 2.09
UPF1-212ENST00000601689 MYOM2P54296 1465 aa28.08■■■□□ 2.09
UPF1-212ENST00000601689 ATF3P18847 181 aa28.08■■■□□ 2.09
UPF1-212ENST00000601689 CADPS2Q86UW7 1296 aa28.07■■■□□ 2.08
UPF1-212ENST00000601689 KDM2AQ9Y2K7 1162 aa28.06■■■□□ 2.08
UPF1-212ENST00000601689 PIK3C2GO75747 1445 aa28.06■■■□□ 2.08
UPF1-212ENST00000601689 SETD1AO15047 1707 aaKnown RBP28.06■■■□□ 2.08
UPF1-212ENST00000601689 LAMC1P11047 1609 aa28.03■■■□□ 2.08
UPF1-212ENST00000601689 C14orf93Q9H972 538 aaKnown RBP28.02■■■□□ 2.08
UPF1-212ENST00000601689 PTCH1Q13635 1447 aa28.01■■■□□ 2.07
UPF1-212ENST00000601689 SLAIN2Q9P270 581 aa28■■■□□ 2.07
UPF1-212ENST00000601689 DHX57Q6P158 1386 aaKnown RBP27.99■■■□□ 2.07
UPF1-212ENST00000601689 NRXN1Q9ULB1 1477 aa27.99■■■□□ 2.07
UPF1-212ENST00000601689 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.98■■■□□ 2.07
UPF1-212ENST00000601689 STK26Q9P289 416 aa27.98■■■□□ 2.07
UPF1-212ENST00000601689 DCCP43146 1447 aa27.97■■■□□ 2.07
UPF1-212ENST00000601689 FAM135BQ49AJ0 1406 aa27.97■■■□□ 2.07
UPF1-212ENST00000601689 CFAP70Q5T0N1 1121 aa27.96■■■□□ 2.07
UPF1-212ENST00000601689 TMEM132EQ6IEE7 984 aa27.96■■■□□ 2.07
UPF1-212ENST00000601689 LRPPRCP42704 1394 aaKnown RBP27.96■■■□□ 2.07
UPF1-212ENST00000601689 HSPA1LP34931 641 aa27.95■■■□□ 2.06
UPF1-212ENST00000601689 PRAG1Q86YV5 1406 aa27.94■■■□□ 2.06
UPF1-212ENST00000601689 NEUROD1Q13562 356 aa27.93■■■□□ 2.06
UPF1-212ENST00000601689 ABCC11Q96J66 1382 aa27.93■■■□□ 2.06
UPF1-212ENST00000601689 ADGRL3Q9HAR2 1447 aa27.92■■■□□ 2.06
UPF1-212ENST00000601689 ROBO2Q9HCK4 1378 aa27.92■■■□□ 2.06
UPF1-212ENST00000601689 YTHDC2Q9H6S0 1430 aaKnown RBP27.92■■■□□ 2.06
UPF1-212ENST00000601689 KNDC1Q76NI1 1749 aa27.89■■■□□ 2.06
UPF1-212ENST00000601689 ROBO1Q9Y6N7 1651 aa27.89■■■□□ 2.06
UPF1-212ENST00000601689 TECPR2O15040 1411 aa27.89■■■□□ 2.06
UPF1-212ENST00000601689 SIRT1Q96EB6 747 aa27.88■■■□□ 2.05
UPF1-212ENST00000601689 SIN3AQ96ST3 1273 aa27.87■■■□□ 2.05
UPF1-212ENST00000601689 PCGF6Q9BYE7 350 aa27.87■■■□□ 2.05
UPF1-212ENST00000601689 NALCNQ8IZF0 1738 aa27.86■■■□□ 2.05
UPF1-212ENST00000601689 ASXL1Q8IXJ9 1541 aa27.84■■■□□ 2.05
UPF1-212ENST00000601689 POGKQ9P215 609 aa27.84■■■□□ 2.05
UPF1-212ENST00000601689 WAPLQ7Z5K2 1190 aa27.82■■■□□ 2.04
UPF1-212ENST00000601689 L3MBTL2Q969R5 705 aa27.81■■■□□ 2.04
UPF1-212ENST00000601689 TRAK1Q9UPV9 953 aa27.79■■■□□ 2.04
UPF1-212ENST00000601689 KIAA1210Q9ULL0 1709 aa27.78■■■□□ 2.04
UPF1-212ENST00000601689 MST1RQ04912 1400 aa27.78■■■□□ 2.04
UPF1-212ENST00000601689 PRAM1Q96QH2 718 aa27.77■■■□□ 2.04
UPF1-212ENST00000601689 PHLPP1O60346 1717 aa27.77■■■□□ 2.04
UPF1-212ENST00000601689 DLC1Q96QB1 1528 aa27.77■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms