RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 SENP3Q9H4L4 574 aaPredicted RBP29.69■■■□□ 2.34
SSBP4-210ENST00000601444 IQGAP1P46940 1657 aa29.68■■■□□ 2.34
SSBP4-210ENST00000601444 ZNF326Q5BKZ1 582 aaKnown RBP29.64■■■□□ 2.34
SSBP4-210ENST00000601444 PPP1R15AO75807 674 aaPredicted RBP29.62■■■□□ 2.33
SSBP4-210ENST00000601444 LTBP4Q8N2S1 1624 aa29.62■■■□□ 2.33
SSBP4-210ENST00000601444 HDGFP51858 240 aaKnown RBP29.61■■■□□ 2.33
SSBP4-210ENST00000601444 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.6■■■□□ 2.33
SSBP4-210ENST00000601444 CCDC144AA2RUR9 1427 aa29.6■■■□□ 2.33
SSBP4-210ENST00000601444 CERKQ8TCT0 537 aa29.59■■■□□ 2.33
SSBP4-210ENST00000601444 BCANQ96GW7 911 aa29.59■■■□□ 2.33
SSBP4-210ENST00000601444 SLC26A8Q96RN1 970 aa29.59■■■□□ 2.33
SSBP4-210ENST00000601444 KIF1BO60333 1816 aa29.58■■■□□ 2.33
SSBP4-210ENST00000601444 PLEKHG1Q9ULL1 1385 aa29.56■■■□□ 2.32
SSBP4-210ENST00000601444 ANKRD30BQ9BXX2 1392 aa29.54■■■□□ 2.32
SSBP4-210ENST00000601444 NEXMIFQ5QGS0 1516 aa29.52■■■□□ 2.32
SSBP4-210ENST00000601444 RGL3Q3MIN7 710 aa29.52■■■□□ 2.32
SSBP4-210ENST00000601444 SPATA31E1Q6ZUB1 1445 aa29.5■■■□□ 2.31
SSBP4-210ENST00000601444 STRCP1A6NGW2 1772 aa29.47■■■□□ 2.31
SSBP4-210ENST00000601444 ADAMTS13Q76LX8 1427 aa29.46■■■□□ 2.31
SSBP4-210ENST00000601444 RPGRIP1LQ68CZ1 1315 aa29.45■■■□□ 2.31
SSBP4-210ENST00000601444 TBX22Q9Y458 520 aa29.43■■■□□ 2.3
SSBP4-210ENST00000601444 CPS1P31327 1500 aa29.41■■■□□ 2.3
SSBP4-210ENST00000601444 VGFO15240 615 aaPredicted RBP29.41■■■□□ 2.3
SSBP4-210ENST00000601444 NRXN3Q9Y4C0 1643 aa29.4■■■□□ 2.3
SSBP4-210ENST00000601444 KCNA6P17658 529 aa29.39■■■□□ 2.3
SSBP4-210ENST00000601444 PPLO60437 1756 aa29.39■■■□□ 2.29
SSBP4-210ENST00000601444 SETBP1Q9Y6X0 1596 aa29.38■■■□□ 2.29
SSBP4-210ENST00000601444 ADGRF5Q8IZF2 1346 aa29.37■■■□□ 2.29
SSBP4-210ENST00000601444 PCGF6Q9BYE7 350 aa29.36■■■□□ 2.29
SSBP4-210ENST00000601444 LRRC7Q96NW7 1537 aa29.35■■■□□ 2.29
SSBP4-210ENST00000601444 ILDR1Q86SU0 546 aaPredicted RBP29.35■■■□□ 2.29
SSBP4-210ENST00000601444 FBXO41Q8TF61 875 aa29.35■■■□□ 2.29
SSBP4-210ENST00000601444 DHX57Q6P158 1386 aaKnown RBP29.34■■■□□ 2.29
SSBP4-210ENST00000601444 DIP2AQ14689 1571 aa29.34■■■□□ 2.29
SSBP4-210ENST00000601444 METP08581 1390 aa29.32■■■□□ 2.28
SSBP4-210ENST00000601444 RBM33Q96EV2 1170 aaKnown RBP29.32■■■□□ 2.28
SSBP4-210ENST00000601444 IFT172Q9UG01 1749 aa29.31■■■□□ 2.28
SSBP4-210ENST00000601444 IQSEC2Q5JU85 1478 aa29.31■■■□□ 2.28
SSBP4-210ENST00000601444 PTPRUQ92729 1446 aa29.3■■■□□ 2.28
SSBP4-210ENST00000601444 NWD1Q149M9 1564 aa29.3■■■□□ 2.28
SSBP4-210ENST00000601444 CHD2O14647 1828 aaKnown RBP29.29■■■□□ 2.28
SSBP4-210ENST00000601444 PROSER2Q86WR7 435 aaPredicted RBP29.28■■■□□ 2.28
SSBP4-210ENST00000601444 PIK3R4Q99570 1358 aa29.27■■■□□ 2.28
SSBP4-210ENST00000601444 AMOTL2Q9Y2J4 779 aa29.27■■■□□ 2.28
SSBP4-210ENST00000601444 SIN3AQ96ST3 1273 aa29.26■■■□□ 2.27
SSBP4-210ENST00000601444 ALKQ9UM73 1620 aa29.26■■■□□ 2.27
SSBP4-210ENST00000601444 TMEM94Q12767 1356 aa29.25■■■□□ 2.27
SSBP4-210ENST00000601444 NKTRP30414 1462 aaKnown RBP29.23■■■□□ 2.27
SSBP4-210ENST00000601444 DCAF11Q8TEB1 546 aa29.23■■■□□ 2.27
SSBP4-210ENST00000601444 KDM2AQ9Y2K7 1162 aa29.23■■■□□ 2.27
SSBP4-210ENST00000601444 UBAP1LF5GYI3 381 aa29.22■■■□□ 2.27
SSBP4-210ENST00000601444 SETD1AO15047 1707 aaKnown RBP29.22■■■□□ 2.27
SSBP4-210ENST00000601444 PIK3C2GO75747 1445 aa29.21■■■□□ 2.27
SSBP4-210ENST00000601444 XIRP1Q702N8 1843 aaKnown RBP29.21■■■□□ 2.27
SSBP4-210ENST00000601444 MYOM2P54296 1465 aa29.2■■■□□ 2.26
SSBP4-210ENST00000601444 NRXN1Q9ULB1 1477 aa29.19■■■□□ 2.26
SSBP4-210ENST00000601444 NEUROD1Q13562 356 aa29.18■■■□□ 2.26
SSBP4-210ENST00000601444 XRN1Q8IZH2 1706 aaKnown RBP29.16■■■□□ 2.26
SSBP4-210ENST00000601444 CFAP70Q5T0N1 1121 aa29.15■■■□□ 2.26
SSBP4-210ENST00000601444 TMEM132EQ6IEE7 984 aa29.15■■■□□ 2.26
SSBP4-210ENST00000601444 C14orf93Q9H972 538 aaKnown RBP29.14■■■□□ 2.26
SSBP4-210ENST00000601444 TOM1O60784 492 aa29.12■■■□□ 2.25
SSBP4-210ENST00000601444 ASXL1Q8IXJ9 1541 aa29.1■■■□□ 2.25
SSBP4-210ENST00000601444 PIP4K2BP78356 416 aa29.1■■■□□ 2.25
SSBP4-210ENST00000601444 STK26Q9P289 416 aa29.09■■■□□ 2.25
SSBP4-210ENST00000601444 C14orf37Q86TY3 774 aa29.08■■■□□ 2.25
SSBP4-210ENST00000601444 L3MBTL2Q969R5 705 aa29.08■■■□□ 2.25
SSBP4-210ENST00000601444 STAC3Q96MF2 364 aa29.07■■■□□ 2.24
SSBP4-210ENST00000601444 ROBO2Q9HCK4 1378 aa29.07■■■□□ 2.24
SSBP4-210ENST00000601444 SCAF1Q9H7N4 1312 aaKnown RBP29.06■■■□□ 2.24
SSBP4-210ENST00000601444 MSH6P52701 1360 aa29.05■■■□□ 2.24
SSBP4-210ENST00000601444 NCOA3Q9Y6Q9 1424 aa29.04■■■□□ 2.24
SSBP4-210ENST00000601444 LRPPRCP42704 1394 aaKnown RBP29.03■■■□□ 2.24
SSBP4-210ENST00000601444 PTCH1Q13635 1447 aa29.02■■■□□ 2.24
SSBP4-210ENST00000601444 C19orf44Q9H6X5 657 aa29.01■■■□□ 2.23
SSBP4-210ENST00000601444 PRAG1Q86YV5 1406 aa29.01■■■□□ 2.23
SSBP4-210ENST00000601444 YTHDC2Q9H6S0 1430 aaKnown RBP29.01■■■□□ 2.23
SSBP4-210ENST00000601444 LAMC1P11047 1609 aa29■■■□□ 2.23
SSBP4-210ENST00000601444 ABCC11Q96J66 1382 aa28.99■■■□□ 2.23
SSBP4-210ENST00000601444 WAPLQ7Z5K2 1190 aa28.98■■■□□ 2.23
SSBP4-210ENST00000601444 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.97■■■□□ 2.23
SSBP4-210ENST00000601444 ADGRB1O14514 1584 aa28.96■■■□□ 2.23
SSBP4-210ENST00000601444 TECPR2O15040 1411 aa28.96■■■□□ 2.23
SSBP4-210ENST00000601444 PLEKHH1Q9ULM0 1364 aa28.95■■■□□ 2.22
SSBP4-210ENST00000601444 ATF3P18847 181 aa28.94■■■□□ 2.22
SSBP4-210ENST00000601444 SLAIN2Q9P270 581 aa28.94■■■□□ 2.22
SSBP4-210ENST00000601444 ADGRL3Q9HAR2 1447 aa28.93■■■□□ 2.22
SSBP4-210ENST00000601444 CADPS2Q86UW7 1296 aa28.92■■■□□ 2.22
SSBP4-210ENST00000601444 NALCNQ8IZF0 1738 aa28.91■■■□□ 2.22
SSBP4-210ENST00000601444 NBPF1Q3BBV0 1214 aa28.91■■■□□ 2.22
SSBP4-210ENST00000601444 TRAK1Q9UPV9 953 aa28.91■■■□□ 2.22
SSBP4-210ENST00000601444 KNDC1Q76NI1 1749 aa28.91■■■□□ 2.22
SSBP4-210ENST00000601444 HSPA1LP34931 641 aa28.89■■■□□ 2.22
SSBP4-210ENST00000601444 TONSLQ96HA7 1378 aa28.88■■■□□ 2.21
SSBP4-210ENST00000601444 SIRT1Q96EB6 747 aa28.88■■■□□ 2.21
SSBP4-210ENST00000601444 PRAM1Q96QH2 718 aa28.87■■■□□ 2.21
SSBP4-210ENST00000601444 DCCP43146 1447 aa28.86■■■□□ 2.21
SSBP4-210ENST00000601444 FAM135BQ49AJ0 1406 aa28.86■■■□□ 2.21
SSBP4-210ENST00000601444 SAFB2Q14151 953 aaKnown RBP eCLIP28.85■■■□□ 2.21
SSBP4-210ENST00000601444 NBPF8Q3BBV2 869 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms