RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 IQSEC2Q5JU85 1478 aa28.97■■■□□ 2.23
SHKBP1-214ENST00000597396 MED14O60244 1454 aa28.96■■■□□ 2.23
SHKBP1-214ENST00000597396 CCDC144AA2RUR9 1427 aa28.95■■■□□ 2.23
SHKBP1-214ENST00000597396 NPHP4O75161 1426 aaPredicted RBP28.95■■■□□ 2.23
SHKBP1-214ENST00000597396 LTKP29376 864 aa28.94■■■□□ 2.22
SHKBP1-214ENST00000597396 RIMS2Q9UQ26 1411 aa28.94■■■□□ 2.22
SHKBP1-214ENST00000597396 HDGFP51858 240 aaKnown RBP28.91■■■□□ 2.22
SHKBP1-214ENST00000597396 ZNF326Q5BKZ1 582 aaKnown RBP28.91■■■□□ 2.22
SHKBP1-214ENST00000597396 ZFYVE9O95405 1425 aa28.91■■■□□ 2.22
SHKBP1-214ENST00000597396 PPP1R15AO75807 674 aaPredicted RBP28.88■■■□□ 2.21
SHKBP1-214ENST00000597396 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.88■■■□□ 2.21
SHKBP1-214ENST00000597396 ANKRD30BQ9BXX2 1392 aa28.84■■■□□ 2.21
SHKBP1-214ENST00000597396 UBAP1LF5GYI3 381 aa28.83■■■□□ 2.21
SHKBP1-214ENST00000597396 NUTM2DQ5VT03 806 aaPredicted RBP28.83■■■□□ 2.21
SHKBP1-214ENST00000597396 BCANQ96GW7 911 aa28.83■■■□□ 2.21
SHKBP1-214ENST00000597396 NEXMIFQ5QGS0 1516 aa28.82■■■□□ 2.2
SHKBP1-214ENST00000597396 PPLO60437 1756 aa28.8■■■□□ 2.2
SHKBP1-214ENST00000597396 PLEKHG1Q9ULL1 1385 aa28.8■■■□□ 2.2
SHKBP1-214ENST00000597396 PCGF6Q9BYE7 350 aa28.8■■■□□ 2.2
SHKBP1-214ENST00000597396 DISP3Q9P2K9 1392 aa28.79■■■□□ 2.2
SHKBP1-214ENST00000597396 SENP3Q9H4L4 574 aaPredicted RBP28.79■■■□□ 2.2
SHKBP1-214ENST00000597396 SPATA31E1Q6ZUB1 1445 aa28.77■■■□□ 2.2
SHKBP1-214ENST00000597396 RGL3Q3MIN7 710 aa28.76■■■□□ 2.19
SHKBP1-214ENST00000597396 RPGRIP1LQ68CZ1 1315 aa28.75■■■□□ 2.19
SHKBP1-214ENST00000597396 IFT172Q9UG01 1749 aa28.75■■■□□ 2.19
SHKBP1-214ENST00000597396 SLC26A8Q96RN1 970 aa28.73■■■□□ 2.19
SHKBP1-214ENST00000597396 DHX57Q6P158 1386 aaKnown RBP28.71■■■□□ 2.19
SHKBP1-214ENST00000597396 CPS1P31327 1500 aa28.7■■■□□ 2.19
SHKBP1-214ENST00000597396 DIP2AQ14689 1571 aa28.7■■■□□ 2.18
SHKBP1-214ENST00000597396 STRCP1A6NGW2 1772 aa28.7■■■□□ 2.18
SHKBP1-214ENST00000597396 VGFO15240 615 aaPredicted RBP28.69■■■□□ 2.18
SHKBP1-214ENST00000597396 SETBP1Q9Y6X0 1596 aa28.68■■■□□ 2.18
SHKBP1-214ENST00000597396 NRXN3Q9Y4C0 1643 aa28.68■■■□□ 2.18
SHKBP1-214ENST00000597396 ADAMTS13Q76LX8 1427 aa28.66■■■□□ 2.18
SHKBP1-214ENST00000597396 CHD2O14647 1828 aaKnown RBP28.64■■■□□ 2.18
SHKBP1-214ENST00000597396 SCAF1Q9H7N4 1312 aaKnown RBP28.64■■■□□ 2.17
SHKBP1-214ENST00000597396 TBX22Q9Y458 520 aa28.63■■■□□ 2.17
SHKBP1-214ENST00000597396 TOM1O60784 492 aa28.6■■■□□ 2.17
SHKBP1-214ENST00000597396 PIP4K2BP78356 416 aa28.6■■■□□ 2.17
SHKBP1-214ENST00000597396 ILDR2Q71H61 639 aa28.6■■■□□ 2.17
SHKBP1-214ENST00000597396 NWD1Q149M9 1564 aa28.58■■■□□ 2.17
SHKBP1-214ENST00000597396 KCNA6P17658 529 aa28.57■■■□□ 2.16
SHKBP1-214ENST00000597396 ADGRF5Q8IZF2 1346 aa28.57■■■□□ 2.16
SHKBP1-214ENST00000597396 SETD1AO15047 1707 aaKnown RBP28.57■■■□□ 2.16
SHKBP1-214ENST00000597396 MYOM2P54296 1465 aa28.56■■■□□ 2.16
SHKBP1-214ENST00000597396 ALKQ9UM73 1620 aa28.55■■■□□ 2.16
SHKBP1-214ENST00000597396 PIK3R4Q99570 1358 aa28.55■■■□□ 2.16
SHKBP1-214ENST00000597396 SIN3AQ96ST3 1273 aa28.53■■■□□ 2.16
SHKBP1-214ENST00000597396 NKTRP30414 1462 aaKnown RBP28.52■■■□□ 2.16
SHKBP1-214ENST00000597396 HSPA1LP34931 641 aa28.51■■■□□ 2.15
SHKBP1-214ENST00000597396 DCAF11Q8TEB1 546 aa28.51■■■□□ 2.15
SHKBP1-214ENST00000597396 LRRC7Q96NW7 1537 aa28.51■■■□□ 2.15
SHKBP1-214ENST00000597396 XIRP1Q702N8 1843 aaKnown RBP28.5■■■□□ 2.15
SHKBP1-214ENST00000597396 NEUROD1Q13562 356 aa28.5■■■□□ 2.15
SHKBP1-214ENST00000597396 KDM2AQ9Y2K7 1162 aa28.5■■■□□ 2.15
SHKBP1-214ENST00000597396 PIK3C2GO75747 1445 aa28.5■■■□□ 2.15
SHKBP1-214ENST00000597396 METP08581 1390 aa28.49■■■□□ 2.15
SHKBP1-214ENST00000597396 NRXN1Q9ULB1 1477 aa28.48■■■□□ 2.15
SHKBP1-214ENST00000597396 LAMC1P11047 1609 aa28.48■■■□□ 2.15
SHKBP1-214ENST00000597396 XRN1Q8IZH2 1706 aaKnown RBP28.48■■■□□ 2.15
SHKBP1-214ENST00000597396 PTPRUQ92729 1446 aa28.47■■■□□ 2.15
SHKBP1-214ENST00000597396 PROSER2Q86WR7 435 aaPredicted RBP28.46■■■□□ 2.15
SHKBP1-214ENST00000597396 STAC3Q96MF2 364 aa28.46■■■□□ 2.15
SHKBP1-214ENST00000597396 AMOTL2Q9Y2J4 779 aa28.46■■■□□ 2.15
SHKBP1-214ENST00000597396 SOCS7O14512 581 aa28.42■■■□□ 2.14
SHKBP1-214ENST00000597396 TMEM94Q12767 1356 aa28.41■■■□□ 2.14
SHKBP1-214ENST00000597396 C14orf93Q9H972 538 aaKnown RBP28.39■■■□□ 2.14
SHKBP1-214ENST00000597396 ASXL1Q8IXJ9 1541 aa28.38■■■□□ 2.13
SHKBP1-214ENST00000597396 CFAP70Q5T0N1 1121 aa28.37■■■□□ 2.13
SHKBP1-214ENST00000597396 L3MBTL2Q969R5 705 aa28.37■■■□□ 2.13
SHKBP1-214ENST00000597396 RBM33Q96EV2 1170 aaKnown RBP28.37■■■□□ 2.13
SHKBP1-214ENST00000597396 KNDC1Q76NI1 1749 aa28.35■■■□□ 2.13
SHKBP1-214ENST00000597396 TMEM132EQ6IEE7 984 aa28.34■■■□□ 2.13
SHKBP1-214ENST00000597396 C14orf37Q86TY3 774 aa28.33■■■□□ 2.13
SHKBP1-214ENST00000597396 TONSLQ96HA7 1378 aa28.33■■■□□ 2.13
SHKBP1-214ENST00000597396 KIAA1210Q9ULL0 1709 aa28.32■■■□□ 2.12
SHKBP1-214ENST00000597396 STK26Q9P289 416 aa28.31■■■□□ 2.12
SHKBP1-214ENST00000597396 LRPPRCP42704 1394 aaKnown RBP28.31■■■□□ 2.12
SHKBP1-214ENST00000597396 PTCH1Q13635 1447 aa28.31■■■□□ 2.12
SHKBP1-214ENST00000597396 PRAG1Q86YV5 1406 aa28.3■■■□□ 2.12
SHKBP1-214ENST00000597396 YTHDC2Q9H6S0 1430 aaKnown RBP28.3■■■□□ 2.12
SHKBP1-214ENST00000597396 NCOA3Q9Y6Q9 1424 aa28.3■■■□□ 2.12
SHKBP1-214ENST00000597396 MSH6P52701 1360 aa28.3■■■□□ 2.12
SHKBP1-214ENST00000597396 CCER1Q8TC90 406 aaPredicted RBP28.3■■■□□ 2.12
SHKBP1-214ENST00000597396 CLSPNQ9HAW4 1339 aa28.29■■■□□ 2.12
SHKBP1-214ENST00000597396 MED1Q15648 1581 aaPredicted RBP28.28■■■□□ 2.12
SHKBP1-214ENST00000597396 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.27■■■□□ 2.12
SHKBP1-214ENST00000597396 ROBO2Q9HCK4 1378 aa28.26■■■□□ 2.12
SHKBP1-214ENST00000597396 ADGRB1O14514 1584 aa28.26■■■□□ 2.11
SHKBP1-214ENST00000597396 NALCNQ8IZF0 1738 aa28.26■■■□□ 2.11
SHKBP1-214ENST00000597396 TECPR2O15040 1411 aa28.26■■■□□ 2.11
SHKBP1-214ENST00000597396 ABCC11Q96J66 1382 aa28.25■■■□□ 2.11
SHKBP1-214ENST00000597396 TRPM1Q7Z4N2 1603 aa28.21■■■□□ 2.11
SHKBP1-214ENST00000597396 ADGRL3Q9HAR2 1447 aa28.2■■■□□ 2.11
SHKBP1-214ENST00000597396 C19orf44Q9H6X5 657 aa28.2■■■□□ 2.1
SHKBP1-214ENST00000597396 PHF23Q9BUL5 403 aaPredicted RBP28.18■■■□□ 2.1
SHKBP1-214ENST00000597396 DLC1Q96QB1 1528 aa28.18■■■□□ 2.1
SHKBP1-214ENST00000597396 ATF3P18847 181 aa28.17■■■□□ 2.1
SHKBP1-214ENST00000597396 FAM135BQ49AJ0 1406 aa28.17■■■□□ 2.1
SHKBP1-214ENST00000597396 WAPLQ7Z5K2 1190 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 121.2 ms