RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 ZFYVE9O95405 1425 aa37.97■■■■□ 3.67
TRIM28-204ENST00000594806 CCDC144AA2RUR9 1427 aa37.96■■■■□ 3.67
TRIM28-204ENST00000594806 RIMS2Q9UQ26 1411 aa37.96■■■■□ 3.67
TRIM28-204ENST00000594806 ZNF326Q5BKZ1 582 aaKnown RBP37.88■■■■□ 3.65
TRIM28-204ENST00000594806 PPP1R15AO75807 674 aaPredicted RBP37.87■■■■□ 3.65
TRIM28-204ENST00000594806 PLEKHG1Q9ULL1 1385 aa37.85■■■■□ 3.65
TRIM28-204ENST00000594806 ANKRD30BQ9BXX2 1392 aa37.84■■■■□ 3.65
TRIM28-204ENST00000594806 RPGRIP1LQ68CZ1 1315 aa37.84■■■■□ 3.65
TRIM28-204ENST00000594806 LTBP4Q8N2S1 1624 aa37.77■■■■□ 3.64
TRIM28-204ENST00000594806 ZNF335Q9H4Z2 1342 aaPredicted RBP37.77■■■■□ 3.64
TRIM28-204ENST00000594806 NEXMIFQ5QGS0 1516 aa37.77■■■■□ 3.64
TRIM28-204ENST00000594806 BCANQ96GW7 911 aa37.76■■■■□ 3.64
TRIM28-204ENST00000594806 SPATA31E1Q6ZUB1 1445 aa37.76■■■■□ 3.63
TRIM28-204ENST00000594806 VGFO15240 615 aaPredicted RBP37.73■■■■□ 3.63
TRIM28-204ENST00000594806 NUTM2DQ5VT03 806 aaPredicted RBP37.72■■■■□ 3.63
TRIM28-204ENST00000594806 CERKQ8TCT0 537 aa37.7■■■■□ 3.63
TRIM28-204ENST00000594806 TBX22Q9Y458 520 aa37.69■■■■□ 3.62
TRIM28-204ENST00000594806 CPS1P31327 1500 aa37.69■■■■□ 3.62
TRIM28-204ENST00000594806 PPLO60437 1756 aa37.68■■■■□ 3.62
TRIM28-204ENST00000594806 SLC26A8Q96RN1 970 aa37.68■■■■□ 3.62
TRIM28-204ENST00000594806 DIP2AQ14689 1571 aa37.68■■■■□ 3.62
TRIM28-204ENST00000594806 SETBP1Q9Y6X0 1596 aa37.65■■■■□ 3.62
TRIM28-204ENST00000594806 RGL3Q3MIN7 710 aa37.65■■■■□ 3.62
TRIM28-204ENST00000594806 ADAMTS13Q76LX8 1427 aa37.63■■■■□ 3.61
TRIM28-204ENST00000594806 IQSEC2Q5JU85 1478 aa37.63■■■■□ 3.61
TRIM28-204ENST00000594806 IFT172Q9UG01 1749 aa37.59■■■■□ 3.61
TRIM28-204ENST00000594806 PIK3R4Q99570 1358 aa37.59■■■■□ 3.61
TRIM28-204ENST00000594806 KCNA6P17658 529 aa37.59■■■■□ 3.61
TRIM28-204ENST00000594806 DHX57Q6P158 1386 aaKnown RBP37.57■■■■□ 3.61
TRIM28-204ENST00000594806 STRCP1A6NGW2 1772 aa37.57■■■■□ 3.6
TRIM28-204ENST00000594806 NRXN3Q9Y4C0 1643 aa37.57■■■■□ 3.6
TRIM28-204ENST00000594806 PCGF6Q9BYE7 350 aa37.55■■■■□ 3.6
TRIM28-204ENST00000594806 SENP3Q9H4L4 574 aaPredicted RBP37.54■■■■□ 3.6
TRIM28-204ENST00000594806 CHD2O14647 1828 aaKnown RBP37.54■■■■□ 3.6
TRIM28-204ENST00000594806 STAC3Q96MF2 364 aa37.53■■■■□ 3.6
TRIM28-204ENST00000594806 NWD1Q149M9 1564 aa37.52■■■■□ 3.6
TRIM28-204ENST00000594806 NKTRP30414 1462 aaKnown RBP37.48■■■■□ 3.59
TRIM28-204ENST00000594806 MYOM2P54296 1465 aa37.47■■■■□ 3.59
TRIM28-204ENST00000594806 ADGRF5Q8IZF2 1346 aa37.46■■■■□ 3.59
TRIM28-204ENST00000594806 LRRC7Q96NW7 1537 aa37.46■■■■□ 3.59
TRIM28-204ENST00000594806 ALKQ9UM73 1620 aa37.43■■■■□ 3.58
TRIM28-204ENST00000594806 FBXO41Q8TF61 875 aa37.42■■■■□ 3.58
TRIM28-204ENST00000594806 NRXN1Q9ULB1 1477 aa37.41■■■■□ 3.58
TRIM28-204ENST00000594806 PIK3C2GO75747 1445 aa37.41■■■■□ 3.58
TRIM28-204ENST00000594806 SETD1AO15047 1707 aaKnown RBP37.39■■■■□ 3.58
TRIM28-204ENST00000594806 METP08581 1390 aa37.39■■■■□ 3.58
TRIM28-204ENST00000594806 PROSER2Q86WR7 435 aaPredicted RBP37.38■■■■□ 3.57
TRIM28-204ENST00000594806 AMOTL2Q9Y2J4 779 aa37.38■■■■□ 3.57
TRIM28-204ENST00000594806 DCAF11Q8TEB1 546 aa37.37■■■■□ 3.57
TRIM28-204ENST00000594806 PTPRUQ92729 1446 aa37.35■■■■□ 3.57
TRIM28-204ENST00000594806 XRN1Q8IZH2 1706 aaKnown RBP37.33■■■■□ 3.57
TRIM28-204ENST00000594806 NCOA3Q9Y6Q9 1424 aa37.32■■■■□ 3.56
TRIM28-204ENST00000594806 TMEM94Q12767 1356 aa37.31■■■■□ 3.56
TRIM28-204ENST00000594806 C14orf93Q9H972 538 aaKnown RBP37.31■■■■□ 3.56
TRIM28-204ENST00000594806 LAMC1P11047 1609 aa37.31■■■■□ 3.56
TRIM28-204ENST00000594806 XIRP1Q702N8 1843 aaKnown RBP37.31■■■■□ 3.56
TRIM28-204ENST00000594806 SIN3AQ96ST3 1273 aa37.3■■■■□ 3.56
TRIM28-204ENST00000594806 KDM2AQ9Y2K7 1162 aa37.29■■■■□ 3.56
TRIM28-204ENST00000594806 PRAG1Q86YV5 1406 aa37.26■■■■□ 3.55
TRIM28-204ENST00000594806 TOM1O60784 492 aa37.25■■■■□ 3.55
TRIM28-204ENST00000594806 NEUROD1Q13562 356 aa37.25■■■■□ 3.55
TRIM28-204ENST00000594806 UBAP1LF5GYI3 381 aa37.23■■■■□ 3.55
TRIM28-204ENST00000594806 PTCH1Q13635 1447 aa37.2■■■■□ 3.55
TRIM28-204ENST00000594806 CFAP70Q5T0N1 1121 aa37.2■■■■□ 3.55
TRIM28-204ENST00000594806 ILDR1Q86SU0 546 aaPredicted RBP37.18■■■■□ 3.54
TRIM28-204ENST00000594806 L3MBTL2Q969R5 705 aa37.18■■■■□ 3.54
TRIM28-204ENST00000594806 LRPPRCP42704 1394 aaKnown RBP37.17■■■■□ 3.54
TRIM28-204ENST00000594806 MSH6P52701 1360 aa37.17■■■■□ 3.54
TRIM28-204ENST00000594806 CLSPNQ9HAW4 1339 aa37.17■■■■□ 3.54
TRIM28-204ENST00000594806 ABCC11Q96J66 1382 aa37.16■■■■□ 3.54
TRIM28-204ENST00000594806 RBM33Q96EV2 1170 aaKnown RBP37.15■■■■□ 3.54
TRIM28-204ENST00000594806 ASXL1Q8IXJ9 1541 aa37.15■■■■□ 3.54
TRIM28-204ENST00000594806 TECPR2O15040 1411 aa37.14■■■■□ 3.54
TRIM28-204ENST00000594806 TMEM132EQ6IEE7 984 aa37.14■■■■□ 3.54
TRIM28-204ENST00000594806 C14orf37Q86TY3 774 aa37.13■■■■□ 3.53
TRIM28-204ENST00000594806 YTHDC2Q9H6S0 1430 aaKnown RBP37.12■■■■□ 3.53
TRIM28-204ENST00000594806 C19orf44Q9H6X5 657 aa37.12■■■■□ 3.53
TRIM28-204ENST00000594806 KNDC1Q76NI1 1749 aa37.12■■■■□ 3.53
TRIM28-204ENST00000594806 KIAA1210Q9ULL0 1709 aa37.1■■■■□ 3.53
TRIM28-204ENST00000594806 ROBO2Q9HCK4 1378 aa37.09■■■■□ 3.53
TRIM28-204ENST00000594806 SIRT1Q96EB6 747 aa37.09■■■■□ 3.53
TRIM28-204ENST00000594806 TONSLQ96HA7 1378 aa37.07■■■■□ 3.53
TRIM28-204ENST00000594806 STK26Q9P289 416 aa37.07■■■■□ 3.52
TRIM28-204ENST00000594806 ADGRB1O14514 1584 aa37.07■■■■□ 3.52
TRIM28-204ENST00000594806 DCCP43146 1447 aa37.05■■■■□ 3.52
TRIM28-204ENST00000594806 CADPS2Q86UW7 1296 aa37.04■■■■□ 3.52
TRIM28-204ENST00000594806 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.04■■■■□ 3.52
TRIM28-204ENST00000594806 ADGRL3Q9HAR2 1447 aa37.03■■■■□ 3.52
TRIM28-204ENST00000594806 FAM135BQ49AJ0 1406 aa37.02■■■■□ 3.52
TRIM28-204ENST00000594806 ATF3P18847 181 aa37.01■■■■□ 3.52
TRIM28-204ENST00000594806 DLC1Q96QB1 1528 aa37■■■■□ 3.51
TRIM28-204ENST00000594806 PIP4K2BP78356 416 aa36.98■■■■□ 3.51
TRIM28-204ENST00000594806 SCAF1Q9H7N4 1312 aaKnown RBP36.96■■■■□ 3.51
TRIM28-204ENST00000594806 NALCNQ8IZF0 1738 aa36.96■■■■□ 3.51
TRIM28-204ENST00000594806 CCER1Q8TC90 406 aaPredicted RBP36.95■■■■□ 3.51
TRIM28-204ENST00000594806 SLAIN2Q9P270 581 aa36.95■■■■□ 3.51
TRIM28-204ENST00000594806 TIMELESSQ9UNS1 1208 aa36.94■■■■□ 3.5
TRIM28-204ENST00000594806 WAPLQ7Z5K2 1190 aa36.92■■■■□ 3.5
TRIM28-204ENST00000594806 TRAK1Q9UPV9 953 aa36.89■■■■□ 3.5
TRIM28-204ENST00000594806 TRPM1Q7Z4N2 1603 aa36.88■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms