RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF335Q9H4Z2 1342 aaPredicted RBP22.18■■□□□ 1.14
UPF1-202ENST00000594243 PPP1R15AO75807 674 aaPredicted RBP22.18■■□□□ 1.14
UPF1-202ENST00000594243 TRIM26Q12899 539 aaPredicted RBP22.18■■□□□ 1.14
UPF1-202ENST00000594243 ZNF326Q5BKZ1 582 aaKnown RBP22.18■■□□□ 1.14
UPF1-202ENST00000594243 ZFYVE9O95405 1425 aa22.17■■□□□ 1.14
UPF1-202ENST00000594243 CLTCL1P53675 1640 aa22.17■■□□□ 1.14
UPF1-202ENST00000594243 BCANQ96GW7 911 aa22.16■■□□□ 1.14
UPF1-202ENST00000594243 MYO5BQ9ULV0 1848 aa22.15■■□□□ 1.14
UPF1-202ENST00000594243 CCDC144AA2RUR9 1427 aa22.14■■□□□ 1.13
UPF1-202ENST00000594243 LTBP4Q8N2S1 1624 aa22.13■■□□□ 1.13
UPF1-202ENST00000594243 PLEKHG1Q9ULL1 1385 aa22.12■■□□□ 1.13
UPF1-202ENST00000594243 KIF1BO60333 1816 aa22.12■■□□□ 1.13
UPF1-202ENST00000594243 NUTM2DQ5VT03 806 aaPredicted RBP22.11■■□□□ 1.13
UPF1-202ENST00000594243 SLC26A8Q96RN1 970 aa22.1■■□□□ 1.13
UPF1-202ENST00000594243 RPGRIP1LQ68CZ1 1315 aa22.09■■□□□ 1.13
UPF1-202ENST00000594243 CPS1P31327 1500 aa22.06■■□□□ 1.12
UPF1-202ENST00000594243 VGFO15240 615 aaPredicted RBP22.06■■□□□ 1.12
UPF1-202ENST00000594243 TBX22Q9Y458 520 aa22.06■■□□□ 1.12
UPF1-202ENST00000594243 SENP3Q9H4L4 574 aaPredicted RBP22.05■■□□□ 1.12
UPF1-202ENST00000594243 IQSEC2Q5JU85 1478 aa22.03■■□□□ 1.12
UPF1-202ENST00000594243 ANKRD30BQ9BXX2 1392 aa22.03■■□□□ 1.12
UPF1-202ENST00000594243 RGL3Q3MIN7 710 aa22.03■■□□□ 1.12
UPF1-202ENST00000594243 NEXMIFQ5QGS0 1516 aa22.02■■□□□ 1.12
UPF1-202ENST00000594243 KCNA6P17658 529 aa22.02■■□□□ 1.12
UPF1-202ENST00000594243 SPATA31E1Q6ZUB1 1445 aa22■■□□□ 1.11
UPF1-202ENST00000594243 ADAMTS13Q76LX8 1427 aa21.98■■□□□ 1.11
UPF1-202ENST00000594243 DIP2AQ14689 1571 aa21.97■■□□□ 1.11
UPF1-202ENST00000594243 PIK3R4Q99570 1358 aa21.96■■□□□ 1.11
UPF1-202ENST00000594243 SETBP1Q9Y6X0 1596 aa21.95■■□□□ 1.11
UPF1-202ENST00000594243 STRCP1A6NGW2 1772 aa21.94■■□□□ 1.1
UPF1-202ENST00000594243 LRRC7Q96NW7 1537 aa21.94■■□□□ 1.1
UPF1-202ENST00000594243 PPLO60437 1756 aa21.92■■□□□ 1.1
UPF1-202ENST00000594243 PROSER2Q86WR7 435 aaPredicted RBP21.92■■□□□ 1.1
UPF1-202ENST00000594243 AMOTL2Q9Y2J4 779 aa21.9■■□□□ 1.1
UPF1-202ENST00000594243 NRXN3Q9Y4C0 1643 aa21.9■■□□□ 1.1
UPF1-202ENST00000594243 NWD1Q149M9 1564 aa21.9■■□□□ 1.1
UPF1-202ENST00000594243 NKTRP30414 1462 aaKnown RBP21.9■■□□□ 1.1
UPF1-202ENST00000594243 CHD2O14647 1828 aaKnown RBP21.9■■□□□ 1.1
UPF1-202ENST00000594243 UBAP1LF5GYI3 381 aa21.89■■□□□ 1.09
UPF1-202ENST00000594243 TOM1O60784 492 aa21.89■■□□□ 1.09
UPF1-202ENST00000594243 ADGRF5Q8IZF2 1346 aa21.88■■□□□ 1.09
UPF1-202ENST00000594243 STAC3Q96MF2 364 aa21.87■■□□□ 1.09
UPF1-202ENST00000594243 METP08581 1390 aa21.87■■□□□ 1.09
UPF1-202ENST00000594243 IFT172Q9UG01 1749 aa21.86■■□□□ 1.09
UPF1-202ENST00000594243 TMEM94Q12767 1356 aa21.86■■□□□ 1.09
UPF1-202ENST00000594243 ALKQ9UM73 1620 aa21.84■■□□□ 1.09
UPF1-202ENST00000594243 PTPRUQ92729 1446 aa21.84■■□□□ 1.09
UPF1-202ENST00000594243 DCAF11Q8TEB1 546 aa21.84■■□□□ 1.09
UPF1-202ENST00000594243 DHX57Q6P158 1386 aaKnown RBP21.84■■□□□ 1.09
UPF1-202ENST00000594243 NCOA3Q9Y6Q9 1424 aa21.82■■□□□ 1.08
UPF1-202ENST00000594243 RBM33Q96EV2 1170 aaKnown RBP21.82■■□□□ 1.08
UPF1-202ENST00000594243 MYOM2P54296 1465 aa21.82■■□□□ 1.08
UPF1-202ENST00000594243 PCGF6Q9BYE7 350 aa21.81■■□□□ 1.08
UPF1-202ENST00000594243 KDM2AQ9Y2K7 1162 aa21.81■■□□□ 1.08
UPF1-202ENST00000594243 PIK3C2GO75747 1445 aa21.8■■□□□ 1.08
UPF1-202ENST00000594243 NRXN1Q9ULB1 1477 aa21.78■■□□□ 1.08
UPF1-202ENST00000594243 MSH6P52701 1360 aa21.78■■□□□ 1.08
UPF1-202ENST00000594243 C14orf37Q86TY3 774 aa21.78■■□□□ 1.08
UPF1-202ENST00000594243 C14orf93Q9H972 538 aaKnown RBP21.78■■□□□ 1.08
UPF1-202ENST00000594243 XIRP1Q702N8 1843 aaKnown RBP21.78■■□□□ 1.08
UPF1-202ENST00000594243 PIP4K2BP78356 416 aa21.77■■□□□ 1.08
UPF1-202ENST00000594243 SETD1AO15047 1707 aaKnown RBP21.77■■□□□ 1.08
UPF1-202ENST00000594243 XRN1Q8IZH2 1706 aaKnown RBP21.76■■□□□ 1.07
UPF1-202ENST00000594243 SIN3AQ96ST3 1273 aa21.76■■□□□ 1.07
UPF1-202ENST00000594243 SCAF1Q9H7N4 1312 aaKnown RBP21.76■■□□□ 1.07
UPF1-202ENST00000594243 CFAP70Q5T0N1 1121 aa21.75■■□□□ 1.07
UPF1-202ENST00000594243 C19orf44Q9H6X5 657 aa21.75■■□□□ 1.07
UPF1-202ENST00000594243 NEUROD1Q13562 356 aa21.74■■□□□ 1.07
UPF1-202ENST00000594243 TMEM132EQ6IEE7 984 aa21.73■■□□□ 1.07
UPF1-202ENST00000594243 STK26Q9P289 416 aa21.71■■□□□ 1.07
UPF1-202ENST00000594243 PTCH1Q13635 1447 aa21.71■■□□□ 1.07
UPF1-202ENST00000594243 PRAG1Q86YV5 1406 aa21.71■■□□□ 1.07
UPF1-202ENST00000594243 LAMC1P11047 1609 aa21.7■■□□□ 1.06
UPF1-202ENST00000594243 ATF3P18847 181 aa21.7■■□□□ 1.06
UPF1-202ENST00000594243 CADPS2Q86UW7 1296 aa21.7■■□□□ 1.06
UPF1-202ENST00000594243 LRPPRCP42704 1394 aaKnown RBP21.7■■□□□ 1.06
UPF1-202ENST00000594243 ABCC11Q96J66 1382 aa21.69■■□□□ 1.06
UPF1-202ENST00000594243 ROBO2Q9HCK4 1378 aa21.69■■□□□ 1.06
UPF1-202ENST00000594243 DISP3Q9P2K9 1392 aa21.69■■□□□ 1.06
UPF1-202ENST00000594243 L3MBTL2Q969R5 705 aa21.68■■□□□ 1.06
UPF1-202ENST00000594243 SLAIN2Q9P270 581 aa21.68■■□□□ 1.06
UPF1-202ENST00000594243 YTHDC2Q9H6S0 1430 aaKnown RBP21.67■■□□□ 1.06
UPF1-202ENST00000594243 SIRT1Q96EB6 747 aa21.67■■□□□ 1.06
UPF1-202ENST00000594243 TECPR2O15040 1411 aa21.65■■□□□ 1.06
UPF1-202ENST00000594243 ASXL1Q8IXJ9 1541 aa21.65■■□□□ 1.06
UPF1-202ENST00000594243 DCCP43146 1447 aa21.64■■□□□ 1.06
UPF1-202ENST00000594243 FAM135BQ49AJ0 1406 aa21.63■■□□□ 1.05
UPF1-202ENST00000594243 ADGRL3Q9HAR2 1447 aa21.63■■□□□ 1.05
UPF1-202ENST00000594243 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.63■■□□□ 1.05
UPF1-202ENST00000594243 WAPLQ7Z5K2 1190 aa21.62■■□□□ 1.05
UPF1-202ENST00000594243 HSPA1LP34931 641 aa21.6■■□□□ 1.05
UPF1-202ENST00000594243 KNDC1Q76NI1 1749 aa21.6■■□□□ 1.05
UPF1-202ENST00000594243 ADGRB1O14514 1584 aa21.59■■□□□ 1.05
UPF1-202ENST00000594243 TRAK1Q9UPV9 953 aa21.59■■□□□ 1.05
UPF1-202ENST00000594243 TONSLQ96HA7 1378 aa21.59■■□□□ 1.05
UPF1-202ENST00000594243 POGKQ9P215 609 aa21.57■■□□□ 1.04
UPF1-202ENST00000594243 NALCNQ8IZF0 1738 aa21.56■■□□□ 1.04
UPF1-202ENST00000594243 ILDR2Q71H61 639 aa21.56■■□□□ 1.04
UPF1-202ENST00000594243 PRAM1Q96QH2 718 aa21.56■■□□□ 1.04
UPF1-202ENST00000594243 CLSPNQ9HAW4 1339 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms