RNA–Protein interactions for RNA: ENST00000590096.1

ATG4D-212, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 1,282 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-212ENST00000590096 LTKP29376 864 aa31.36■■■□□ 2.61
ATG4D-212ENST00000590096 HDGFP51858 240 aaKnown RBP31.35■■■□□ 2.61
ATG4D-212ENST00000590096 RIMS2Q9UQ26 1411 aa31.34■■■□□ 2.61
ATG4D-212ENST00000590096 IQGAP1P46940 1657 aa31.34■■■□□ 2.61
ATG4D-212ENST00000590096 ZNF326Q5BKZ1 582 aaKnown RBP31.33■■■□□ 2.61
ATG4D-212ENST00000590096 ZFYVE9O95405 1425 aa31.32■■■□□ 2.6
ATG4D-212ENST00000590096 PPP1R15AO75807 674 aaPredicted RBP31.3■■■□□ 2.6
ATG4D-212ENST00000590096 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.3■■■□□ 2.6
ATG4D-212ENST00000590096 ANKRD30BQ9BXX2 1392 aa31.25■■■□□ 2.59
ATG4D-212ENST00000590096 NUTM2DQ5VT03 806 aaPredicted RBP31.22■■■□□ 2.59
ATG4D-212ENST00000590096 BCANQ96GW7 911 aa31.22■■■□□ 2.59
ATG4D-212ENST00000590096 PLEKHG1Q9ULL1 1385 aa31.2■■■□□ 2.59
ATG4D-212ENST00000590096 PCGF6Q9BYE7 350 aa31.19■■■□□ 2.58
ATG4D-212ENST00000590096 NEXMIFQ5QGS0 1516 aa31.19■■■□□ 2.58
ATG4D-212ENST00000590096 RPGRIP1LQ68CZ1 1315 aa31.17■■■□□ 2.58
ATG4D-212ENST00000590096 SPATA31E1Q6ZUB1 1445 aa31.16■■■□□ 2.58
ATG4D-212ENST00000590096 ZNF335Q9H4Z2 1342 aaPredicted RBP31.16■■■□□ 2.58
ATG4D-212ENST00000590096 RGL3Q3MIN7 710 aa31.15■■■□□ 2.58
ATG4D-212ENST00000590096 SENP3Q9H4L4 574 aaPredicted RBP31.15■■■□□ 2.58
ATG4D-212ENST00000590096 SLC26A8Q96RN1 970 aa31.12■■■□□ 2.57
ATG4D-212ENST00000590096 PPLO60437 1756 aa31.12■■■□□ 2.57
ATG4D-212ENST00000590096 VGFO15240 615 aaPredicted RBP31.1■■■□□ 2.57
ATG4D-212ENST00000590096 LTBP4Q8N2S1 1624 aa31.09■■■□□ 2.57
ATG4D-212ENST00000590096 DHX57Q6P158 1386 aaKnown RBP31.09■■■□□ 2.57
ATG4D-212ENST00000590096 DIP2AQ14689 1571 aa31.06■■■□□ 2.56
ATG4D-212ENST00000590096 SETBP1Q9Y6X0 1596 aa31.05■■■□□ 2.56
ATG4D-212ENST00000590096 IFT172Q9UG01 1749 aa31.04■■■□□ 2.56
ATG4D-212ENST00000590096 ADAMTS13Q76LX8 1427 aa31.04■■■□□ 2.56
ATG4D-212ENST00000590096 TBX22Q9Y458 520 aa31.03■■■□□ 2.56
ATG4D-212ENST00000590096 CPS1P31327 1500 aa31.03■■■□□ 2.56
ATG4D-212ENST00000590096 NRXN3Q9Y4C0 1643 aa31.01■■■□□ 2.55
ATG4D-212ENST00000590096 STRCP1A6NGW2 1772 aa30.99■■■□□ 2.55
ATG4D-212ENST00000590096 KCNA6P17658 529 aa30.96■■■□□ 2.55
ATG4D-212ENST00000590096 PIK3R4Q99570 1358 aa30.95■■■□□ 2.55
ATG4D-212ENST00000590096 ADGRF5Q8IZF2 1346 aa30.95■■■□□ 2.54
ATG4D-212ENST00000590096 CHD2O14647 1828 aaKnown RBP30.94■■■□□ 2.54
ATG4D-212ENST00000590096 NWD1Q149M9 1564 aa30.93■■■□□ 2.54
ATG4D-212ENST00000590096 MYOM2P54296 1465 aa30.93■■■□□ 2.54
ATG4D-212ENST00000590096 IQSEC2Q5JU85 1478 aa30.92■■■□□ 2.54
ATG4D-212ENST00000590096 ALKQ9UM73 1620 aa30.91■■■□□ 2.54
ATG4D-212ENST00000590096 DCAF11Q8TEB1 546 aa30.9■■■□□ 2.54
ATG4D-212ENST00000590096 SIN3AQ96ST3 1273 aa30.89■■■□□ 2.54
ATG4D-212ENST00000590096 NKTRP30414 1462 aaKnown RBP30.89■■■□□ 2.53
ATG4D-212ENST00000590096 PIK3C2GO75747 1445 aa30.88■■■□□ 2.53
ATG4D-212ENST00000590096 LRRC7Q96NW7 1537 aa30.88■■■□□ 2.53
ATG4D-212ENST00000590096 NEUROD1Q13562 356 aa30.87■■■□□ 2.53
ATG4D-212ENST00000590096 STAC3Q96MF2 364 aa30.87■■■□□ 2.53
ATG4D-212ENST00000590096 KDM2AQ9Y2K7 1162 aa30.86■■■□□ 2.53
ATG4D-212ENST00000590096 METP08581 1390 aa30.86■■■□□ 2.53
ATG4D-212ENST00000590096 NRXN1Q9ULB1 1477 aa30.86■■■□□ 2.53
ATG4D-212ENST00000590096 SETD1AO15047 1707 aaKnown RBP30.86■■■□□ 2.53
ATG4D-212ENST00000590096 PTPRUQ92729 1446 aa30.83■■■□□ 2.53
ATG4D-212ENST00000590096 PROSER2Q86WR7 435 aaPredicted RBP30.83■■■□□ 2.53
ATG4D-212ENST00000590096 AMOTL2Q9Y2J4 779 aa30.83■■■□□ 2.53
ATG4D-212ENST00000590096 XRN1Q8IZH2 1706 aaKnown RBP30.79■■■□□ 2.52
ATG4D-212ENST00000590096 LAMC1P11047 1609 aa30.79■■■□□ 2.52
ATG4D-212ENST00000590096 TMEM94Q12767 1356 aa30.78■■■□□ 2.52
ATG4D-212ENST00000590096 C14orf93Q9H972 538 aaKnown RBP30.76■■■□□ 2.51
ATG4D-212ENST00000590096 XIRP1Q702N8 1843 aaKnown RBP30.75■■■□□ 2.51
ATG4D-212ENST00000590096 CFAP70Q5T0N1 1121 aa30.74■■■□□ 2.51
ATG4D-212ENST00000590096 L3MBTL2Q969R5 705 aa30.73■■■□□ 2.51
ATG4D-212ENST00000590096 RBM33Q96EV2 1170 aaKnown RBP30.72■■■□□ 2.51
ATG4D-212ENST00000590096 ASXL1Q8IXJ9 1541 aa30.7■■■□□ 2.51
ATG4D-212ENST00000590096 UBAP1LF5GYI3 381 aa30.7■■■□□ 2.51
ATG4D-212ENST00000590096 TMEM132EQ6IEE7 984 aa30.7■■■□□ 2.51
ATG4D-212ENST00000590096 NCOA3Q9Y6Q9 1424 aa30.69■■■□□ 2.5
ATG4D-212ENST00000590096 TONSLQ96HA7 1378 aa30.68■■■□□ 2.5
ATG4D-212ENST00000590096 PTCH1Q13635 1447 aa30.68■■■□□ 2.5
ATG4D-212ENST00000590096 C14orf37Q86TY3 774 aa30.68■■■□□ 2.5
ATG4D-212ENST00000590096 CLSPNQ9HAW4 1339 aa30.68■■■□□ 2.5
ATG4D-212ENST00000590096 DISP3Q9P2K9 1392 aa30.67■■■□□ 2.5
ATG4D-212ENST00000590096 TOM1O60784 492 aa30.67■■■□□ 2.5
ATG4D-212ENST00000590096 LRPPRCP42704 1394 aaKnown RBP30.66■■■□□ 2.5
ATG4D-212ENST00000590096 PRAG1Q86YV5 1406 aa30.66■■■□□ 2.5
ATG4D-212ENST00000590096 STK26Q9P289 416 aa30.66■■■□□ 2.5
ATG4D-212ENST00000590096 MSH6P52701 1360 aa30.66■■■□□ 2.5
ATG4D-212ENST00000590096 YTHDC2Q9H6S0 1430 aaKnown RBP30.65■■■□□ 2.5
ATG4D-212ENST00000590096 CCER1Q8TC90 406 aaPredicted RBP30.65■■■□□ 2.5
ATG4D-212ENST00000590096 KNDC1Q76NI1 1749 aa30.63■■■□□ 2.49
ATG4D-212ENST00000590096 ROBO2Q9HCK4 1378 aa30.63■■■□□ 2.49
ATG4D-212ENST00000590096 ABCC11Q96J66 1382 aa30.62■■■□□ 2.49
ATG4D-212ENST00000590096 ILDR2Q71H61 639 aa30.61■■■□□ 2.49
ATG4D-212ENST00000590096 TECPR2O15040 1411 aa30.61■■■□□ 2.49
ATG4D-212ENST00000590096 KIAA1210Q9ULL0 1709 aa30.61■■■□□ 2.49
ATG4D-212ENST00000590096 ADGRB1O14514 1584 aa30.6■■■□□ 2.49
ATG4D-212ENST00000590096 C19orf44Q9H6X5 657 aa30.57■■■□□ 2.48
ATG4D-212ENST00000590096 SCAF1Q9H7N4 1312 aaKnown RBP30.56■■■□□ 2.48
ATG4D-212ENST00000590096 SIPA1L2Q9P2F8 1722 aaPredicted RBP30.55■■■□□ 2.48
ATG4D-212ENST00000590096 ADGRL3Q9HAR2 1447 aa30.55■■■□□ 2.48
ATG4D-212ENST00000590096 PIP4K2BP78356 416 aa30.54■■■□□ 2.48
ATG4D-212ENST00000590096 ATF3P18847 181 aa30.53■■■□□ 2.48
ATG4D-212ENST00000590096 NALCNQ8IZF0 1738 aa30.53■■■□□ 2.48
ATG4D-212ENST00000590096 SIRT1Q96EB6 747 aa30.52■■■□□ 2.48
ATG4D-212ENST00000590096 DCCP43146 1447 aa30.51■■■□□ 2.47
ATG4D-212ENST00000590096 FAM135BQ49AJ0 1406 aa30.51■■■□□ 2.47
ATG4D-212ENST00000590096 CADPS2Q86UW7 1296 aa30.51■■■□□ 2.47
ATG4D-212ENST00000590096 DLC1Q96QB1 1528 aa30.51■■■□□ 2.47
ATG4D-212ENST00000590096 WAPLQ7Z5K2 1190 aa30.5■■■□□ 2.47
ATG4D-212ENST00000590096 TRAK1Q9UPV9 953 aa30.5■■■□□ 2.47
ATG4D-212ENST00000590096 TRPM1Q7Z4N2 1603 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms