RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PIP4K2BP78356 416 aa18.55■□□□□ 0.56
SS18-225ENST00000585121 KCNA6P17658 529 aa18.54■□□□□ 0.56
SS18-225ENST00000585121 LRRC7Q96NW7 1537 aa18.53■□□□□ 0.56
SS18-225ENST00000585121 ZFYVE9O95405 1425 aa18.53■□□□□ 0.56
SS18-225ENST00000585121 PLEKHG1Q9ULL1 1385 aa18.53■□□□□ 0.56
SS18-225ENST00000585121 TMEM131LA2VDJ0 1609 aa18.53■□□□□ 0.56
SS18-225ENST00000585121 SLC4A1APQ9BWU0 796 aaKnown RBP18.52■□□□□ 0.56
SS18-225ENST00000585121 SENP3Q9H4L4 574 aaPredicted RBP18.52■□□□□ 0.56
SS18-225ENST00000585121 ZNF326Q5BKZ1 582 aaKnown RBP18.51■□□□□ 0.55
SS18-225ENST00000585121 NUTM2DQ5VT03 806 aaPredicted RBP18.5■□□□□ 0.55
SS18-225ENST00000585121 PROSER2Q86WR7 435 aaPredicted RBP18.49■□□□□ 0.55
SS18-225ENST00000585121 TBX22Q9Y458 520 aa18.49■□□□□ 0.55
SS18-225ENST00000585121 STRCP1A6NGW2 1772 aa18.47■□□□□ 0.55
SS18-225ENST00000585121 ACIN1Q9UKV3 1341 aaKnown RBP18.47■□□□□ 0.55
SS18-225ENST00000585121 SPHKAPQ2M3C7 1700 aa18.46■□□□□ 0.55
SS18-225ENST00000585121 MYO5BQ9ULV0 1848 aa18.46■□□□□ 0.55
SS18-225ENST00000585121 TMEM94Q12767 1356 aa18.44■□□□□ 0.54
SS18-225ENST00000585121 TRPM2O94759 1503 aa18.43■□□□□ 0.54
SS18-225ENST00000585121 HSPA1LP34931 641 aa18.43■□□□□ 0.54
SS18-225ENST00000585121 NKTRP30414 1462 aaKnown RBP18.41■□□□□ 0.54
SS18-225ENST00000585121 PIK3R4Q99570 1358 aa18.4■□□□□ 0.54
SS18-225ENST00000585121 DISP3Q9P2K9 1392 aa18.4■□□□□ 0.54
SS18-225ENST00000585121 SETD5Q9C0A6 1442 aa18.39■□□□□ 0.54
SS18-225ENST00000585121 RBM33Q96EV2 1170 aaKnown RBP18.39■□□□□ 0.54
SS18-225ENST00000585121 MPHOSPH9Q99550 1183 aa18.39■□□□□ 0.54
SS18-225ENST00000585121 DIP2AQ14689 1571 aa18.39■□□□□ 0.53
SS18-225ENST00000585121 ADAMTS13Q76LX8 1427 aa18.39■□□□□ 0.53
SS18-225ENST00000585121 NWD1Q149M9 1564 aa18.38■□□□□ 0.53
SS18-225ENST00000585121 CLTCL1P53675 1640 aa18.38■□□□□ 0.53
SS18-225ENST00000585121 FOXD1Q16676 465 aa18.38■□□□□ 0.53
SS18-225ENST00000585121 C14orf37Q86TY3 774 aa18.38■□□□□ 0.53
SS18-225ENST00000585121 MSH6P52701 1360 aa18.37■□□□□ 0.53
SS18-225ENST00000585121 VGFO15240 615 aaPredicted RBP18.37■□□□□ 0.53
SS18-225ENST00000585121 RPGRIP1LQ68CZ1 1315 aa18.36■□□□□ 0.53
SS18-225ENST00000585121 AMOTL2Q9Y2J4 779 aa18.35■□□□□ 0.53
SS18-225ENST00000585121 ALKQ9UM73 1620 aa18.35■□□□□ 0.53
SS18-225ENST00000585121 CCDC144AA2RUR9 1427 aa18.33■□□□□ 0.53
SS18-225ENST00000585121 KIF1BO60333 1816 aa18.33■□□□□ 0.53
SS18-225ENST00000585121 NCOA3Q9Y6Q9 1424 aa18.33■□□□□ 0.53
SS18-225ENST00000585121 CHD2O14647 1828 aaKnown RBP18.33■□□□□ 0.52
SS18-225ENST00000585121 XIRP1Q702N8 1843 aaKnown RBP18.32■□□□□ 0.52
SS18-225ENST00000585121 SETBP1Q9Y6X0 1596 aa18.31■□□□□ 0.52
SS18-225ENST00000585121 FAM135BQ49AJ0 1406 aa18.31■□□□□ 0.52
SS18-225ENST00000585121 NEXMIFQ5QGS0 1516 aa18.31■□□□□ 0.52
SS18-225ENST00000585121 C19orf44Q9H6X5 657 aa18.3■□□□□ 0.52
SS18-225ENST00000585121 SLAIN2Q9P270 581 aa18.3■□□□□ 0.52
SS18-225ENST00000585121 RAB3GAP2Q9H2M9 1393 aa18.3■□□□□ 0.52
SS18-225ENST00000585121 ATF3P18847 181 aa18.29■□□□□ 0.52
SS18-225ENST00000585121 RGL3Q3MIN7 710 aa18.28■□□□□ 0.52
SS18-225ENST00000585121 PTPRUQ92729 1446 aa18.28■□□□□ 0.52
SS18-225ENST00000585121 CADPS2Q86UW7 1296 aa18.28■□□□□ 0.52
SS18-225ENST00000585121 METP08581 1390 aa18.27■□□□□ 0.52
SS18-225ENST00000585121 NRXN3Q9Y4C0 1643 aa18.25■□□□□ 0.51
SS18-225ENST00000585121 HRCP23327 699 aa18.24■□□□□ 0.51
SS18-225ENST00000585121 ANKRD30BQ9BXX2 1392 aa18.23■□□□□ 0.51
SS18-225ENST00000585121 SPATA31E1Q6ZUB1 1445 aa18.21■□□□□ 0.51
SS18-225ENST00000585121 PHF23Q9BUL5 403 aaPredicted RBP18.2■□□□□ 0.5
SS18-225ENST00000585121 ADGRF5Q8IZF2 1346 aa18.19■□□□□ 0.5
SS18-225ENST00000585121 ROBO1Q9Y6N7 1651 aa18.19■□□□□ 0.5
SS18-225ENST00000585121 XRN1Q8IZH2 1706 aaKnown RBP18.19■□□□□ 0.5
SS18-225ENST00000585121 DCCP43146 1447 aa18.19■□□□□ 0.5
SS18-225ENST00000585121 ILDR2Q71H61 639 aa18.18■□□□□ 0.5
SS18-225ENST00000585121 PPLO60437 1756 aa18.17■□□□□ 0.5
SS18-225ENST00000585121 MED1Q15648 1581 aaPredicted RBP18.17■□□□□ 0.5
SS18-225ENST00000585121 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.16■□□□□ 0.5
SS18-225ENST00000585121 PTCH1Q13635 1447 aa18.15■□□□□ 0.5
SS18-225ENST00000585121 ADGRL3Q9HAR2 1447 aa18.14■□□□□ 0.49
SS18-225ENST00000585121 BRINP3Q76B58 766 aa18.13■□□□□ 0.49
SS18-225ENST00000585121 ROBO2Q9HCK4 1378 aa18.13■□□□□ 0.49
SS18-225ENST00000585121 STK26Q9P289 416 aa18.12■□□□□ 0.49
SS18-225ENST00000585121 JCADQ9P266 1359 aa18.11■□□□□ 0.49
SS18-225ENST00000585121 PRAG1Q86YV5 1406 aa18.1■□□□□ 0.49
SS18-225ENST00000585121 PIK3C2GO75747 1445 aa18.1■□□□□ 0.49
SS18-225ENST00000585121 TMEM132EQ6IEE7 984 aa18.09■□□□□ 0.49
SS18-225ENST00000585121 MST1RQ04912 1400 aa18.09■□□□□ 0.49
SS18-225ENST00000585121 SETD1AO15047 1707 aaKnown RBP18.09■□□□□ 0.49
SS18-225ENST00000585121 PHLPP1O60346 1717 aa18.09■□□□□ 0.49
SS18-225ENST00000585121 LRPPRCP42704 1394 aaKnown RBP18.09■□□□□ 0.49
SS18-225ENST00000585121 C14orf93Q9H972 538 aaKnown RBP18.08■□□□□ 0.49
SS18-225ENST00000585121 SOCS7O14512 581 aa18.07■□□□□ 0.48
SS18-225ENST00000585121 STAC3Q96MF2 364 aa18.07■□□□□ 0.48
SS18-225ENST00000585121 ABCC11Q96J66 1382 aa18.06■□□□□ 0.48
SS18-225ENST00000585121 MYOM2P54296 1465 aa18.06■□□□□ 0.48
SS18-225ENST00000585121 IFT172Q9UG01 1749 aa18.06■□□□□ 0.48
SS18-225ENST00000585121 DHX57Q6P158 1386 aaKnown RBP18.06■□□□□ 0.48
SS18-225ENST00000585121 CFAP70Q5T0N1 1121 aa18.05■□□□□ 0.48
SS18-225ENST00000585121 DCAF11Q8TEB1 546 aa18.05■□□□□ 0.48
SS18-225ENST00000585121 KDM2AQ9Y2K7 1162 aa18.05■□□□□ 0.48
SS18-225ENST00000585121 AHDC1Q5TGY3 1603 aaPredicted RBP18.05■□□□□ 0.48
SS18-225ENST00000585121 WAPLQ7Z5K2 1190 aa18.04■□□□□ 0.48
SS18-225ENST00000585121 ASXL1Q8IXJ9 1541 aa18.04■□□□□ 0.48
SS18-225ENST00000585121 SPATA31A6Q5VVP1 1343 aa18.04■□□□□ 0.48
SS18-225ENST00000585121 TECPR2O15040 1411 aa18.04■□□□□ 0.48
SS18-225ENST00000585121 YTHDC2Q9H6S0 1430 aaKnown RBP18.04■□□□□ 0.48
SS18-225ENST00000585121 C1orf167Q5SNV9 1468 aa18.03■□□□□ 0.48
SS18-225ENST00000585121 NRXN1Q9ULB1 1477 aa18.03■□□□□ 0.48
SS18-225ENST00000585121 NALCNQ8IZF0 1738 aa18.03■□□□□ 0.48
SS18-225ENST00000585121 LRRC59Q96AG4 307 aaKnown RBP18.03■□□□□ 0.48
SS18-225ENST00000585121 SIRT1Q96EB6 747 aa18.03■□□□□ 0.48
SS18-225ENST00000585121 COL16A1Q07092 1604 aaPredicted RBP18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms