RNA–Protein interactions for RNA: ENST00000580061.5

CSNK1D-212, Transcript of casein kinase 1 delta, humanhuman

TSL 3

Gene CSNK1D, Length 578 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-212ENST00000580061 ZFYVE9O95405 1425 aa22.99■■□□□ 1.27
CSNK1D-212ENST00000580061 L3MBTL2Q969R5 705 aa22.98■■□□□ 1.27
CSNK1D-212ENST00000580061 RIMS2Q9UQ26 1411 aa22.98■■□□□ 1.27
CSNK1D-212ENST00000580061 TIMELESSQ9UNS1 1208 aa22.97■■□□□ 1.27
CSNK1D-212ENST00000580061 POLR1AO95602 1720 aaPredicted RBP22.94■■□□□ 1.26
CSNK1D-212ENST00000580061 DCAF11Q8TEB1 546 aa22.94■■□□□ 1.26
CSNK1D-212ENST00000580061 MYOM2P54296 1465 aa22.93■■□□□ 1.26
CSNK1D-212ENST00000580061 AEBP2Q6ZN18 517 aaPredicted RBP22.92■■□□□ 1.26
CSNK1D-212ENST00000580061 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.92■■□□□ 1.26
CSNK1D-212ENST00000580061 HDGFP51858 240 aaKnown RBP22.91■■□□□ 1.26
CSNK1D-212ENST00000580061 HSPA2P54652 639 aa22.91■■□□□ 1.26
CSNK1D-212ENST00000580061 STAC3Q96MF2 364 aa22.91■■□□□ 1.26
CSNK1D-212ENST00000580061 LTKP29376 864 aa22.9■■□□□ 1.26
CSNK1D-212ENST00000580061 NUTM2DQ5VT03 806 aaPredicted RBP22.9■■□□□ 1.26
CSNK1D-212ENST00000580061 TXNDC2Q86VQ3 553 aa22.9■■□□□ 1.26
CSNK1D-212ENST00000580061 EID1Q9Y6B2 187 aa22.9■■□□□ 1.26
CSNK1D-212ENST00000580061 SCAF11Q99590 1463 aaKnown RBP22.9■■□□□ 1.26
CSNK1D-212ENST00000580061 VGFO15240 615 aaPredicted RBP22.89■■□□□ 1.25
CSNK1D-212ENST00000580061 KDM2AQ9Y2K7 1162 aa22.89■■□□□ 1.25
CSNK1D-212ENST00000580061 NRXN1Q9ULB1 1477 aa22.88■■□□□ 1.25
CSNK1D-212ENST00000580061 ANKLE2Q86XL3 938 aa22.88■■□□□ 1.25
CSNK1D-212ENST00000580061 ADGRF5Q8IZF2 1346 aa22.87■■□□□ 1.25
CSNK1D-212ENST00000580061 STRCQ7RTU9 1775 aa22.87■■□□□ 1.25
CSNK1D-212ENST00000580061 PPP1R15AO75807 674 aaPredicted RBP22.86■■□□□ 1.25
CSNK1D-212ENST00000580061 PIK3C2GO75747 1445 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 PRAG1Q86YV5 1406 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 NRXN3Q9Y4C0 1643 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 PLEKHG1Q9ULL1 1385 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 MED14O60244 1454 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 SETBP1Q9Y6X0 1596 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 IQGAP1P46940 1657 aa22.84■■□□□ 1.25
CSNK1D-212ENST00000580061 NCKAP5LQ9HCH0 1330 aa22.82■■□□□ 1.24
CSNK1D-212ENST00000580061 KIAA1210Q9ULL0 1709 aa22.8■■□□□ 1.24
CSNK1D-212ENST00000580061 SETD1AO15047 1707 aaKnown RBP22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 LAMC1P11047 1609 aa22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 TRPM1Q7Z4N2 1603 aa22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 ZEB1P37275 1124 aaPredicted RBP22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 NBPF8Q3BBV2 869 aa22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 NPHP4O75161 1426 aaPredicted RBP22.79■■□□□ 1.24
CSNK1D-212ENST00000580061 ALKQ9UM73 1620 aa22.78■■□□□ 1.24
CSNK1D-212ENST00000580061 SENP3Q9H4L4 574 aaPredicted RBP22.77■■□□□ 1.24
CSNK1D-212ENST00000580061 ADAMTS13Q76LX8 1427 aa22.76■■□□□ 1.23
CSNK1D-212ENST00000580061 DIP2AQ14689 1571 aa22.76■■□□□ 1.23
CSNK1D-212ENST00000580061 BCANQ96GW7 911 aa22.75■■□□□ 1.23
CSNK1D-212ENST00000580061 CFAP70Q5T0N1 1121 aa22.74■■□□□ 1.23
CSNK1D-212ENST00000580061 C14orf93Q9H972 538 aaKnown RBP22.74■■□□□ 1.23
CSNK1D-212ENST00000580061 RALGAPBQ86X10 1494 aa22.72■■□□□ 1.23
CSNK1D-212ENST00000580061 SLC26A8Q96RN1 970 aa22.71■■□□□ 1.23
CSNK1D-212ENST00000580061 TBX22Q9Y458 520 aa22.7■■□□□ 1.22
CSNK1D-212ENST00000580061 ASXL1Q8IXJ9 1541 aa22.7■■□□□ 1.22
CSNK1D-212ENST00000580061 ADGRB1O14514 1584 aa22.69■■□□□ 1.22
CSNK1D-212ENST00000580061 NBPF1Q3BBV0 1214 aa22.67■■□□□ 1.22
CSNK1D-212ENST00000580061 CHD2O14647 1828 aaKnown RBP22.66■■□□□ 1.22
CSNK1D-212ENST00000580061 METP08581 1390 aa22.66■■□□□ 1.22
CSNK1D-212ENST00000580061 DMRT2Q9Y5R5 561 aa22.66■■□□□ 1.22
CSNK1D-212ENST00000580061 ROCK2O75116 1388 aaKnown RBP22.65■■□□□ 1.22
CSNK1D-212ENST00000580061 GPRASP1Q5JY77 1395 aa22.64■■□□□ 1.22
CSNK1D-212ENST00000580061 TMEM132EQ6IEE7 984 aa22.64■■□□□ 1.21
CSNK1D-212ENST00000580061 PIK3R4Q99570 1358 aa22.63■■□□□ 1.21
CSNK1D-212ENST00000580061 KNDC1Q76NI1 1749 aa22.61■■□□□ 1.21
CSNK1D-212ENST00000580061 PTPRUQ92729 1446 aa22.61■■□□□ 1.21
CSNK1D-212ENST00000580061 XRN1Q8IZH2 1706 aaKnown RBP22.6■■□□□ 1.21
CSNK1D-212ENST00000580061 YTHDC2Q9H6S0 1430 aaKnown RBP22.6■■□□□ 1.21
CSNK1D-212ENST00000580061 CARD11Q9BXL7 1154 aa22.59■■□□□ 1.21
CSNK1D-212ENST00000580061 LRPPRCP42704 1394 aaKnown RBP22.59■■□□□ 1.21
CSNK1D-212ENST00000580061 NWD1Q149M9 1564 aa22.59■■□□□ 1.21
CSNK1D-212ENST00000580061 STRCP1A6NGW2 1772 aa22.58■■□□□ 1.2
CSNK1D-212ENST00000580061 ARHGEF28Q8N1W1 1705 aaKnown RBP22.57■■□□□ 1.2
CSNK1D-212ENST00000580061 TECPR2O15040 1411 aa22.56■■□□□ 1.2
CSNK1D-212ENST00000580061 ABCC11Q96J66 1382 aa22.55■■□□□ 1.2
CSNK1D-212ENST00000580061 STK26Q9P289 416 aa22.55■■□□□ 1.2
CSNK1D-212ENST00000580061 AMOTL2Q9Y2J4 779 aa22.55■■□□□ 1.2
CSNK1D-212ENST00000580061 CPS1P31327 1500 aa22.55■■□□□ 1.2
CSNK1D-212ENST00000580061 DLC1Q96QB1 1528 aa22.54■■□□□ 1.2
CSNK1D-212ENST00000580061 KCNA6P17658 529 aa22.54■■□□□ 1.2
CSNK1D-212ENST00000580061 TRAK1Q9UPV9 953 aa22.53■■□□□ 1.2
CSNK1D-212ENST00000580061 PTCH1Q13635 1447 aa22.5■■□□□ 1.19
CSNK1D-212ENST00000580061 NKTRP30414 1462 aaKnown RBP22.5■■□□□ 1.19
CSNK1D-212ENST00000580061 ZNF335Q9H4Z2 1342 aaPredicted RBP22.5■■□□□ 1.19
CSNK1D-212ENST00000580061 USP47Q96K76 1375 aa22.5■■□□□ 1.19
CSNK1D-212ENST00000580061 ROBO2Q9HCK4 1378 aa22.49■■□□□ 1.19
CSNK1D-212ENST00000580061 SIRT1Q96EB6 747 aa22.48■■□□□ 1.19
CSNK1D-212ENST00000580061 FAM135BQ49AJ0 1406 aa22.48■■□□□ 1.19
CSNK1D-212ENST00000580061 EIF3AQ14152 1382 aaKnown RBP22.47■■□□□ 1.19
CSNK1D-212ENST00000580061 QRICH2Q9H0J4 1663 aa22.46■■□□□ 1.19
CSNK1D-212ENST00000580061 EIF4G2P78344 907 aaKnown RBP eCLIP22.45■■□□□ 1.18
CSNK1D-212ENST00000580061 WAPLQ7Z5K2 1190 aa22.44■■□□□ 1.18
CSNK1D-212ENST00000580061 PRAM1Q96QH2 718 aa22.44■■□□□ 1.18
CSNK1D-212ENST00000580061 PLEKHH1Q9ULM0 1364 aa22.44■■□□□ 1.18
CSNK1D-212ENST00000580061 LTBP4Q8N2S1 1624 aa22.43■■□□□ 1.18
CSNK1D-212ENST00000580061 XIRP1Q702N8 1843 aaKnown RBP22.43■■□□□ 1.18
CSNK1D-212ENST00000580061 CENPJQ9HC77 1338 aaPredicted RBP22.42■■□□□ 1.18
CSNK1D-212ENST00000580061 POGKQ9P215 609 aa22.42■■□□□ 1.18
CSNK1D-212ENST00000580061 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.42■■□□□ 1.18
CSNK1D-212ENST00000580061 ST20-MTHFSA0A0A6YYL1 179 aa22.41■■□□□ 1.18
CSNK1D-212ENST00000580061 HSPA5P11021 654 aaKnown RBP22.41■■□□□ 1.18
CSNK1D-212ENST00000580061 PROSER2Q86WR7 435 aaPredicted RBP22.4■■□□□ 1.18
CSNK1D-212ENST00000580061 LRRC7Q96NW7 1537 aa22.4■■□□□ 1.18
CSNK1D-212ENST00000580061 NALCNQ8IZF0 1738 aa22.39■■□□□ 1.17
CSNK1D-212ENST00000580061 SAFB2Q14151 953 aaKnown RBP eCLIP22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms