RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 ARHGEF40Q8TER5 1519 aa9.75□□□□□ -0.85
SMG1-215ENST00000568239 ARHGAP31Q2M1Z3 1444 aa9.75□□□□□ -0.85
SMG1-215ENST00000568239 AGLP35573 1532 aa9.74□□□□□ -0.85
SMG1-215ENST00000568239 SYNMO15061 1565 aa9.74□□□□□ -0.85
SMG1-215ENST00000568239 PPP6R1Q9UPN7 881 aa9.74□□□□□ -0.85
SMG1-215ENST00000568239 ADGRB3O60242 1522 aa9.74□□□□□ -0.85
SMG1-215ENST00000568239 REREQ9P2R6 1566 aa9.74□□□□□ -0.85
SMG1-215ENST00000568239 CLTCQ00610 1675 aaKnown RBP9.73□□□□□ -0.85
SMG1-215ENST00000568239 CCER2I3L3R5 266 aa9.73□□□□□ -0.85
SMG1-215ENST00000568239 TMF1P82094 1093 aa9.73□□□□□ -0.85
SMG1-215ENST00000568239 PREX1Q8TCU6 1659 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 NEURL4Q96JN8 1562 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 VGFO15240 615 aaPredicted RBP9.72□□□□□ -0.85
SMG1-215ENST00000568239 TESK2Q96S53 571 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 MYOM2P54296 1465 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 RPGRIP1LQ68CZ1 1315 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 TMEM132EQ6IEE7 984 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 DNAJC5Q9H3Z4 198 aa9.72□□□□□ -0.85
SMG1-215ENST00000568239 PRKRIP1Q9H875 184 aaPredicted RBP9.72□□□□□ -0.85
SMG1-215ENST00000568239 LAMC1P11047 1609 aa9.71□□□□□ -0.85
SMG1-215ENST00000568239 DISP3Q9P2K9 1392 aa9.71□□□□□ -0.86
SMG1-215ENST00000568239 TRAK1Q9UPV9 953 aa9.71□□□□□ -0.86
SMG1-215ENST00000568239 SCAF11Q99590 1463 aaKnown RBP9.71□□□□□ -0.86
SMG1-215ENST00000568239 IFT172Q9UG01 1749 aa9.7□□□□□ -0.86
SMG1-215ENST00000568239 ERVK-7P63135 1459 aa9.7□□□□□ -0.86
SMG1-215ENST00000568239 EIF3AQ14152 1382 aaKnown RBP9.7□□□□□ -0.86
SMG1-215ENST00000568239 PIK3C2BO00750 1634 aa9.7□□□□□ -0.86
SMG1-215ENST00000568239 ZMYM3Q14202 1370 aa9.7□□□□□ -0.86
SMG1-215ENST00000568239 PPLO60437 1756 aa9.69□□□□□ -0.86
SMG1-215ENST00000568239 MYO5BQ9ULV0 1848 aa9.69□□□□□ -0.86
SMG1-215ENST00000568239 C14orf93Q9H972 538 aaKnown RBP9.69□□□□□ -0.86
SMG1-215ENST00000568239 PIK3C2GO75747 1445 aa9.68□□□□□ -0.86
SMG1-215ENST00000568239 CCDC184Q52MB2 194 aa9.68□□□□□ -0.86
SMG1-215ENST00000568239 MRS2Q9HD23 443 aa9.68□□□□□ -0.86
SMG1-215ENST00000568239 IQGAP1P46940 1657 aa9.68□□□□□ -0.86
SMG1-215ENST00000568239 KIAA1210Q9ULL0 1709 aa9.67□□□□□ -0.86
SMG1-215ENST00000568239 KCNA4P22459 653 aa9.67□□□□□ -0.86
SMG1-215ENST00000568239 NRXN1Q9ULB1 1477 aa9.67□□□□□ -0.86
SMG1-215ENST00000568239 CEBPAP49715 358 aaPredicted RBP9.67□□□□□ -0.86
SMG1-215ENST00000568239 STK26Q9P289 416 aa9.67□□□□□ -0.86
SMG1-215ENST00000568239 PANK3Q9H999 370 aa9.66□□□□□ -0.86
SMG1-215ENST00000568239 NEXMIFQ5QGS0 1516 aa9.66□□□□□ -0.86
SMG1-215ENST00000568239 CDCA8Q53HL2 280 aa9.66□□□□□ -0.86
SMG1-215ENST00000568239 FAM9BQ8IZU0 186 aa9.66□□□□□ -0.86
SMG1-215ENST00000568239 TMEM131LA2VDJ0 1609 aa9.66□□□□□ -0.86
SMG1-215ENST00000568239 SAFB2Q14151 953 aaKnown RBP eCLIP9.66□□□□□ -0.86
SMG1-215ENST00000568239 CENPJQ9HC77 1338 aaPredicted RBP9.65□□□□□ -0.86
SMG1-215ENST00000568239 BCANQ96GW7 911 aa9.65□□□□□ -0.87
SMG1-215ENST00000568239 CC2D1BQ5T0F9 858 aaKnown RBP9.64□□□□□ -0.87
SMG1-215ENST00000568239 SPATA31D1Q6ZQQ2 1576 aa9.64□□□□□ -0.87
SMG1-215ENST00000568239 SCAF1Q9H7N4 1312 aaKnown RBP9.64□□□□□ -0.87
SMG1-215ENST00000568239 GTF3C3Q9Y5Q9 886 aa9.63□□□□□ -0.87
SMG1-215ENST00000568239 TNRQ92752 1358 aa9.63□□□□□ -0.87
SMG1-215ENST00000568239 HNRNPUQ00839 825 aaKnown RBP eCLIP9.63□□□□□ -0.87
SMG1-215ENST00000568239 A2ML1A8K2U0 1454 aa9.62□□□□□ -0.87
SMG1-215ENST00000568239 SETBP1Q9Y6X0 1596 aa9.62□□□□□ -0.87
SMG1-215ENST00000568239 ADGRB1O14514 1584 aa9.61□□□□□ -0.87
SMG1-215ENST00000568239 RIMS2Q9UQ26 1411 aa9.61□□□□□ -0.87
SMG1-215ENST00000568239 TMC1Q8TDI8 760 aa9.61□□□□□ -0.87
SMG1-215ENST00000568239 KNSTRNQ9Y448 316 aa9.61□□□□□ -0.87
SMG1-215ENST00000568239 ZFYVE9O95405 1425 aa9.61□□□□□ -0.87
SMG1-215ENST00000568239 KTN1Q86UP2 1357 aaKnown RBP9.61□□□□□ -0.87
SMG1-215ENST00000568239 PER1O15534 1290 aaPredicted RBP9.61□□□□□ -0.87
SMG1-215ENST00000568239 POGKQ9P215 609 aa9.6□□□□□ -0.87
SMG1-215ENST00000568239 RALBP1Q15311 655 aa9.6□□□□□ -0.87
SMG1-215ENST00000568239 HDGFP51858 240 aaKnown RBP9.6□□□□□ -0.87
SMG1-215ENST00000568239 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.59□□□□□ -0.87
SMG1-215ENST00000568239 PRAM1Q96QH2 718 aa9.59□□□□□ -0.87
SMG1-215ENST00000568239 KDM5AP29375 1690 aaKnown RBP9.58□□□□□ -0.88
SMG1-215ENST00000568239 MYBBP1AQ9BQG0 1328 aaKnown RBP9.58□□□□□ -0.88
SMG1-215ENST00000568239 MINK1Q8N4C8 1332 aaPredicted RBP9.58□□□□□ -0.88
SMG1-215ENST00000568239 QRICH2Q9H0J4 1663 aa9.58□□□□□ -0.88
SMG1-215ENST00000568239 FER1L4A9Z1Z3 1794 aa9.58□□□□□ -0.88
SMG1-215ENST00000568239 EVC2Q86UK5 1308 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 YTHDC2Q9H6S0 1430 aaKnown RBP9.57□□□□□ -0.88
SMG1-215ENST00000568239 ALKQ9UM73 1620 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 SENP3-EIF4A1A0A087X0R7 540 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 SRPK2P78362 688 aaKnown RBP9.57□□□□□ -0.88
SMG1-215ENST00000568239 SLC12A5Q9H2X9 1139 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 CABP2Q9NPB3 220 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 SBNO2Q9Y2G9 1366 aa9.57□□□□□ -0.88
SMG1-215ENST00000568239 MYO3AQ8NEV4 1616 aa9.56□□□□□ -0.88
SMG1-215ENST00000568239 TXNDC2Q86VQ3 553 aa9.56□□□□□ -0.88
SMG1-215ENST00000568239 ARHGEF28Q8N1W1 1705 aaKnown RBP9.56□□□□□ -0.88
SMG1-215ENST00000568239 ASXL1Q8IXJ9 1541 aa9.56□□□□□ -0.88
SMG1-215ENST00000568239 C3P01024 1663 aa9.56□□□□□ -0.88
SMG1-215ENST00000568239 TMEM2Q9UHN6 1383 aa9.55□□□□□ -0.88
SMG1-215ENST00000568239 WAPLQ7Z5K2 1190 aa9.55□□□□□ -0.88
SMG1-215ENST00000568239 NLRP13Q86W25 1043 aa9.55□□□□□ -0.88
SMG1-215ENST00000568239 PARD3Q8TEW0 1356 aa9.55□□□□□ -0.88
SMG1-215ENST00000568239 EID1Q9Y6B2 187 aa9.54□□□□□ -0.88
SMG1-215ENST00000568239 LTKP29376 864 aa9.54□□□□□ -0.88
SMG1-215ENST00000568239 AMER1Q5JTC6 1135 aaPredicted RBP9.54□□□□□ -0.88
SMG1-215ENST00000568239 MYOM1P52179 1685 aa9.54□□□□□ -0.88
SMG1-215ENST00000568239 UBR1Q8IWV7 1749 aa9.53□□□□□ -0.88
SMG1-215ENST00000568239 BRD4O60885 1362 aaPredicted RBP9.53□□□□□ -0.88
SMG1-215ENST00000568239 NLRP1Q9C000 1473 aa9.53□□□□□ -0.88
SMG1-215ENST00000568239 PNISRQ8TF01 805 aaKnown RBP9.53□□□□□ -0.88
SMG1-215ENST00000568239 SLC26A8Q96RN1 970 aa9.53□□□□□ -0.88
SMG1-215ENST00000568239 CARD14Q9BXL6 1004 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms