RNA–Protein interactions for RNA: ENST00000564703.1

RAB40C-208, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 3

Gene RAB40C, Length 921 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-208ENST00000564703 CLTCL1P53675 1640 aa23.35■■□□□ 1.33
RAB40C-208ENST00000564703 NUTM2DQ5VT03 806 aaPredicted RBP23.35■■□□□ 1.33
RAB40C-208ENST00000564703 POLR1AO95602 1720 aaPredicted RBP23.35■■□□□ 1.33
RAB40C-208ENST00000564703 MYO5BQ9ULV0 1848 aa23.35■■□□□ 1.33
RAB40C-208ENST00000564703 RGL3Q3MIN7 710 aa23.34■■□□□ 1.33
RAB40C-208ENST00000564703 MED14O60244 1454 aa23.33■■□□□ 1.33
RAB40C-208ENST00000564703 RPGRIP1LQ68CZ1 1315 aa23.33■■□□□ 1.32
RAB40C-208ENST00000564703 ANKRD30BQ9BXX2 1392 aa23.32■■□□□ 1.32
RAB40C-208ENST00000564703 VGFO15240 615 aaPredicted RBP23.31■■□□□ 1.32
RAB40C-208ENST00000564703 SENP3Q9H4L4 574 aaPredicted RBP23.3■■□□□ 1.32
RAB40C-208ENST00000564703 NEURL4Q96JN8 1562 aa23.28■■□□□ 1.32
RAB40C-208ENST00000564703 ZFYVE9O95405 1425 aa23.28■■□□□ 1.32
RAB40C-208ENST00000564703 SLC26A8Q96RN1 970 aa23.27■■□□□ 1.32
RAB40C-208ENST00000564703 IQGAP1P46940 1657 aa23.26■■□□□ 1.31
RAB40C-208ENST00000564703 PLEKHG1Q9ULL1 1385 aa23.26■■□□□ 1.31
RAB40C-208ENST00000564703 ZNF335Q9H4Z2 1342 aaPredicted RBP23.23■■□□□ 1.31
RAB40C-208ENST00000564703 TBX22Q9Y458 520 aa23.22■■□□□ 1.31
RAB40C-208ENST00000564703 SPATA31E1Q6ZUB1 1445 aa23.2■■□□□ 1.3
RAB40C-208ENST00000564703 DHX57Q6P158 1386 aaKnown RBP23.2■■□□□ 1.3
RAB40C-208ENST00000564703 CERKQ8TCT0 537 aa23.18■■□□□ 1.3
RAB40C-208ENST00000564703 NEXMIFQ5QGS0 1516 aa23.17■■□□□ 1.3
RAB40C-208ENST00000564703 NEUROD1Q13562 356 aa23.16■■□□□ 1.3
RAB40C-208ENST00000564703 STAC3Q96MF2 364 aa23.16■■□□□ 1.3
RAB40C-208ENST00000564703 KCNA6P17658 529 aa23.15■■□□□ 1.3
RAB40C-208ENST00000564703 DCAF11Q8TEB1 546 aa23.15■■□□□ 1.3
RAB40C-208ENST00000564703 KDM2AQ9Y2K7 1162 aa23.15■■□□□ 1.3
RAB40C-208ENST00000564703 SIN3AQ96ST3 1273 aa23.13■■□□□ 1.29
RAB40C-208ENST00000564703 ADGRF5Q8IZF2 1346 aa23.12■■□□□ 1.29
RAB40C-208ENST00000564703 PPLO60437 1756 aa23.12■■□□□ 1.29
RAB40C-208ENST00000564703 ADAMTS13Q76LX8 1427 aa23.1■■□□□ 1.29
RAB40C-208ENST00000564703 PROSER2Q86WR7 435 aaPredicted RBP23.09■■□□□ 1.29
RAB40C-208ENST00000564703 LTBP4Q8N2S1 1624 aa23.08■■□□□ 1.29
RAB40C-208ENST00000564703 PIK3R4Q99570 1358 aa23.08■■□□□ 1.29
RAB40C-208ENST00000564703 CPS1P31327 1500 aa23.08■■□□□ 1.28
RAB40C-208ENST00000564703 AMOTL2Q9Y2J4 779 aa23.07■■□□□ 1.28
RAB40C-208ENST00000564703 DIP2AQ14689 1571 aa23.06■■□□□ 1.28
RAB40C-208ENST00000564703 SETBP1Q9Y6X0 1596 aa23.06■■□□□ 1.28
RAB40C-208ENST00000564703 METP08581 1390 aa23.02■■□□□ 1.28
RAB40C-208ENST00000564703 CCER1Q8TC90 406 aaPredicted RBP23.02■■□□□ 1.28
RAB40C-208ENST00000564703 IFT172Q9UG01 1749 aa23.02■■□□□ 1.28
RAB40C-208ENST00000564703 L3MBTL2Q969R5 705 aa23.01■■□□□ 1.27
RAB40C-208ENST00000564703 C14orf93Q9H972 538 aaKnown RBP23.01■■□□□ 1.27
RAB40C-208ENST00000564703 ALKQ9UM73 1620 aa23■■□□□ 1.27
RAB40C-208ENST00000564703 MYOM2P54296 1465 aa23■■□□□ 1.27
RAB40C-208ENST00000564703 CHD2O14647 1828 aaKnown RBP23■■□□□ 1.27
RAB40C-208ENST00000564703 CFAP70Q5T0N1 1121 aa22.99■■□□□ 1.27
RAB40C-208ENST00000564703 C14orf37Q86TY3 774 aa22.99■■□□□ 1.27
RAB40C-208ENST00000564703 NRXN3Q9Y4C0 1643 aa22.99■■□□□ 1.27
RAB40C-208ENST00000564703 STRCP1A6NGW2 1772 aa22.98■■□□□ 1.27
RAB40C-208ENST00000564703 PIK3C2GO75747 1445 aa22.98■■□□□ 1.27
RAB40C-208ENST00000564703 TMEM132EQ6IEE7 984 aa22.97■■□□□ 1.27
RAB40C-208ENST00000564703 CLSPNQ9HAW4 1339 aa22.97■■□□□ 1.27
RAB40C-208ENST00000564703 IQSEC2Q5JU85 1478 aa22.97■■□□□ 1.27
RAB40C-208ENST00000564703 LRRC7Q96NW7 1537 aa22.97■■□□□ 1.27
RAB40C-208ENST00000564703 RBM33Q96EV2 1170 aaKnown RBP22.96■■□□□ 1.27
RAB40C-208ENST00000564703 STK26Q9P289 416 aa22.96■■□□□ 1.27
RAB40C-208ENST00000564703 TONSLQ96HA7 1378 aa22.96■■□□□ 1.27
RAB40C-208ENST00000564703 TOM1O60784 492 aa22.95■■□□□ 1.26
RAB40C-208ENST00000564703 NKTRP30414 1462 aaKnown RBP22.95■■□□□ 1.26
RAB40C-208ENST00000564703 TMEM94Q12767 1356 aa22.95■■□□□ 1.26
RAB40C-208ENST00000564703 FBXO41Q8TF61 875 aa22.95■■□□□ 1.26
RAB40C-208ENST00000564703 NRXN1Q9ULB1 1477 aa22.94■■□□□ 1.26
RAB40C-208ENST00000564703 PTPRUQ92729 1446 aa22.94■■□□□ 1.26
RAB40C-208ENST00000564703 UBAP1LF5GYI3 381 aa22.94■■□□□ 1.26
RAB40C-208ENST00000564703 NWD1Q149M9 1564 aa22.93■■□□□ 1.26
RAB40C-208ENST00000564703 NCOA3Q9Y6Q9 1424 aa22.89■■□□□ 1.25
RAB40C-208ENST00000564703 MSH6P52701 1360 aa22.89■■□□□ 1.25
RAB40C-208ENST00000564703 C19orf44Q9H6X5 657 aa22.88■■□□□ 1.25
RAB40C-208ENST00000564703 LRPPRCP42704 1394 aaKnown RBP22.88■■□□□ 1.25
RAB40C-208ENST00000564703 LAMC1P11047 1609 aa22.87■■□□□ 1.25
RAB40C-208ENST00000564703 ABCC11Q96J66 1382 aa22.87■■□□□ 1.25
RAB40C-208ENST00000564703 SCAF1Q9H7N4 1312 aaKnown RBP22.86■■□□□ 1.25
RAB40C-208ENST00000564703 SETD1AO15047 1707 aaKnown RBP22.86■■□□□ 1.25
RAB40C-208ENST00000564703 YTHDC2Q9H6S0 1430 aaKnown RBP22.85■■□□□ 1.25
RAB40C-208ENST00000564703 ATF3P18847 181 aa22.85■■□□□ 1.25
RAB40C-208ENST00000564703 TIMELESSQ9UNS1 1208 aa22.85■■□□□ 1.25
RAB40C-208ENST00000564703 PIP4K2BP78356 416 aa22.84■■□□□ 1.25
RAB40C-208ENST00000564703 SIRT1Q96EB6 747 aa22.84■■□□□ 1.25
RAB40C-208ENST00000564703 PRAG1Q86YV5 1406 aa22.83■■□□□ 1.25
RAB40C-208ENST00000564703 XRN1Q8IZH2 1706 aaKnown RBP22.83■■□□□ 1.25
RAB40C-208ENST00000564703 POGKQ9P215 609 aa22.83■■□□□ 1.25
RAB40C-208ENST00000564703 TRAK1Q9UPV9 953 aa22.83■■□□□ 1.25
RAB40C-208ENST00000564703 ROBO2Q9HCK4 1378 aa22.82■■□□□ 1.24
RAB40C-208ENST00000564703 CADPS2Q86UW7 1296 aa22.82■■□□□ 1.24
RAB40C-208ENST00000564703 NBPF1Q3BBV0 1214 aa22.81■■□□□ 1.24
RAB40C-208ENST00000564703 WAPLQ7Z5K2 1190 aa22.81■■□□□ 1.24
RAB40C-208ENST00000564703 ILDR1Q86SU0 546 aaPredicted RBP22.81■■□□□ 1.24
RAB40C-208ENST00000564703 PTCH1Q13635 1447 aa22.81■■□□□ 1.24
RAB40C-208ENST00000564703 XIRP1Q702N8 1843 aaKnown RBP22.8■■□□□ 1.24
RAB40C-208ENST00000564703 SLAIN2Q9P270 581 aa22.78■■□□□ 1.24
RAB40C-208ENST00000564703 TECPR2O15040 1411 aa22.77■■□□□ 1.24
RAB40C-208ENST00000564703 PRAM1Q96QH2 718 aa22.77■■□□□ 1.24
RAB40C-208ENST00000564703 NBPF8Q3BBV2 869 aa22.76■■□□□ 1.23
RAB40C-208ENST00000564703 KIAA1210Q9ULL0 1709 aa22.76■■□□□ 1.23
RAB40C-208ENST00000564703 ASXL1Q8IXJ9 1541 aa22.76■■□□□ 1.23
RAB40C-208ENST00000564703 FAM135BQ49AJ0 1406 aa22.75■■□□□ 1.23
RAB40C-208ENST00000564703 SAFB2Q14151 953 aaKnown RBP eCLIP22.75■■□□□ 1.23
RAB40C-208ENST00000564703 ADGRB1O14514 1584 aa22.74■■□□□ 1.23
RAB40C-208ENST00000564703 ROCK2O75116 1388 aaKnown RBP22.74■■□□□ 1.23
RAB40C-208ENST00000564703 ADGRL3Q9HAR2 1447 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms