RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 AGLP35573 1532 aa12.97□□□□□ -0.33
LINC00838-201ENST00000562956 NRXN1Q9ULB1 1477 aa12.97□□□□□ -0.33
LINC00838-201ENST00000562956 IFT172Q9UG01 1749 aa12.96□□□□□ -0.33
LINC00838-201ENST00000562956 CCDC184Q52MB2 194 aa12.96□□□□□ -0.33
LINC00838-201ENST00000562956 SCAF11Q99590 1463 aaKnown RBP12.96□□□□□ -0.34
LINC00838-201ENST00000562956 PIK3C2BO00750 1634 aa12.96□□□□□ -0.34
LINC00838-201ENST00000562956 IDI1Q13907 227 aa12.95□□□□□ -0.34
LINC00838-201ENST00000562956 FBXO31Q5XUX0 539 aaPredicted RBP12.95□□□□□ -0.34
LINC00838-201ENST00000562956 ARHGEF40Q8TER5 1519 aa12.94□□□□□ -0.34
LINC00838-201ENST00000562956 IQGAP1P46940 1657 aa12.94□□□□□ -0.34
LINC00838-201ENST00000562956 CNGB1Q14028 1251 aaPredicted RBP12.94□□□□□ -0.34
LINC00838-201ENST00000562956 TMF1P82094 1093 aa12.94□□□□□ -0.34
LINC00838-201ENST00000562956 MLECQ14165 292 aa12.94□□□□□ -0.34
LINC00838-201ENST00000562956 RPGRIP1LQ68CZ1 1315 aa12.94□□□□□ -0.34
LINC00838-201ENST00000562956 KIAA1210Q9ULL0 1709 aa12.93□□□□□ -0.34
LINC00838-201ENST00000562956 SLC52A1Q9NWF4 448 aa12.93□□□□□ -0.34
LINC00838-201ENST00000562956 PPP6R1Q9UPN7 881 aa12.93□□□□□ -0.34
LINC00838-201ENST00000562956 PIK3C2GO75747 1445 aa12.92□□□□□ -0.34
LINC00838-201ENST00000562956 NUTM2DQ5VT03 806 aaPredicted RBP12.92□□□□□ -0.34
LINC00838-201ENST00000562956 PREX1Q8TCU6 1659 aa12.91□□□□□ -0.34
LINC00838-201ENST00000562956 PPLO60437 1756 aa12.91□□□□□ -0.34
LINC00838-201ENST00000562956 EIF3AQ14152 1382 aaKnown RBP12.9□□□□□ -0.34
LINC00838-201ENST00000562956 ERVK-7P63135 1459 aa12.9□□□□□ -0.34
LINC00838-201ENST00000562956 C14orf93Q9H972 538 aaKnown RBP12.9□□□□□ -0.34
LINC00838-201ENST00000562956 MRS2Q9HD23 443 aa12.9□□□□□ -0.34
LINC00838-201ENST00000562956 NEXMIFQ5QGS0 1516 aa12.89□□□□□ -0.35
LINC00838-201ENST00000562956 CLTCQ00610 1675 aaKnown RBP12.88□□□□□ -0.35
LINC00838-201ENST00000562956 VGFO15240 615 aaPredicted RBP12.88□□□□□ -0.35
LINC00838-201ENST00000562956 PER1O15534 1290 aaPredicted RBP12.88□□□□□ -0.35
LINC00838-201ENST00000562956 SETBP1Q9Y6X0 1596 aa12.87□□□□□ -0.35
LINC00838-201ENST00000562956 TMEM132EQ6IEE7 984 aa12.87□□□□□ -0.35
LINC00838-201ENST00000562956 PANK3Q9H999 370 aa12.87□□□□□ -0.35
LINC00838-201ENST00000562956 TMEM131LA2VDJ0 1609 aa12.87□□□□□ -0.35
LINC00838-201ENST00000562956 ADGRB1O14514 1584 aa12.86□□□□□ -0.35
LINC00838-201ENST00000562956 FAM9BQ8IZU0 186 aa12.85□□□□□ -0.35
LINC00838-201ENST00000562956 TRHP20396 242 aaPredicted RBP12.85□□□□□ -0.35
LINC00838-201ENST00000562956 TRAK1Q9UPV9 953 aa12.85□□□□□ -0.35
LINC00838-201ENST00000562956 HNRNPUQ00839 825 aaKnown RBP eCLIP12.85□□□□□ -0.35
LINC00838-201ENST00000562956 CDCA8Q53HL2 280 aa12.84□□□□□ -0.35
LINC00838-201ENST00000562956 SENP3Q9H4L4 574 aaPredicted RBP12.84□□□□□ -0.35
LINC00838-201ENST00000562956 SPATA31D1Q6ZQQ2 1576 aa12.84□□□□□ -0.35
LINC00838-201ENST00000562956 ZFYVE9O95405 1425 aa12.84□□□□□ -0.35
LINC00838-201ENST00000562956 ZMYM3Q14202 1370 aa12.84□□□□□ -0.35
LINC00838-201ENST00000562956 ESF1Q9H501 851 aaKnown RBP12.84□□□□□ -0.35
LINC00838-201ENST00000562956 RALBP1Q15311 655 aa12.83□□□□□ -0.36
LINC00838-201ENST00000562956 KTN1Q86UP2 1357 aaKnown RBP12.83□□□□□ -0.36
LINC00838-201ENST00000562956 STAG3Q9UJ98 1225 aa12.82□□□□□ -0.36
LINC00838-201ENST00000562956 CENPJQ9HC77 1338 aaPredicted RBP12.82□□□□□ -0.36
LINC00838-201ENST00000562956 MYO5BQ9ULV0 1848 aa12.82□□□□□ -0.36
LINC00838-201ENST00000562956 MYBBP1AQ9BQG0 1328 aaKnown RBP12.81□□□□□ -0.36
LINC00838-201ENST00000562956 PARD3Q8TEW0 1356 aa12.81□□□□□ -0.36
LINC00838-201ENST00000562956 MYO3AQ8NEV4 1616 aa12.81□□□□□ -0.36
LINC00838-201ENST00000562956 SBNO2Q9Y2G9 1366 aa12.81□□□□□ -0.36
LINC00838-201ENST00000562956 SLC24A1O60721 1099 aa12.8□□□□□ -0.36
LINC00838-201ENST00000562956 CC2D1BQ5T0F9 858 aaKnown RBP12.8□□□□□ -0.36
LINC00838-201ENST00000562956 A2ML1A8K2U0 1454 aa12.8□□□□□ -0.36
LINC00838-201ENST00000562956 TMC1Q8TDI8 760 aa12.79□□□□□ -0.36
LINC00838-201ENST00000562956 ASXL1Q8IXJ9 1541 aa12.78□□□□□ -0.36
LINC00838-201ENST00000562956 BRD4O60885 1362 aaPredicted RBP12.78□□□□□ -0.36
LINC00838-201ENST00000562956 PNISRQ8TF01 805 aaKnown RBP12.78□□□□□ -0.36
LINC00838-201ENST00000562956 MYOM1P52179 1685 aa12.77□□□□□ -0.36
LINC00838-201ENST00000562956 KDM5AP29375 1690 aaKnown RBP12.77□□□□□ -0.36
LINC00838-201ENST00000562956 KNSTRNQ9Y448 316 aa12.77□□□□□ -0.37
LINC00838-201ENST00000562956 STK26Q9P289 416 aa12.76□□□□□ -0.37
LINC00838-201ENST00000562956 AMER1Q5JTC6 1135 aaPredicted RBP12.76□□□□□ -0.37
LINC00838-201ENST00000562956 NLRP13Q86W25 1043 aa12.76□□□□□ -0.37
LINC00838-201ENST00000562956 BCL11AQ9H165 835 aa12.76□□□□□ -0.37
LINC00838-201ENST00000562956 RIMS2Q9UQ26 1411 aa12.76□□□□□ -0.37
LINC00838-201ENST00000562956 QRICH2Q9H0J4 1663 aa12.75□□□□□ -0.37
LINC00838-201ENST00000562956 TNRQ92752 1358 aa12.75□□□□□ -0.37
LINC00838-201ENST00000562956 ALKQ9UM73 1620 aa12.74□□□□□ -0.37
LINC00838-201ENST00000562956 SAFB2Q14151 953 aaKnown RBP eCLIP12.74□□□□□ -0.37
LINC00838-201ENST00000562956 ARHGEF28Q8N1W1 1705 aaKnown RBP12.74□□□□□ -0.37
LINC00838-201ENST00000562956 CEBPAP49715 358 aaPredicted RBP12.73□□□□□ -0.37
LINC00838-201ENST00000562956 CARD14Q9BXL6 1004 aa12.73□□□□□ -0.37
LINC00838-201ENST00000562956 YTHDC2Q9H6S0 1430 aaKnown RBP12.73□□□□□ -0.37
LINC00838-201ENST00000562956 ZBED9Q6R2W3 1325 aa12.73□□□□□ -0.37
LINC00838-201ENST00000562956 LRPPRCP42704 1394 aaKnown RBP12.72□□□□□ -0.37
LINC00838-201ENST00000562956 PTPRMP28827 1452 aa12.71□□□□□ -0.37
LINC00838-201ENST00000562956 EVC2Q86UK5 1308 aa12.71□□□□□ -0.37
LINC00838-201ENST00000562956 TULP4Q9NRJ4 1543 aa12.71□□□□□ -0.38
LINC00838-201ENST00000562956 PRAM1Q96QH2 718 aa12.71□□□□□ -0.38
LINC00838-201ENST00000562956 SLC12A5Q9H2X9 1139 aa12.71□□□□□ -0.38
LINC00838-201ENST00000562956 DNAJC5Q9H3Z4 198 aa12.7□□□□□ -0.38
LINC00838-201ENST00000562956 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.7□□□□□ -0.38
LINC00838-201ENST00000562956 NPC1L1Q9UHC9 1359 aa12.7□□□□□ -0.38
LINC00838-201ENST00000562956 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
LINC00838-201ENST00000562956 SUPT16HQ9Y5B9 1047 aaKnown RBP12.69□□□□□ -0.38
LINC00838-201ENST00000562956 PPP2R1AP30153 589 aa12.68□□□□□ -0.38
LINC00838-201ENST00000562956 CABP2Q9NPB3 220 aa12.68□□□□□ -0.38
LINC00838-201ENST00000562956 PLPPR3Q6T4P5 718 aa12.68□□□□□ -0.38
LINC00838-201ENST00000562956 PUS7Q96PZ0 661 aaKnown RBP12.68□□□□□ -0.38
LINC00838-201ENST00000562956 POGKQ9P215 609 aa12.68□□□□□ -0.38
LINC00838-201ENST00000562956 TMEM2Q9UHN6 1383 aa12.68□□□□□ -0.38
LINC00838-201ENST00000562956 MINK1Q8N4C8 1332 aaPredicted RBP12.67□□□□□ -0.38
LINC00838-201ENST00000562956 NRXN3Q9Y4C0 1643 aa12.66□□□□□ -0.38
LINC00838-201ENST00000562956 METP08581 1390 aa12.66□□□□□ -0.38
LINC00838-201ENST00000562956 HDGFP51858 240 aaKnown RBP12.66□□□□□ -0.38
LINC00838-201ENST00000562956 NSD3Q9BZ95 1437 aa12.66□□□□□ -0.38
LINC00838-201ENST00000562956 UBR1Q8IWV7 1749 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms