RNA–Protein interactions for RNA: ENST00000561442.5

USP3-221, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-221ENST00000561442 ANKRD30BQ9BXX2 1392 aa21.05■□□□□ 0.96
USP3-221ENST00000561442 ZFYVE9O95405 1425 aa21.04■□□□□ 0.96
USP3-221ENST00000561442 POLR1AO95602 1720 aaPredicted RBP21.03■□□□□ 0.96
USP3-221ENST00000561442 MED14O60244 1454 aa21.02■□□□□ 0.96
USP3-221ENST00000561442 RGL3Q3MIN7 710 aa21.02■□□□□ 0.96
USP3-221ENST00000561442 BCANQ96GW7 911 aa21.02■□□□□ 0.96
USP3-221ENST00000561442 MYO5BQ9ULV0 1848 aa21.01■□□□□ 0.95
USP3-221ENST00000561442 HDGFP51858 240 aaKnown RBP21.01■□□□□ 0.95
USP3-221ENST00000561442 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.01■□□□□ 0.95
USP3-221ENST00000561442 DHX57Q6P158 1386 aaKnown RBP20.97■□□□□ 0.95
USP3-221ENST00000561442 SPATA31E1Q6ZUB1 1445 aa20.97■□□□□ 0.95
USP3-221ENST00000561442 SLC26A8Q96RN1 970 aa20.97■□□□□ 0.95
USP3-221ENST00000561442 ZNF335Q9H4Z2 1342 aaPredicted RBP20.97■□□□□ 0.95
USP3-221ENST00000561442 IQGAP1P46940 1657 aa20.96■□□□□ 0.95
USP3-221ENST00000561442 PLEKHG1Q9ULL1 1385 aa20.96■□□□□ 0.95
USP3-221ENST00000561442 KIF1BO60333 1816 aa20.95■□□□□ 0.94
USP3-221ENST00000561442 NEXMIFQ5QGS0 1516 aa20.94■□□□□ 0.94
USP3-221ENST00000561442 RPGRIP1LQ68CZ1 1315 aa20.93■□□□□ 0.94
USP3-221ENST00000561442 VGFO15240 615 aaPredicted RBP20.9■□□□□ 0.94
USP3-221ENST00000561442 SIN3AQ96ST3 1273 aa20.88■□□□□ 0.93
USP3-221ENST00000561442 ADAMTS13Q76LX8 1427 aa20.87■□□□□ 0.93
USP3-221ENST00000561442 ADGRF5Q8IZF2 1346 aa20.86■□□□□ 0.93
USP3-221ENST00000561442 NEUROD1Q13562 356 aa20.86■□□□□ 0.93
USP3-221ENST00000561442 LTBP4Q8N2S1 1624 aa20.86■□□□□ 0.93
USP3-221ENST00000561442 TBX22Q9Y458 520 aa20.85■□□□□ 0.93
USP3-221ENST00000561442 CERKQ8TCT0 537 aa20.83■□□□□ 0.93
USP3-221ENST00000561442 SETBP1Q9Y6X0 1596 aa20.83■□□□□ 0.92
USP3-221ENST00000561442 KDM2AQ9Y2K7 1162 aa20.82■□□□□ 0.92
USP3-221ENST00000561442 PPLO60437 1756 aa20.82■□□□□ 0.92
USP3-221ENST00000561442 DCAF11Q8TEB1 546 aa20.81■□□□□ 0.92
USP3-221ENST00000561442 NRXN3Q9Y4C0 1643 aa20.81■□□□□ 0.92
USP3-221ENST00000561442 KCNA6P17658 529 aa20.8■□□□□ 0.92
USP3-221ENST00000561442 METP08581 1390 aa20.79■□□□□ 0.92
USP3-221ENST00000561442 DIP2AQ14689 1571 aa20.79■□□□□ 0.92
USP3-221ENST00000561442 CPS1P31327 1500 aa20.78■□□□□ 0.92
USP3-221ENST00000561442 MYOM2P54296 1465 aa20.77■□□□□ 0.92
USP3-221ENST00000561442 IFT172Q9UG01 1749 aa20.76■□□□□ 0.91
USP3-221ENST00000561442 PIK3C2GO75747 1445 aa20.76■□□□□ 0.91
USP3-221ENST00000561442 PTPRUQ92729 1446 aa20.76■□□□□ 0.91
USP3-221ENST00000561442 ALKQ9UM73 1620 aa20.75■□□□□ 0.91
USP3-221ENST00000561442 STRCP1A6NGW2 1772 aa20.75■□□□□ 0.91
USP3-221ENST00000561442 RBM33Q96EV2 1170 aaKnown RBP20.75■□□□□ 0.91
USP3-221ENST00000561442 AMOTL2Q9Y2J4 779 aa20.75■□□□□ 0.91
USP3-221ENST00000561442 PIK3R4Q99570 1358 aa20.74■□□□□ 0.91
USP3-221ENST00000561442 PROSER2Q86WR7 435 aaPredicted RBP20.74■□□□□ 0.91
USP3-221ENST00000561442 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
USP3-221ENST00000561442 NRXN1Q9ULB1 1477 aa20.74■□□□□ 0.91
USP3-221ENST00000561442 LRRC7Q96NW7 1537 aa20.73■□□□□ 0.91
USP3-221ENST00000561442 NWD1Q149M9 1564 aa20.72■□□□□ 0.91
USP3-221ENST00000561442 CFAP70Q5T0N1 1121 aa20.72■□□□□ 0.91
USP3-221ENST00000561442 TMEM132EQ6IEE7 984 aa20.71■□□□□ 0.91
USP3-221ENST00000561442 CCER1Q8TC90 406 aaPredicted RBP20.71■□□□□ 0.91
USP3-221ENST00000561442 TMEM94Q12767 1356 aa20.71■□□□□ 0.91
USP3-221ENST00000561442 NKTRP30414 1462 aaKnown RBP20.7■□□□□ 0.9
USP3-221ENST00000561442 C14orf93Q9H972 538 aaKnown RBP20.7■□□□□ 0.9
USP3-221ENST00000561442 STAC3Q96MF2 364 aa20.69■□□□□ 0.9
USP3-221ENST00000561442 STK26Q9P289 416 aa20.68■□□□□ 0.9
USP3-221ENST00000561442 TONSLQ96HA7 1378 aa20.67■□□□□ 0.9
USP3-221ENST00000561442 SETD1AO15047 1707 aaKnown RBP20.67■□□□□ 0.9
USP3-221ENST00000561442 CHD2O14647 1828 aaKnown RBP20.67■□□□□ 0.9
USP3-221ENST00000561442 IQSEC2Q5JU85 1478 aa20.66■□□□□ 0.9
USP3-221ENST00000561442 ASXL1Q8IXJ9 1541 aa20.66■□□□□ 0.9
USP3-221ENST00000561442 PRAG1Q86YV5 1406 aa20.64■□□□□ 0.89
USP3-221ENST00000561442 UBAP1LF5GYI3 381 aa20.64■□□□□ 0.89
USP3-221ENST00000561442 C14orf37Q86TY3 774 aa20.64■□□□□ 0.89
USP3-221ENST00000561442 XRN1Q8IZH2 1706 aaKnown RBP20.64■□□□□ 0.89
USP3-221ENST00000561442 ROBO2Q9HCK4 1378 aa20.63■□□□□ 0.89
USP3-221ENST00000561442 LRPPRCP42704 1394 aaKnown RBP20.62■□□□□ 0.89
USP3-221ENST00000561442 CLSPNQ9HAW4 1339 aa20.62■□□□□ 0.89
USP3-221ENST00000561442 YTHDC2Q9H6S0 1430 aaKnown RBP20.61■□□□□ 0.89
USP3-221ENST00000561442 FBXO41Q8TF61 875 aa20.61■□□□□ 0.89
USP3-221ENST00000561442 PTCH1Q13635 1447 aa20.6■□□□□ 0.89
USP3-221ENST00000561442 LAMC1P11047 1609 aa20.59■□□□□ 0.89
USP3-221ENST00000561442 ABCC11Q96J66 1382 aa20.59■□□□□ 0.89
USP3-221ENST00000561442 NBPF1Q3BBV0 1214 aa20.58■□□□□ 0.89
USP3-221ENST00000561442 MSH6P52701 1360 aa20.58■□□□□ 0.88
USP3-221ENST00000561442 ADGRB1O14514 1584 aa20.57■□□□□ 0.88
USP3-221ENST00000561442 WAPLQ7Z5K2 1190 aa20.57■□□□□ 0.88
USP3-221ENST00000561442 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
USP3-221ENST00000561442 TECPR2O15040 1411 aa20.56■□□□□ 0.88
USP3-221ENST00000561442 TOM1O60784 492 aa20.56■□□□□ 0.88
USP3-221ENST00000561442 PIP4K2BP78356 416 aa20.56■□□□□ 0.88
USP3-221ENST00000561442 NBPF8Q3BBV2 869 aa20.56■□□□□ 0.88
USP3-221ENST00000561442 ILDR1Q86SU0 546 aaPredicted RBP20.56■□□□□ 0.88
USP3-221ENST00000561442 TRAK1Q9UPV9 953 aa20.56■□□□□ 0.88
USP3-221ENST00000561442 NCOA3Q9Y6Q9 1424 aa20.55■□□□□ 0.88
USP3-221ENST00000561442 PLEKHH1Q9ULM0 1364 aa20.55■□□□□ 0.88
USP3-221ENST00000561442 XIRP1Q702N8 1843 aaKnown RBP20.55■□□□□ 0.88
USP3-221ENST00000561442 SAFB2Q14151 953 aaKnown RBP eCLIP20.53■□□□□ 0.88
USP3-221ENST00000561442 C19orf44Q9H6X5 657 aa20.53■□□□□ 0.88
USP3-221ENST00000561442 PRAM1Q96QH2 718 aa20.52■□□□□ 0.88
USP3-221ENST00000561442 ADGRL3Q9HAR2 1447 aa20.52■□□□□ 0.87
USP3-221ENST00000561442 ATF3P18847 181 aa20.51■□□□□ 0.87
USP3-221ENST00000561442 POGKQ9P215 609 aa20.51■□□□□ 0.87
USP3-221ENST00000561442 ROCK2O75116 1388 aaKnown RBP20.49■□□□□ 0.87
USP3-221ENST00000561442 SIRT1Q96EB6 747 aa20.49■□□□□ 0.87
USP3-221ENST00000561442 FAM135BQ49AJ0 1406 aa20.49■□□□□ 0.87
USP3-221ENST00000561442 KNDC1Q76NI1 1749 aa20.48■□□□□ 0.87
USP3-221ENST00000561442 CADPS2Q86UW7 1296 aa20.48■□□□□ 0.87
USP3-221ENST00000561442 KIAA1210Q9ULL0 1709 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms